BAC Information

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BAC

Clone NameB6Ng01-150D01
Chromosome3 (Build37)
Map Location 127,983,060 - 127,984,108
singlet/doubletsinglet
Overlap geneEG668828
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneLOC100043393, EG668831, Pitx2, Enpep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150D01.bB6Ng01-150D01.g
ACCDH946334DH946335
length1,1861,030
definitionDH946334|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D01, 5' end.DH946335|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttctgggaagctccacaagcaggagagcaaagaactcaaaatag
ctttcggaagtccctgaagctgattcactagctccctctctgctagaata
agcaagaaaagctgagagttattcttagacaagctgggttgataggcaaa
gaagagtgagacaagatcagctgcagaaagaagcagaaaccagatgagtt
gcttggaagtttaaaccaactgaggcacctggaaaggtcactctccaacc
tgttgaactacaggctgttcagtatgctccctgttccgagaattatgagc
tgtctttgagtcacttttaatcctgcaagtaactctttccatatactatt
gtatataaccccaatcaaactcattggtttgccatgtttggttcaaatgg
tatccatattgttgtgagtcccctatctgaggtgaatagacatgtatgtt
gcatctccctaaacaacagagtacagagagcctacagaatgggaacaaat
cagagattactatatagaatataaagagaagtaagtacataatcaaacag
aaaaattaagttattcaaataaaacctggaccaatagactgagtagagaa
ttctcaaagagagaaatcctaatggccaataaatatttgaaatggtgttg
ggcattcaaacctgacagagaaatgcacatgagcaccacattgagatttc
gtcttagcctaactgaatggcaatcatcaaggaaataaatgctgatgagc
ctatgctgaaaggaacccggagacatcatggtcaagaatgtaacctgaga
tgatcatgatggaagtcagtgtgagggttcaaaagccaaaagcactgaaa
acaaaactaccatagaagccagtgaaaccacccctgggtatgtccaaagg
agataagtcaacatgtcactgagatatttacaattcttacttattactgt
actattcaaaatagctagatgagctgatctgatgcccttcacaaagataa
agtgcagtacatgcatgcattgagtatcactgtcagctgcaagaaaaata
aaatcatgatgtttcagaaatgcatcactgagacattttgtttctccaaa
taaggcgagtcgaagactgatatttttgtccaatcgactctaagctaatt
gatgtgatgtaattggatgtaaatgatagttaatgt
gaattccattgcgcagggcacaaaagcagaaactaaaaatatgctggtga
tggaaagcagatgatgagagcaggatgaaggcacagaagtggactataat
aaaacacaaagcgagcgggacatgggaactggcagtgcagatgcggaggg
gcgctggctgactgtaatgaggtctgtggggctagtcgttcgtactgtga
aattgcgacatgagtttgacttatgttccacgagttacttacgcattttt
gctgtgtaagtgaaaatcactggcacatgtatgcataggcttataactca
tcttttattattttatatattttttcaaatagccctttattattttgtag
gaaaaactaacggagtaacttgaaataaatataattctgtctgtctgtct
gtcttaacacagcttgcctcaagtttatttgtacaaacagtgtacaatgg
taatctgcaatacagtatatatagtgtcacagagtcagaagtcttttctg
tggagtatttacaggggttctgggcacctttgggagcctgatctagagct
gaagcctgggccttagctggagctgtggcctctgccttgatttgaacctt
gggctttggttggcagagcctaagccccttggccatgcttcaaatccgct
tcccaagcttgaggtgagctatgaaagccagctggctgagtttgcggctg
gggccctttggcatcttgggcttgatggcctgaggcttcacagggacctt
gatggcctctgcgcatgcactcactgcctttgtattgctggcctgcttct
tctccaggcctttcttgttgtgcttcttggcaaagcgcatgttctccagg
aactgaggtcaaccctactaagagatttgtatctttgcgactgggatttc
tgatgccatttatgtgccatttgagacactggttgtgtgtgtgtgttcat
ggctgcagactcccacagcctgggacaggagaaaaatctaatctttagca
gacttcagatcatttgaaaaatatttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127983060_127984108
seq2: B6Ng01-150D01.g_66_1095

seq1  GAATTCCATTGCGCAGGGCACAAAAGCAGAAACTAAAAATATGCTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCGCAGGGCACAAAAGCAGAAACTAAAAATATGCTGGTGA  50

seq1  TGGAAAGCAGATGATGAGAGCAGGATGAAGGCACAGAAGTGGACTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCAGATGATGAGAGCAGGATGAAGGCACAGAAGTGGACTATAAT  100

seq1  AAAACACAAAGCGAGCGGGACATGGGAACTGGCAGTGCAGATGCGGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAAAGCGAGCGGGACATGGGAACTGGCAGTGCAGATGCGGAGGG  150

seq1  GCGCTGGCTGACTGTAATGAGGTCTGTGGGGCTAGTCGTTCGTACTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGCTGACTGTAATGAGGTCTGTGGGGCTAGTCGTTCGTACTGTGA  200

seq1  AATTGCGACATGAGTTTGACTTATGTTCCACGAGTTACTTACGCATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCGACATGAGTTTGACTTATGTTCCACGAGTTACTTACGCATTTTT  250

seq1  GCTGTGTAAGTGAAAATCACTGGCACATGTATGCATAGGCTTATAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAAGTGAAAATCACTGGCACATGTATGCATAGGCTTATAACTCA  300

seq1  TCTTTTATTATTTTATATATTTTTTCAAATAGCCCTTTATTATTTTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTATTTTATATATTTTTTCAAATAGCCCTTTATTATTTTGTAG  350

seq1  GAAAAACTAACGGAGTAACTTGAAATAAATATAATTCTGTCTGTCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTAACGGAGTAACTTGAAATAAATATAATTCTGTCTGTCTGTCT  400

seq1  GTCTTAACACAGCTTGCCTCAAGTTTATTTGTACAAACAGTGTACAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAACACAGCTTGCCTCAAGTTTATTTGTACAAACAGTGTACAATGG  450

seq1  TAATCTGCAATACAGTATATATAGTGTCACAGAGTCAGAAGTCTTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGCAATACAGTATATATAGTGTCACAGAGTCAGAAGTCTTTTCTG  500

seq1  TGGAGTATTTACAGGGGTTCTGGGCACCTTTGGGAGCCTGATCTAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATTTACAGGGGTTCTGGGCACCTTTGGGAGCCTGATCTAGAGCT  550

seq1  GAAGCCTGGGCCTTAGCTGGAGCTGTGGCCTCTGCCTTGATTTGAACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGGGCCTTAGCTGGAGCTGTGGCCTCTGCCTTGATTTGAACCTT  600

seq1  GGGCTTTGGTTGGCAGAGCCTAAGCCCCTTGGCCATGCTTCAAATCCGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGGTTGGCAGAGCCTAAGCCCCTTGGCCATGCTTCAAATCCGCT  650

seq1  TCCCAAGCTTGAGGTGAGCTATGAAAGCCAGCTGGCTGAGTTTGCGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCTTGAGGTGAGCTATGAAAGCCAGCTGGCTGAGTTTGCGGCTG  700

seq1  GGGCCCTTTGGCATCTTGGGCTTGATGGCCTGAGGCTTCACAGGGACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTTTGGCATCTTGGGCTTGATGGCCTGAGGCTTCACAGGGACCTT  750

seq1  GATGGCCTCTGCGCATGCACTCACTGCCTTTGTATTGCTGGCCTGCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTCTGCGCATGCACTCACTGCCTTTGTATTGCTGGCCTGCTTCT  800

seq1  TCTCCAGGCCTTTCTTGTTGTGCTTCTTGGCAAAGCGCATGTTCTCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGCCTTTCTTGTTGTGCTTCTTGGCAAAGCGCATGTTCTCCAGG  850

seq1  AACTGAGGTCAACCCTACTAAGAGATTTGTATCTTTGCGACTGGGATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGTCAACCCTACTAAGAGATTTGTATCTTTGCGACTGGGATTTC  900

seq1  TTGATGCCATTTATGTGCCATTTGAGACACTGGTTGTGTGTGGTGTGGTT  950
       |||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  -TGATGCCATTTATGTGCCATTTGAGACACTGGTTGTGTGT-GTGT-GTT  947

seq1  CATGGCTGCAAGACTCCCACAGGCCTTGGGACCAGAAGGAAAAAAATCTA  1000
      ||||||||| ||||||||||||  | ||||||    |||| |||||||||
seq2  CATGGCTGC-AGACTCCCACAG--CCTGGGAC----AGGAGAAAAATCTA  990

seq1  ATTCCTTTAGCAGAACTTCAGATCCATTTTGGAAAAAAATAATTTGCTT  1049
      ||  ||||||||| ||||||||| |||||  ||||||    ||||||||
seq2  AT--CTTTAGCAG-ACTTCAGAT-CATTT--GAAAAA---TATTTGCTT  1030