BAC Information

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BAC

Clone NameB6Ng01-150L21
Chromosome3 (Build37)
Map Location 113,918,131 - 113,919,191
singlet/doubletsinglet
Overlap geneCol11a1
Upstream geneOTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150L21.bB6Ng01-150L21.g
ACCDH946744DH946745
length1,1711,050
definitionDH946744|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L21, 5' end.DH946745|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccatgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtggcagc
agatgctggcgtggatgcagagaaagagaaacactcctccattgttggtg
ggattggaagcttgtacaaccactctggaaatcagtcaggcgtttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatatccagaagatgtcccaaccggtaagaaggacacatgctccact
atgttcatagtagccttatttataatagccagaagctggaaagaacccag
atgcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaa
tggagtactacacagctattaaaaggaataaatttatgaaattccatgga
cctggagggcatcatcctgagtgaggtaacacaatcacaaaagaactcaa
atgatatgtactcactgataagtggatattagcccagaaacttagtatac
ctgagatataagatacaatttgctaaacgcatgaaactgaagaagaacga
agaccaaagtgtggacactttgccccttcttagaactggaaacaatcacc
catggaaggagttacagagacaaagtttggagcagagacaaaaggatgga
ccatctagagattgccatatccagagatccatcccataattagcctccaa
acgatgacaccattgcatacactagcaagattttgctgaaaggaccctga
tatagctgtctcttgtgatacttggctggggcctagcaaacacataagta
gatgctcacagtcagctattggatggagcacagcgcccccaatggaggag
ctagagaaagtatccaagagctaaagagatctgcaaccctgtagtgcaac
aacatatgactaaccagtaccctggaactcttgacttctagctgcatatg
catcaaagaatgcctagtcgcatcacttggaagagaaagccatggacatt
gcaactttatatttccaataacagtgaaccgtcaggccaaaaaatggaat
tgggtgtggggtaggggaagt
gaattctttgtttagctctgtaccccatttttaataagtttatttggttc
tctggagtctaacttcttgagttctttgtgtatattggatattagccctc
tattgaatgtaggctttgtaaagatcttttcccaatttgttggttgccat
tttgtcctattgacagagttctatgtcttacagaagctttgtaattttat
gaggtcccatttgtcaattcttgatcttaaagcataagctattggtgtaa
tgttcaggaaaatttcccctgtgcccatgtgctaaaggctctttcaaaac
cattcagtggaaaaaaagacagcattttcaacaaatggttctggtccagt
tatttaatatcttaagtagtattactgttcacaggtattaagttataaat
ttaatctccttacttatacacatgaatccatactaagcaatgacttctaa
tgatgttttctaccagatttaaaatcttctagttatatactgaatataca
ttgtatattatcatctgtttgagttacagtaaccattattgagaagtgtg
tattaattttattttatttttttgtaaagcacatctaaaatacactttca
actcaccagaatcatcattgtaatttgttaattagtaaggttaagtaaac
accatcataaagagggagatttcagatttgcatgaagtcaatctcaatac
tttatttaaattttgttcttttctggaacacagatatttaaatcctgcca
aacaaaatagttggtgaagatgttagaccttaactatttgcactaagaat
attttgctctataaaaacaacattgtgatggatatagagagtgattaata
ttcccctgaggcacaatgcttgatgatgtgggttaaaaaacaaaacaaac
aaaacaaaacaaggaaaaaccatgcttacacagatatatgagccaccccc
cccgcccccaatgcatacaatagaggactgctggttcatattcagtcaga
gatgatgtacctatccctcagagactggagcccaggagttagaaggtcag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113918131_113919191
seq2: B6Ng01-150L21.g_66_1115

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAAGTTTATTTGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAAGTTTATTTGGTTC  50

seq1  TCTGGAGTCTAACTTCTTGAGTTCTTTGTGTATATTGGATATTAGCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCTAACTTCTTGAGTTCTTTGTGTATATTGGATATTAGCCCTC  100

seq1  TATTGAATGTAGGCTTTGTAAAGATCTTTTCCCAATTTGTTGGTTGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATGTAGGCTTTGTAAAGATCTTTTCCCAATTTGTTGGTTGCCAT  150

seq1  TTTGTCCTATTGACAGAGTTCTATGTCTTACAGAAGCTTTGTAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTATTGACAGAGTTCTATGTCTTACAGAAGCTTTGTAATTTTAT  200

seq1  GAGGTCCCATTTGTCAATTCTTGATCTTAAAGCATAAGCTATTGGTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTCAATTCTTGATCTTAAAGCATAAGCTATTGGTGTAA  250

seq1  TGTTCAGGAAAATTTCCCCTGTGCCCATGTGCTAAAGGCTCTTTCAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGAAAATTTCCCCTGTGCCCATGTGCTAAAGGCTCTTTCAAAAC  300

seq1  CATTCAGTGGAAAAAAAGACAGCATTTTCAACAAATGGTTCTGGTCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTGGAAAAAAAGACAGCATTTTCAACAAATGGTTCTGGTCCAGT  350

seq1  TATTTAATATCTTAAGTAGTATTACTGTTCACAGGTATTAAGTTATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATATCTTAAGTAGTATTACTGTTCACAGGTATTAAGTTATAAAT  400

seq1  TTAATCTCCTTACTTATACACATGAATCCATACTAAGCAATGACTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCCTTACTTATACACATGAATCCATACTAAGCAATGACTTCTAA  450

seq1  TGATGTTTTCTACCAGATTTAAAATCTTCTAGTTATATACTGAATATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTTCTACCAGATTTAAAATCTTCTAGTTATATACTGAATATACA  500

seq1  TTGTATATTATCATCTGTTTGAGTTACAGTAACCATTATTGAGAAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTATCATCTGTTTGAGTTACAGTAACCATTATTGAGAAGTGTG  550

seq1  TATTAATTTTATTTTATTTTTTTGTAAAGCACATCTAAAATACACTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTTATTTTATTTTTTTGTAAAGCACATCTAAAATACACTTTCA  600

seq1  ACTCACCAGAATCATCATTGTAATTTGTTAATTAGTAAGGTTAAGTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCAGAATCATCATTGTAATTTGTTAATTAGTAAGGTTAAGTAAAC  650

seq1  ACCATCATAAAGAGGGAGATTTCAGATTTGCATGAAGTCAATCTCAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATAAAGAGGGAGATTTCAGATTTGCATGAAGTCAATCTCAATAC  700

seq1  TTTATTTAAATTTTGTTCTTTTCTGGAACACAGATATTTAAATCCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAATTTTGTTCTTTTCTGGAACACAGATATTTAAATCCTGCCA  750

seq1  AACAAAATAGTTGGTGAAGATGTTAGACCTTAACTATTTGCACTAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATAGTTGGTGAAGATGTTAGACCTTAACTATTTGCACTAAGAAT  800

seq1  ATTTTGCTCTATAAAAACAACATTGTGATGGATATAGAGAGTGATTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTCTATAAAAACAACATTGTGATGGATATAGAGAGTGATTAATA  850

seq1  TTCCCCTGAGGCACAATGCTTGATGATGTGGGTTAAAAAACAAAACAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCCCCTGAGGCACAATGCTTGATGATGTGGGTTAAAAAACAAAAC-AAA  899

seq1  CAAAACAAAAACAAGGAAAAAACCATGCTTACAACAGATAATATGAGCCA  950
      |||||| ||||||||| ||||||||||||||| |||||| ||||||||||
seq2  CAAAAC-AAAACAAGG-AAAAACCATGCTTAC-ACAGAT-ATATGAGCCA  945

seq1  CCCCCCCCGCCCCCCAATGCATACAATAGAGGACTGCTGGGTCCATATTC  1000
      ||||||||| |||||||||||||||||||||||||||| ||| |||||||
seq2  CCCCCCCCG-CCCCCAATGCATACAATAGAGGACTGCT-GGTTCATATTC  993

seq1  AGTCAGAGATGATGTACCTAACCCTCAAGAGACTGGAGGCCCCAGGGAGT  1050
      |||||||||||||||||||| ||||| |||||||||||  |||| |||||
seq2  AGTCAGAGATGATGTACCTATCCCTC-AGAGACTGGAG--CCCA-GGAGT  1039

seq1  TTAGAGGTCAG  1061
      |   |||||||
seq2  TAGAAGGTCAG  1050