BAC Information

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BAC

Clone NameB6Ng01-150I09
Chromosome3 (Build37)16 (Build37)
Map Location 61,007,406 - 61,008,0056,123,184 - 6,123,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneRap2b, LOC666891, LOC669910, LOC676965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150I09.bB6Ng01-150I09.g
ACCDH946581DH946582
length945851
definitionDH946581|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I09, 5' end.DH946582|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,007,406 - 61,008,005)(6,123,184 - 6,123,363)
sequence
gaattcttggtgggagtatgatgcctaactaaaaggatctaaagaagtaa
agatagtagatacaggaaattatcattttatttaataatcaattgctctc
tgggtctcctcatacacttagactgggtgtatgttttcttctatcagtag
tcaacttcattctgtgaaattcgttatttaatgtttagatttaaagacaa
ttggtttttagttctaacttctcttctaggtaattgattccatacttata
acttggtgtggggtgctagttttaattatagatcagcgttcactatttga
ttctcacttctattgtcaatctttttttgtgttttcaaacactgttaata
tgatttacctttcctcccatctctccctctatattgtccttccacctttc
ccagttaagctctctcctattttcctcttattatacctccttcatagcat
tgagtcctgctttcccactccctagaactcctcccccatgtcaatggctt
ctacatttaccctgggttatatatttaaacataaaaattcagatccagga
ttcacaaaaatagagactatgcagcagttgtctctgagtctaggttactt
cactgactgtattttcaagtcccattcatttacttacctgtgaatttcat
gatctttttttttctcccagcttaatataactccaatgagtatatttaac
atatttttattatctatttgtcatttgctctgcttccatttcttagctat
tttgagtaaagtagccatgaacaaggttggttaggtatccctatagcaga
atatcaagtcctttgggtatctgttaatgaatagaagagctgtgtcattt
ggtaggtacgttttcattttcttgagaattctccacactgatttccatag
agactgccctaattttcactcctaccaactgtggaataaatgttc
gaattcttcataaaactaggaaaaaaaatcctaaaacttgtgtggaacca
tgaaagactccaaagacccaaatttctgagtaaaaagcagaatgctggtt
cgtctttgctctaatagtaatatgcagcatgattctggcacagaaccaaa
aatgcagtctgatgaactaaattagaggactggggcaaaaagacacacag
ccgagctggttttcagcaatgtctcaatggtgacaaaaacacactttgag
aatgaagagcatctaacaaacgtactgggaaaactgaatatccaaacaca
tgcgacagaaactagaccccattttcaccctgtaaaataaccaactcaaa
acacatgaaaggcattcaagcctgccctaatactctgaaagtcatgtggg
aaagagagggaaccaaaacaatggctttgtgagcagaactccagtagctc
aggaaataataggaagaattgacaaatgtggtcacacaaaacaatttcac
acagccaagggaacaatcaatgctgtaaatagacagcctacagaatggga
aaaaaaaatcgttgtcatctattcacacaacaggaaattaatatctaccc
tacacaaagaggtaaagtttccaaacatcaaaagaacaagtaatccgaaa
aataaatagacatacgaactgaacagacagttgtcaaaaggagaagcatg
aataactcataatttcatgaaaataggttcaccatgcatagccatcgaga
aaggcaaatcaaaacttcatccaaaaattgtcttgataagtcagaatagt
cattgtcccccaaaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_61007406_61008005
seq2: B6Ng01-150I09.b_44_643 (reverse)

seq1  AAGTAACCTAGACTCAGAGACAACTGCTGCATAGTCTCTATTTTTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACCTAGACTCAGAGACAACTGCTGCATAGTCTCTATTTTTGTGAA  50

seq1  TCCTGGATCTGAATTTTTATGTTTAAATATATAACCCAGGGTAAATGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATCTGAATTTTTATGTTTAAATATATAACCCAGGGTAAATGTAG  100

seq1  AAGCCATTGACATGGGGGAGGAGTTCTAGGGAGTGGGAAAGCAGGACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTGACATGGGGGAGGAGTTCTAGGGAGTGGGAAAGCAGGACTCA  150

seq1  ATGCTATGAAGGAGGTATAATAAGAGGAAAATAGGAGAGAGCTTAACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGAAGGAGGTATAATAAGAGGAAAATAGGAGAGAGCTTAACTGG  200

seq1  GAAAGGTGGAAGGACAATATAGAGGGAGAGATGGGAGGAAAGGTAAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGGAAGGACAATATAGAGGGAGAGATGGGAGGAAAGGTAAATCA  250

seq1  TATTAACAGTGTTTGAAAACACAAAAAAAGATTGACAATAGAAGTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAGTGTTTGAAAACACAAAAAAAGATTGACAATAGAAGTGAGAA  300

seq1  TCAAATAGTGAACGCTGATCTATAATTAAAACTAGCACCCCACACCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGTGAACGCTGATCTATAATTAAAACTAGCACCCCACACCAAGT  350

seq1  TATAAGTATGGAATCAATTACCTAGAAGAGAAGTTAGAACTAAAAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTATGGAATCAATTACCTAGAAGAGAAGTTAGAACTAAAAACCAA  400

seq1  TTGTCTTTAAATCTAAACATTAAATAACGAATTTCACAGAATGAAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTAAATCTAAACATTAAATAACGAATTTCACAGAATGAAGTTGA  450

seq1  CTACTGATAGAAGAAAACATACACCCAGTCTAAGTGTATGAGGAGACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATAGAAGAAAACATACACCCAGTCTAAGTGTATGAGGAGACCCA  500

seq1  GAGAGCAATTGATTATTAAATAAAATGATAATTTCCTGTATCTACTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAATTGATTATTAAATAAAATGATAATTTCCTGTATCTACTATCT  550

seq1  TTACTTCTTTAGATCCTTTTAGTTAGGCATCATACTCCCACCAAGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTTTAGATCCTTTTAGTTAGGCATCATACTCCCACCAAGAATTC  600

seq1: chr16_6123184_6123363
seq2: B6Ng01-150I09.g_862_917 (reverse)

seq1  CACATACACACACATACACACACACACACACGCACGCACGCACGCACGCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CGCACGCACGCACGCATGCATGCACGCGCGCACACGCACACACACAAGCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACACGGAAGCATGCACATACCCAAGCACCCACACACGCATGCAGACCCC  150
                    ||||||| ||  ||| ||||||              
seq2  --------------CACATACACACACACACACACA--------------  22

seq1  CCCACACACACACATA------CACACAATGACTAT  180
        ||||||||||||||         |||||||||||
seq2  --CACACACACACATATTTTGGGGGACAATGACTAT  56