BAC Information

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BAC

Clone NameB6Ng01-148M13
Chromosome3 (Build37)
Map Location 97,980,076 - 98,127,332
singlet/doubletdoublet
Overlap geneLOC622561, Reg4, Hmgcs2, Phgdh
Upstream geneAcp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30
Downstream geneZfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148M13.bB6Ng01-148M13.g
ACCDH945297DH945298
length5101,040
definitionDH945297|Mus musculus domesticus DNA, BAC clone: B6Ng01-148M13, 5' end.DH945298|Mus musculus domesticus DNA, BAC clone: B6Ng01-148M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,126,817 - 98,127,332)(97,980,076 - 97,981,108)
sequence
ttagtgtcagggtcctcacccatctagaggacagcagctgaggaaggacg
cctggctccatggctccagccacatctcttggttacagcaggcacacctg
cctcaatggattgactatacccttcctcctcaaggacatcagggccttca
tgacatatggttcctatggccctttctccatagtcaatctcagacaaaag
ttgagcttggtagggaggcctgctggtagatcaggcaagggtacttaggt
cttcgttattgcaaaacccacctgcctgctttctgaatctgcctggctgc
ttatggggaataatgtaactgaggccatggctcctcctgagacttgaatg
attcttccttgagattgtctccaatgctgggtttcatctcattcaactcc
tttctctcacaaggtgtgtgtgtgtgtctgtgtctgtgtctgtgtgtctg
tgtgtctgtgtctagggggcatgaggggtagggaaggtttgcatgtgggt
gtgtgtgtgt
gaattcatgtcctttaagctagctcctcaaacaatccttgaagtaaccct
acaaattaaactaaagagaaaaacaaacctatctataaggccacaggaaa
gaacaaatgatgttggagtaatagctaaatataagaggaagcaagaaaaa
aaaaaggataaaatcaagaaaataccaggaatcaactctacatctgacag
agggctaatatccaaaatatataaagaatccaagaaactagatatcaaca
aatcaaatgatccaattttaaaaatagaatacaaatctaaacagaattct
caacagatgaatctcatatggcccagaaagactaaagaaatgttcagcat
ccttagtcatctgagaaatgcaaatcaaaaacacaagtgacagcacacgc
tgggcgaggatgtggagcaggggaaacactcctccattgctggtgggagt
gcaaactggtacaaccactttgaaaaccaatatggctgtttctcagaaaa
ttgggaaaccacgtccctccagttcactctcgttaggggccactgctata
ggattagtagtttttgaaggaatatgctgcttttgtttttttcattttta
ttatattatttcattgtaatttatacatctcatgttacttctttgcttgg
cttgtttttattttgaggtgttttaaaaacgcatttttaataattcttga
gaattctgtacgtgctttgatcatagtcacccctcccagagttcctccta
gattctcccttcccttagttcctacccacttaacttcctgtcttttctct
ctcttttttatcctcgttcatgacatccagcatgtgctgggatggctaaa
gggtttttttttatcatttataatctttctgtgaagtatttataatgttt
atgagacacttggatgtagtagtgttgagttttgtagtcgaagagaattc
tcagacccaggagccttgggtggctgctcttagttctgattatgagtaga
attttatgggggacagcagcaccgctatcgtgaacactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98126817_98127332
seq2: B6Ng01-148M13.b_50_565 (reverse)

seq1  ACACACACACACCCACATGCAAACCTTCCCTACCCCTCATGCCCCCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACCCACATGCAAACCTTCCCTACCCCTCATGCCCCCTAGA  50

seq1  CACAGACACACAGACACACAGACACAGACACAGACACACACACACACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACACAGACACACAGACACAGACACAGACACACACACACACCTT  100

seq1  GTGAGAGAAAGGAGTTGAATGAGATGAAACCCAGCATTGGAGACAATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAAGGAGTTGAATGAGATGAAACCCAGCATTGGAGACAATCTC  150

seq1  AAGGAAGAATCATTCAAGTCTCAGGAGGAGCCATGGCCTCAGTTACATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAATCATTCAAGTCTCAGGAGGAGCCATGGCCTCAGTTACATTA  200

seq1  TTCCCCATAAGCAGCCAGGCAGATTCAGAAAGCAGGCAGGTGGGTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATAAGCAGCCAGGCAGATTCAGAAAGCAGGCAGGTGGGTTTTGC  250

seq1  AATAACGAAGACCTAAGTACCCTTGCCTGATCTACCAGCAGGCCTCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACGAAGACCTAAGTACCCTTGCCTGATCTACCAGCAGGCCTCCCTA  300

seq1  CCAAGCTCAACTTTTGTCTGAGATTGACTATGGAGAAAGGGCCATAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTCAACTTTTGTCTGAGATTGACTATGGAGAAAGGGCCATAGGAA  350

seq1  CCATATGTCATGAAGGCCCTGATGTCCTTGAGGAGGAAGGGTATAGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGTCATGAAGGCCCTGATGTCCTTGAGGAGGAAGGGTATAGTCAA  400

seq1  TCCATTGAGGCAGGTGTGCCTGCTGTAACCAAGAGATGTGGCTGGAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGAGGCAGGTGTGCCTGCTGTAACCAAGAGATGTGGCTGGAGCCA  450

seq1  TGGAGCCAGGCGTCCTTCCTCAGCTGCTGTCCTCTAGATGGGTGAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCAGGCGTCCTTCCTCAGCTGCTGTCCTCTAGATGGGTGAGGACC  500

seq1  CTGACACTAAGAATTC  516
      ||||||||||||||||
seq2  CTGACACTAAGAATTC  516

seq1: chr3_97980076_97981108
seq2: B6Ng01-148M13.g_79_1108

seq1  CCTTTAAGCTAGCTCCTCAAACAATCCTTGAAGTAACCCTACAAATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGCTAGCTCCTCAAACAATCCTTGAAGTAACCCTACAAATTAAA  50

seq1  CTAAAGAGAAAAACAAACCTATCTATAAGGCCACAGGAAAGAACAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGAAAAACAAACCTATCTATAAGGCCACAGGAAAGAACAAATGA  100

seq1  TGTTGGAGTAATAGCTAAATATAAGAGGAAGCAAGAAAAAAAAAAGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGTAATAGCTAAATATAAGAGGAAGCAAGAAAAAAAAAAGGATA  150

seq1  AAATCAAGAAAATACCAGGAATCAACTCTACATCTGACAGAGGGCTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAAAATACCAGGAATCAACTCTACATCTGACAGAGGGCTAATA  200

seq1  TCCAAAATATATAAAGAATCCAAGAAACTAGATATCAACAAATCAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATATATAAAGAATCCAAGAAACTAGATATCAACAAATCAAATGA  250

seq1  TCCAATTTTAAAAATAGAATACAAATCTAAACAGAATTCTCAACAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTTAAAAATAGAATACAAATCTAAACAGAATTCTCAACAGATGA  300

seq1  ATCTCATATGGCCCAGAAAGACTAAAGAAATGTTCAGCATCCTTAGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATATGGCCCAGAAAGACTAAAGAAATGTTCAGCATCCTTAGTCAT  350

seq1  CTGAGAAATGCAAATCAAAAACACAAGTGACAGCACACGCTGGGCGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAATGCAAATCAAAAACACAAGTGACAGCACACGCTGGGCGAGGA  400

seq1  TGTGGAGCAGGGGAAACACTCCTCCATTGCTGGTGGGAGTGCAAACTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCAGGGGAAACACTCCTCCATTGCTGGTGGGAGTGCAAACTGGT  450

seq1  ACAACCACTTTGAAAACCAATATGGCTGTTTCTCAGAAAATTGGGAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACTTTGAAAACCAATATGGCTGTTTCTCAGAAAATTGGGAAACC  500

seq1  ACGTCCCTCCAGTTCACTCTCGTTAGGGGCCACTGCTATAGGATTAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCTCCAGTTCACTCTCGTTAGGGGCCACTGCTATAGGATTAGTAG  550

seq1  TTTTTGAAGGAATATGCTGCTTTTGTTTTTTTCATTTTTATTATATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAGGAATATGCTGCTTTTGTTTTTTTCATTTTTATTATATTATT  600

seq1  TCATTGTAATTTATACATCTCATGTTACTTCTTTGCTTGGCTTGTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTAATTTATACATCTCATGTTACTTCTTTGCTTGGCTTGTTTTTA  650

seq1  TTTTGAGGTGTTTTAAAAACGCATTTTTAATAATTCTTGAGAATTCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGTGTTTTAAAAACGCATTTTTAATAATTCTTGAGAATTCTGTA  700

seq1  CGTGCTTTGATCATAGTCACCCCTCCCAGAGTTCCTCCTAGATTCTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTTTGATCATAGTCACCCCTCCCAGAGTTCCTCCTAGATTCTCCCT  750

seq1  TCCCTTAGTTCCTACCCACTTAACTTCCTGTCTTTTCTCTCTCTTTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAGTTCCTACCCACTTAACTTCCTGTCTTTTCTCTCTCTTTTTTA  800

seq1  TCCTCGTTCATGACATCCAGCATGTGCTGGGATGGCTAAAGGTTTTTTTT  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCTCGTTCATGACATCCAGCATGTGCTGGGATGGCTAAAGGGTTTTTTT  850

seq1  TAATCATTTATAATCTTTCTGTTGAAGTATTTATAATGTTTATGAGACAC  900
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTATCATTTATAATCTTTCTG-TGAAGTATTTATAATGTTTATGAGACAC  899

seq1  TTGGATGTAGTAGTGTTGAG-TGTGTAGTTCAGAAGAGAATTACTCAGAC  949
      |||||||||||||||||||| | ||||||   |||||||||| |||||||
seq2  TTGGATGTAGTAGTGTTGAGTTTTGTAGT--CGAAGAGAATT-CTCAGAC  946

seq1  CCA-GAGCCCTGGGTGCCTGCTCTAAGTTCTGTATTAATGAGTAGAATTT  998
      ||| ||||| |||||| ||||||| ||||||| ||| |||||||||||||
seq2  CCAGGAGCCTTGGGTGGCTGCTCTTAGTTCTG-ATT-ATGAGTAGAATTT  994

seq1  TAATGGGGACAGCAGCCACAGCTATC-TG-ACACTAC  1033
      ||  ||||||||||| ||| |||||| || |||||||
seq2  TATGGGGGACAGCAG-CACCGCTATCGTGAACACTAC  1030