BAC Information

Click to search

BAC

Clone NameB6Ng01-149F07
Chromosome3 (Build37)
Map Location 89,908,480 - 90,075,526
singlet/doubletdoublet
Overlap geneNup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
Upstream geneLOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3
Downstream geneGatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149F07.bB6Ng01-149F07.g
ACCDH945697DH945698
length675902
definitionDH945697|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F07, 5' end.DH945698|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,908,480 - 89,909,152)(90,074,625 - 90,075,526)
sequence
gaattctgcctccctgttgagacacatctgttggcataggcaagtcccgt
gtcagacagacactgctggcattcatttgccccaatttgaaggatttata
atggaaacggaatcaggtgaagtgagagccacgttaggagaccctgacaa
caaccaccaagctagaataataagacacaattcatcatgcatggagacgc
gatctgcctgtccagcagatcaactgtccaggggattcagttgaagtggg
aagatgggtagtctaaaatgggcgtggtggcacacgcctttaatcccagc
actcgggaggcagaggcgggcggatttctgagttcgaggccagcctggtc
tacagagtgaattccaggacagccagggcaacacaagagaaatcctgtct
cgaaaaaccaaaaaaaaaaaaaaaaaaaaagatgggtagcccactctggg
aaaacgactatcaacttcctgagtataagagaactcagtggcgggtgacc
tggttacatgaactgtagggaatttaactaaaggaagcccttggatacca
gaacatttttctaagtgaaaagagatttcccccttcctgtaactttgcag
atcggagagttggatgcgcctgcttagccagccctctacttaggaactac
atccctagtcctttccctaccctct
gaattccagggaggcctcttcctctggtccagtgtaagctggggaacaac
atgtctgagagtcaaaggtagcaatggaggggcttgtctcactctgtttt
tcacacaaatgtctcatcttcaccaccagcttctgacagatcttgcacca
ggggtggccaaaaatttatggttgggtaccagtttcaaggctctccagtg
ggatgctcaacctccttggtaagctcagaaatgctgcttcccctacccct
gctcctagcttcattttattcccaactcagccacttcagagaaggtctgt
tgccccctggaccctcccttcaaactgcagatttgaggccaacaacctcc
caagcccaccagcttctcactctggtccagctgctggtacagacttgtca
gggtggccaataaaagcttgtatggtcttcggggcagggtcctagcggag
aggggcttcttttcctcctttctgagagataacatacagagaaaggatgt
tggggctcctaccaaaagctctatgagccaataaaaccccacacatcagc
ccttggatgtccattctcctctagccctcagatggtacttagcctcttac
tggaagagcgtgttggtatcaagatcaacacagatgacgtcagcaggtgg
gtcatgcagatcgaaataactggagtggatacccacaatgaagggcacgg
gggcactcagcacatccgccagcactagcgggcacaatgggatgtaggga
cactgccaatgcagagggaagatcatctgaaacatgaagagtgagaactg
ggtgagtatggggcactggccttgggggaggaggggcctactgaaagaag
cctttgagctaatcttgaagaaagatcccgtgtctgacacctgtaccagg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89908480_89909152
seq2: B6Ng01-149F07.b_49_723

seq1  GAATTCTGCCTCCCTGTTGAGACACATCTGTTGGCATAGGCAAGTCCCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTCCCTGTTGAGACACATCTGTTGGCATAGGCAAGTCCCGT  50

seq1  GTCAGACAGACACTGCTGGCATTCATTTGCCCCAATTTGAAGGATTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACAGACACTGCTGGCATTCATTTGCCCCAATTTGAAGGATTTATA  100

seq1  ATGGAAACGGAATCAGGTGAAGTGAGAGCCACGTTAGGAGACCCTGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACGGAATCAGGTGAAGTGAGAGCCACGTTAGGAGACCCTGACAA  150

seq1  CAACCACCAAGCTAGAATAATAAGACACAATTCATCATGCATGGAGACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACCAAGCTAGAATAATAAGACACAATTCATCATGCATGGAGACGC  200

seq1  GATCTGCCTGTCCAGCAGATCAACTGTCCAGGGGATTCAGTTGAAGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTGTCCAGCAGATCAACTGTCCAGGGGATTCAGTTGAAGTGGG  250

seq1  AAGATGGGTAGTCTAAAATGGGCGTGGTGGCACACGCCTTTAATCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGTAGTCTAAAATGGGCGTGGTGGCACACGCCTTTAATCCCAGC  300

seq1  ACTCGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGAGGCAGAGGCGGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTC  350

seq1  TACAGAGTGAATTCCAGGACAGCCAGGGCAACACAAGAGAAATCCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGAATTCCAGGACAGCCAGGGCAACACAAGAGAAATCCTGTCT  400

seq1  CGAAAAACCAAAAAAAAAAAAAAAAAAAAAGATGGGTAGCCCACTCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAACCAAAAAAAAAAAAAAAAAAAAAGATGGGTAGCCCACTCTGGG  450

seq1  AAAACGACTATCAACTTCCTGAGTATAAGAGAACTCAGTGGCGGGTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGACTATCAACTTCCTGAGTATAAGAGAACTCAGTGGCGGGTGACC  500

seq1  TGGTTACATGAACTGTAGGGAATTTAACCAAAGGAAGCCCTTGGATACCA  550
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGTTACATGAACTGTAGGGAATTTAACTAAAGGAAGCCCTTGGATACCA  550

seq1  GAACATTTATTCTAAGTG-AAAGAGATTT-CCCCTTCCTGTAACTTTGCA  598
      |||||||| ||||||||| |||||||||| ||||||||||||||||||||
seq2  GAACATTT-TTCTAAGTGAAAAGAGATTTCCCCCTTCCTGTAACTTTGCA  599

seq1  GATCGGAGAGTTGGATGCGCCTGC-TAGCCAGCCCTCTACTTAGGAACTA  647
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATCGGAGAGTTGGATGCGCCTGCTTAGCCAGCCCTCTACTTAGGAACTA  649

seq1  CATCCCTAGCCCTTTCCCTACCCTCT  673
      ||||||||| ||||||||||||||||
seq2  CATCCCTAGTCCTTTCCCTACCCTCT  675

seq1: chr3_90074625_90075526
seq2: B6Ng01-149F07.g_67_968 (reverse)

seq1  CACCTGGGTACAGTTGTCAGACACGGGATCTTTCTTCAAGATTAGCTCAA  50
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACCT-GGTACAGGTGTCAGACACGGGATCTTTCTTCAAGATTAGCTCAA  49

seq1  AGGCTTCTTTCAGTAGGCCCCTCCT-CCCCAAGGCCAGTGCCCCATACTC  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGCTTCTTTCAGTAGGCCCCTCCTCCCCCAAGGCCAGTGCCCCATACTC  99

seq1  A-CCAGTTCTCACTCCTTCATGTTTCAGATGATCTTCCCTCTGCATTGGC  148
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTCTCACT-CTTCATGTTTCAGATGATCTTCCCTCTGCATTGGC  148

seq1  AGTGTCCCTACATCCCATTGTGCCCGCTAGTGCTGGCGGATGTGCTGAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCCTACATCCCATTGTGCCCGCTAGTGCTGGCGGATGTGCTGAGT  198

seq1  GCCCCCGTGCCCTTCATTGTGGGTATCCACTCCAGTTATTTCGATCTGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCGTGCCCTTCATTGTGGGTATCCACTCCAGTTATTTCGATCTGCA  248

seq1  TGACCCACCTGCTGACGTCATCTGTGTTGATCTTGATACCAACACGCTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCACCTGCTGACGTCATCTGTGTTGATCTTGATACCAACACGCTCT  298

seq1  TCCAGTAAGAGGCTAAGTACCATCTGAGGGCTAGAGGAGAATGGACATCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAAGAGGCTAAGTACCATCTGAGGGCTAGAGGAGAATGGACATCC  348

seq1  AAGGGCTGATGTGTGGGGTTTTATTGGCTCATAGAGCTTTTGGTAGGAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGATGTGTGGGGTTTTATTGGCTCATAGAGCTTTTGGTAGGAGC  398

seq1  CCCAACATCCTTTCTCTGTATGTTATCTCTCAGAAAGGAGGAAAAGAAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACATCCTTTCTCTGTATGTTATCTCTCAGAAAGGAGGAAAAGAAGC  448

seq1  CCCTCTCCGCTAGGACCCTGCCCCGAAGACCATACAAGCTTTTATTGGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCGCTAGGACCCTGCCCCGAAGACCATACAAGCTTTTATTGGCC  498

seq1  ACCCTGACAAGTCTGTACCAGCAGCTGGACCAGAGTGAGAAGCTGGTGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACAAGTCTGTACCAGCAGCTGGACCAGAGTGAGAAGCTGGTGGG  548

seq1  CTTGGGAGGTTGTTGGCCTCAAATCTGCAGTTTGAAGGGAGGGTCCAGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGTTGTTGGCCTCAAATCTGCAGTTTGAAGGGAGGGTCCAGGG  598

seq1  GGCAACAGACCTTCTCTGAAGTGGCTGAGTTGGGAATAAAATGAAGCTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGACCTTCTCTGAAGTGGCTGAGTTGGGAATAAAATGAAGCTAG  648

seq1  GAGCAGGGGTAGGGGAAGCAGCATTTCTGAGCTTACCAAGGAGGTTGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGGTAGGGGAAGCAGCATTTCTGAGCTTACCAAGGAGGTTGAGC  698

seq1  ATCCCACTGGAGAGCCTTGAAACTGGTACCCAACCATAAATTTTTGGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACTGGAGAGCCTTGAAACTGGTACCCAACCATAAATTTTTGGCCA  748

seq1  CCCCTGGTGCAAGATCTGTCAGAAGCTGGTGGTGAAGATGAGACATTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGTGCAAGATCTGTCAGAAGCTGGTGGTGAAGATGAGACATTTGT  798

seq1  GTGAAAAACAGAGTGAGACAAGCCCCTCCATTGCTACCTTTGACTCTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAACAGAGTGAGACAAGCCCCTCCATTGCTACCTTTGACTCTCAG  848

seq1  ACATGTTGTTCCCCAGCTTACACTGGACCAGAGGAAGAGGCCTCCCTGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGTTCCCCAGCTTACACTGGACCAGAGGAAGAGGCCTCCCTGGA  898

seq1  ATTC  902
      ||||
seq2  ATTC  902