BAC Information

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BAC

Clone NameB6Ng01-149J18
Chromosome3 (Build37)
Map Location 98,848,168 - 98,982,211
singlet/doubletdoublet
Overlap geneLOC668557, Wars2
Upstream geneNotch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3
Downstream geneTbx15, M6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149J18.bB6Ng01-149J18.g
ACCDH945903DH945904
length1,1311,102
definitionDH945903|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J18, 5' end.DH945904|Mus musculus domesticus DNA, BAC clone: B6Ng01-149J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,981,082 - 98,982,211)(98,848,168 - 98,849,268)
sequence
gaattctaacaggcttaccacagaagaggaaatggagacagttacacgat
cctggcttagacatgtctctaaggtgattccgatgcaatgctatagtctg
aaaggtgcttctgagcacggcgatatccagtattcagctgaacaactagg
aagtcagccccagggcacaaactagtggggtttatctagatcacagtcag
actctgagcctgcctttgagggagtgccttcactatctgaatggatgtgg
gaagacccacttcctaggcagagactcatgaagcccacaaagctgagtac
accatgcaaatattcactgctgttctgtttatggatgccttaactgctgc
cgcggactccccaccgcttctaacctggaactgtgagtcaaaaccaatcc
agtctcttaagtggctttggtcagagtatttcatcacaacaaaatgctgt
ctaagacaggcgctttaagacagtgtgctctttacctgcatttacagaag
tctagagggaaacatggtgtagggaattcaatcttacctcggagcttcaa
aaggctctgaatccgagtcagccaggcactctgatttaatcatctgagat
ttgccatgagcattttaagttttaatagctcgccaggtgattctaatgtg
aggccaatatggaacagacaataattcgacaattaattactacataatta
ttctctgcagctgccaaaactgttcagaaataaacacacacacacacaca
cacacacacacacacacacacacacacacacacactattaaagcgtgaag
agcaaatccatttgtttagttgcgtcgcaatacaataaaacttgtgaaac
aattcattactaacggatggtcaagaagcagccatggagcagcgtggtga
gtagagtaggcaggtgctatttctagtcttactagaagaaagacaagaca
ccctgacagcaagcgcatcatcttcagtaagctggagagtcttactcggc
aaagctcagatctataaccttatatggcttgaaggatcaagaagctcgaa
tgctttgacttcaccaaggacatctttaaggcaagcctggaaaaagcaga
aagataaatttctcatgactagcattctccg
gaattcagcttctgggattcttggagaagaaggttaagttggctgaagtt
aaggtcaattctatttgcttccgggaaacgcttatgacagaatagaagta
acagaatcaggaacctgtgccaagcctaactacacacgttactgtctaac
attgattgttgtcctcccaactcattatgttggaccttaatacctagcaa
tcaagtctgaactagttagctcttgtggctggggacactggacaattaag
tatcagaaatgatctcaaccctacccacttgacacctttgagctctaaaa
taggctctacagggtttccactctcaacagctccaggctgaggcatagtt
ggtgccatatcatctaagagtagactgtctatggatctcatgaacctgag
cttgaaaattaatccaaggataaaggaacaagccactcatctccatacta
ccccagggctcctatcaatgcagcaccaactttgtagtcctttgactgag
tcccaggaactgctgctgctcatcaaaacaggtgcccccggcgtgactct
ccagcctgcaattcctccaacactgtcacgtccaactaaggaggttttta
ttccatgtgcccgtttgccaagactcatataaatcagagtgtgcactttg
cggggtttagatttgattaattttttttaaatttagaagctgcatgaata
aagtttgagattaagtgtgcagagatgtccaggagcagcctccccactgg
cccacagattgagatggatgaggagcaatagtggctttgagctgcccata
attgaaaaagtgtgtgcccaaaatatcatatttatcctacatttctgcaa
gagccataactctacggcctccttcatagagcctcataaaatggaatgtc
tttcaactttcagttcccaaatattctccatgttggttattacttatata
acatgttaagaattgtgaagcaaaaagggactgatgaaagagaaaagaac
cctgtcgtaaaaggggaatagtcctttagcttcttcctttgaagaatcag
catccctaaccaatgcagggcttagcatgacactaaggtctcaccaatta
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98981082_98982211
seq2: B6Ng01-149J18.b_44_1174 (reverse)

seq1  CGGAGAATGCTAGTCATGGAGAATTTAATC-TTCTGCTTTTCCCAGGCTT  49
      ||||||||||||||||| ||||| || ||| |||||||||| ||||||||
seq2  CGGAGAATGCTAGTCAT-GAGAAATTTATCTTTCTGCTTTTTCCAGGCTT  49

seq1  GCTTTAAAGATGT-CTTTGTGAAGTCCAATGCATTCGAGCTTTCTGAATC  98
      || |||||||||| ||| ||||||| ||| ||||||||||||  |||  |
seq2  GCCTTAAAGATGTCCTTGGTGAAGT-CAAAGCATTCGAGCTTCTTGATCC  98

seq1  CTCAAGCCATATAAGGTTTATAGATCTGGGCTTTGCCGAGTAAGACTCTC  148
       ||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TTCAAGCCATATAAGG-TTATAGATCTGAGCTTTGCCGAGTAAGACTCTC  147

seq1  CAGC-TACTGAAGATGATGCGCTTGCTTGTCAGGGTGTCTTGTCTTTC-T  196
      |||| ||||||||||||||||||||| ||||||||||||||||||||| |
seq2  CAGCTTACTGAAGATGATGCGCTTGC-TGTCAGGGTGTCTTGTCTTTCTT  196

seq1  CTAGTAAGACTAGAAATAGCACCTGCCTACTCTACTCACCACGCCTGCTC  246
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTAGTAAGACTAGAAATAGCACCTGCCTACTCTACTCACCACG-CTGCTC  245

seq1  CATGGCTGCTTC-TGACCATCCGTTAGTAATGAATTGTTTCACAAGTTTT  295
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGCTTCTTGACCATCCGTTAGTAATGAATTGTTTCACAAGTTTT  295

seq1  ATTGTATTGCGACGCAACTAAACAAATGGATTTGCTCTTCACGCTTTAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTGCGACGCAACTAAACAAATGGATTTGCTCTTCACGCTTTAAT  345

seq1  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  395

seq1  TGTTTATTTCTGAACAG-TTTGGCAGCTGCAGAGAATAATTATGTAGTAA  444
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTTATTTCTGAACAGTTTTGGCAGCTGCAGAGAATAATTATGTAGTAA  445

seq1  TTAATTGTCGAATTATTGTCTGTTCCATATTGGCCTCACATTAGAATCAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTCGAATTATTGTCTGTTCCATATTGGCCTCACATTAGAATCAC  495

seq1  CTGGCGAGCTATTAAAACTTAAAATGCTCATGGCAAATCTCAGATGATTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGAGCTATTAAAACTTAAAATGCTCATGGCAAATCTCAGATGATTA  545

seq1  AATCAGAGTGCCTGGCTGACTCGGATTCAGAGCCTTTTGAAGCTCCGAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGTGCCTGGCTGACTCGGATTCAGAGCCTTTTGAAGCTCCGAGG  595

seq1  TAAGATTGAATTCCCTACACCATGTTTCCCTCTAGACTTCTGTAAATGCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTGAATTCCCTACACCATGTTTCCCTCTAGACTTCTGTAAATGCA  645

seq1  GGTAAAGAGCACACTGTCTTAAAGCGCCTGTCTTAGACAGCATTTTGTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGAGCACACTGTCTTAAAGCGCCTGTCTTAGACAGCATTTTGTTG  695

seq1  TGATGAAATACTCTGACCAAAGCCACTTAAGAGACTGGATTGGTTTTGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAATACTCTGACCAAAGCCACTTAAGAGACTGGATTGGTTTTGAC  745

seq1  TCACAGTTCCAGGTTAGAAGCGGTGGGGAGTCCGCGGCAGCAGTTAAGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTCCAGGTTAGAAGCGGTGGGGAGTCCGCGGCAGCAGTTAAGGC  795

seq1  ATCCATAAACAGAACAGCAGTGAATATTTGCATGGTGTACTCAGCTTTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAACAGAACAGCAGTGAATATTTGCATGGTGTACTCAGCTTTGT  845

seq1  GGGCTTCATGAGTCTCTGCCTAGGAAGTGGGTCTTCCCACATCCATTCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCATGAGTCTCTGCCTAGGAAGTGGGTCTTCCCACATCCATTCAG  895

seq1  ATAGTGAAGGCACTCCCTCAAAGGCAGGCTCAGAGTCTGACTGTGATCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAAGGCACTCCCTCAAAGGCAGGCTCAGAGTCTGACTGTGATCTA  945

seq1  GATAAACCCCACTAGTTTGTGCCCTGGGGCTGACTTCCTAGTTGTTCAGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCCCACTAGTTTGTGCCCTGGGGCTGACTTCCTAGTTGTTCAGC  995

seq1  TGAATACTGGATATCGCCGTGCTCAGAAGCACCTTTCAGACTATAGCATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTGGATATCGCCGTGCTCAGAAGCACCTTTCAGACTATAGCATT  1045

seq1  GCATCGGAATCACCTTAGAGACATGTCTAAGCCAGGATCGTGTAACTGTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGGAATCACCTTAGAGACATGTCTAAGCCAGGATCGTGTAACTGTC  1095

seq1  TCCATTTCCTCTTCTGTGGTAAGCCTGTTAGAATTC  1130
      ||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCCTCTTCTGTGGTAAGCCTGTTAGAATTC  1131

seq1: chr3_98848168_98849268
seq2: B6Ng01-149J18.g_70_1171

seq1  GAATTCAGCTTCTGGGATTCTTGGAGAAGAAGGTTAAGTTGGCTGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCTGGGATTCTTGGAGAAGAAGGTTAAGTTGGCTGAAGTT  50

seq1  AAGGTCAATTCTATTTGCTTCCGGGAAACGCTTATGACAGAATAGAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAATTCTATTTGCTTCCGGGAAACGCTTATGACAGAATAGAAGTA  100

seq1  ACAGAATCAGGAACCTGTGCCAAGCCTAACTACACACGTTACTGTCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCAGGAACCTGTGCCAAGCCTAACTACACACGTTACTGTCTAAC  150

seq1  ATTGATTGTTGTCCTCCCAACTCATTATGTTGGACCTTAATACCTAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGTTGTCCTCCCAACTCATTATGTTGGACCTTAATACCTAGCAA  200

seq1  TCAAGTCTGAACTAGTTAGCTCTTGTGGCTGGGGACACTGGACAATTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTGAACTAGTTAGCTCTTGTGGCTGGGGACACTGGACAATTAAG  250

seq1  TATCAGAAATGATCTCAACCCTACCCACTTGACACCTTTGAGCTCTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAATGATCTCAACCCTACCCACTTGACACCTTTGAGCTCTAAAA  300

seq1  TAGGCTCTACAGGGTTTCCACTCTCAACAGCTCCAGGCTGAGGCATAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCTACAGGGTTTCCACTCTCAACAGCTCCAGGCTGAGGCATAGTT  350

seq1  GGTGCCATATCATCTAAGAGTAGACTGTCTATGGATCTCATGAACCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCATATCATCTAAGAGTAGACTGTCTATGGATCTCATGAACCTGAG  400

seq1  CTTGAAAATTAATCCAAGGATAAAGGAACAAGCCACTCATCTCCATACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAATTAATCCAAGGATAAAGGAACAAGCCACTCATCTCCATACTA  450

seq1  CCCCAGGGCTCCTATCAATGCAGCACCAACTTTGTAGTCCTTTGACTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGCTCCTATCAATGCAGCACCAACTTTGTAGTCCTTTGACTGAG  500

seq1  TCCCAGGAACTGCTGCTGCTCATCAAAACAGGTGCCCCCGGCGTGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAACTGCTGCTGCTCATCAAAACAGGTGCCCCCGGCGTGACTCT  550

seq1  CCAGCCTGCAATTCCTCCAACACTGTCACGTCCAACTAAGGAGGTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGCAATTCCTCCAACACTGTCACGTCCAACTAAGGAGGTTTTTA  600

seq1  TTCCATGTGCCCGTTTGCCAAGACTCATATAAATCAGAGTGTGCACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTGCCCGTTTGCCAAGACTCATATAAATCAGAGTGTGCACTTTG  650

seq1  CGGGGTTTAGATTTGATTAATTTTTTTTAAATTTAGAAGCTGCATGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTTTAGATTTGATTAATTTTTTTTAAATTTAGAAGCTGCATGAATA  700

seq1  AAGTTTGAGATTAAGTGTGCAGAGATGTCCAGGAGCAGCCTCCCCACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAGATTAAGTGTGCAGAGATGTCCAGGAGCAGCCTCCCCACTGG  750

seq1  CCCACAGATTGAGATGGATGAGGAGCAATAGTGGCTTTGAGCTGCCCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGATTGAGATGGATGAGGAGCAATAGTGGCTTTGAGCTGCCCATA  800

seq1  ATTGAAAAAGTGTGTGCCCAAAATATCATATTTATCCTACATTTCTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAAGTGTGTGCCCAAAATATCATATTTATCCTACATTTCTGCAA  850

seq1  GAGCCATAACTCTACGGCCTCC-TCATAGAGCCTCATTAAATGGAATGTC  899
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  GAGCCATAACTCTACGGCCTCCTTCATAGAGCCTCATAAAATGGAATGTC  900

seq1  -TTCAACTTTCAGTTCCCAAATATTCTCCATGTTGGTTATTACTTATATA  948
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTTTCAGTTCCCAAATATTCTCCATGTTGGTTATTACTTATATA  950

seq1  ACAAGGTTAAGAA-TGTGAAGCAAAAAGGGACTGAGGAAAGAGAAGAGAA  997
      || | |||||||| ||||||||||||||||||||| ||||||||| || |
seq2  AC-ATGTTAAGAATTGTGAAGCAAAAAGGGACTGATGAAAGAGAAAAG-A  998

seq1  ACCCTGTCCGTAAAAGGGGAATAGTCCTTAGGCTTCT--CCTTGAAGGAT  1045
      ||||||| |||||||||||||||||||||  ||||||  | |||||| ||
seq2  ACCCTGT-CGTAAAAGGGGAATAGTCCTTTAGCTTCTTCCTTTGAAGAAT  1047

seq1  CAGCATCCCTAAACAATGGAAGGGCTAGCATGACCACATAGGTCTCACCC  1095
      |||||||||||| ||||| | ||  |||||||| |||  |||||||||| 
seq2  CAGCATCCCTAACCAATGCAGGGCTTAGCATGA-CACTAAGGTCTCACCA  1096

seq1  ATTAGC  1101
      ||||||
seq2  ATTAGC  1102