BAC Information

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BAC

Clone NameB6Ng01-149J17
Chromosome3 (Build37)17 (Build37)
Map Location 93,585,362 - 93,586,07547,856,030 - 47,856,119
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563
Downstream geneTdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149J17.bB6Ng01-149J17.g
ACCDH945901DH945902
length714270
definitionDH945901|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J17, 5' end.DH945902|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,585,362 - 93,586,075)(47,856,030 - 47,856,119)
sequence
gaattctctatttacacattaggtcttttattatgaaatttctgggatat
atatatatatatatatatgttgaatatcagccctcagtcagatgaaaggc
catgaaagggtgctgctaactggcttgtttctcatagcatgctcagccta
ccatccaaggattaccagcacacatatgacaccacccacaatgggctgga
ttctcccctatcagtcacttattaagcaaatgccttgcagttaaatattc
tggaggcattttactcaattaaggttccctcctctcagatacctctagtt
tgtgatgttaatatgagaccggccagcatgtttagtaaagctgggtatcc
cttgacttattaataatttgcacattctccttaacaatgatgtgcctgct
caactgctgttttaataattgctcaacctgtgtttttggcttgtttgttt
gttttttatttaatgtttgtgtgtttggtttcattttagatattaattca
tttaagaaggatgccatcaattcaaataaactcgtttcccagagcagcct
tactctgtatcctcggctaccacttcagcttaggttcttctgcctctgat
cttgaatataattttcagaaggacacctttgactttaccttcatagttca
tcttttggggagtcatatttaagggtgtggatgttgaagtgagatttgtg
agtttgttttggat
tgaagaaataggctccaataccagtaaagaaatgggcttgctagtaagat
gagagcaaacaggtaaagacacagagcttccttattccatatataggcct
tcagcagaaggtgtggcccagttgaaggtgtgtcttctagtctcaaaatc
tggattaaaggtgtgtgttttagccaggggtggtggtgcacgcctttaat
cccatcacttgggaggcagaggcaggcagatttctaaattcaaggccagc
ctggtctacatagtgagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93585362_93586075
seq2: B6Ng01-149J17.b_46_759 (reverse)

seq1  ATCCAAAACAAACTCACAAATCTCACTTCAACATCCACACCCTTAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAACAAACTCACAAATCTCACTTCAACATCCACACCCTTAAATAT  50

seq1  GACTCCCCAAAAGATGAACTATGAAGGTAAAGTCAAAGGTGTCCTTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCAAAAGATGAACTATGAAGGTAAAGTCAAAGGTGTCCTTCTGA  100

seq1  AAATTATATTCAAGATCAGAGGCAGAAGAACCTAAGCTGAAGTGGTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATTCAAGATCAGAGGCAGAAGAACCTAAGCTGAAGTGGTAGCC  150

seq1  GAGGATACAGAGTAAGGCTGCTCTGGGAAACGAGTTTATTTGAATTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATACAGAGTAAGGCTGCTCTGGGAAACGAGTTTATTTGAATTGATG  200

seq1  GCATCCTTCTTAAATGAATTAATATCTAAAATGAAACCAAACACACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTCTTAAATGAATTAATATCTAAAATGAAACCAAACACACAAAC  250

seq1  ATTAAATAAAAAACAAACAAACAAGCCAAAAACACAGGTTGAGCAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAAAAACAAACAAACAAGCCAAAAACACAGGTTGAGCAATTAT  300

seq1  TAAAACAGCAGTTGAGCAGGCACATCATTGTTAAGGAGAATGTGCAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGCAGTTGAGCAGGCACATCATTGTTAAGGAGAATGTGCAAATT  350

seq1  ATTAATAAGTCAAGGGATACCCAGCTTTACTAAACATGCTGGCCGGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAGTCAAGGGATACCCAGCTTTACTAAACATGCTGGCCGGTCTC  400

seq1  ATATTAACATCACAAACTAGAGGTATCTGAGAGGAGGGAACCTTAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACATCACAAACTAGAGGTATCTGAGAGGAGGGAACCTTAATTGA  450

seq1  GTAAAATGCCTCCAGAATATTTAACTGCAAGGCATTTGCTTAATAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGCCTCCAGAATATTTAACTGCAAGGCATTTGCTTAATAAGTGA  500

seq1  CTGATAGGGGAGAATCCAGCCCATTGTGGGTGGTGTCATATGTGTGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGGGAGAATCCAGCCCATTGTGGGTGGTGTCATATGTGTGCTGG  550

seq1  TAATCCTTGGATGGTAGGCTGAGCATGCTATGAGAAACAAGCCAGTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTGGATGGTAGGCTGAGCATGCTATGAGAAACAAGCCAGTTAGC  600

seq1  AGCACCCTTTCATGGCCTTTCATCTGACTGAGGGCTGATATTCAACATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTTTCATGGCCTTTCATCTGACTGAGGGCTGATATTCAACATAT  650

seq1  ATATATATATATATATATCCCAGAAATTTCATAATAAAAGACCTAATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATCCCAGAAATTTCATAATAAAAGACCTAATGTG  700

seq1  TAAATAGAGAATTC  714
      ||||||||||||||
seq2  TAAATAGAGAATTC  714

seq1: chr17_47856030_47856119
seq2: B6Ng01-149J17.g_255_344 (reverse)

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCC  50
      ||||||||| |||||||||||||||||| ||| | |||||||||||||||
seq2  GAACTCACTATGTAGACCAGGCTGGCCTTGAATTTAGAAATCTGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGACTAAAGGCGTGCGCCACCA  90
      ||||||||||||||| ||||| ||||||||||| ||||||
seq2  TCTGCCTCCCAAGTGATGGGATTAAAGGCGTGCACCACCA  90