BAC Information

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BAC

Clone NameB6Ng01-150P20
Chromosome3 (Build37)
Map Location 87,074,172 - 87,214,557
singlet/doubletdoublet
Overlap geneCd5l, Fcrl1
Upstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2
Downstream geneFcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150P20.bB6Ng01-150P20.g
ACCDH946926DH946927
length771904
definitionDH946926|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P20, 5' end.DH946927|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,213,791 - 87,214,557)(87,074,172 - 87,075,006)
sequence
gaattcagacgctctgtgctctagtaaaaaaagatctgtaagggacaggg
actggaggatgactttcttgctgactgatagtctggcctggaaaactcag
ccttggcttcacagagagaccctgcttccctaggcttctacacagggtca
ggcacacacacacacacacacacacacacacacacacacacacacgcaca
cgcacacgcacacgcacatgcacacgcacacgcacacacacacacacaca
cacacacacacacacacacacacacatctatatgagtaatacacccatgt
gcatgactcttagtttagaaaagcaggggagggctcccctggacaggaga
gatggctcaacagataaaggtactagtttatttttttgaggaaacacgca
gggaggaaggagaaaacccaactgatgctacaagttcacctctgacctcc
acaagggcattgttatttctcctttccccagtacacaagtaaatgtaaaa
acaagttttaaaaaatgagttcttaggtttcagctttccctttctatcca
attccggtagttcactggcaacactgtgtccctggagcagtggggcagga
aggttgctctggccttgaggcatgagtggcacctgctggggctttggaat
gcccagtgactctctgcatgcactgccccccacccccgggtcccaaggct
gtgcatctgggtacactgctattgtattgagggagggggttggctgtggg
tcctttttttagttggaggcc
gaattctctttcttcttaaggctgaataatgttctgctgtgtgtaggtat
acacgtatgtgccatgttttatccattcatgacttgctaaatactttggt
tgcatcttcccccttaatgagaacaacaaataccaagaacaatggcgatg
acctataatgctgtgggtttatgaggccccagtggctaacagctgcaaag
gaggcaactcattcctggcacgtgactcttggtagggatagggtatccct
acatattctcctacggtggagttataaggtaactccatttaagctacttt
tgtatgtatatattttagaaagatactgagaacctatctcaaagacccta
gggaagaacttactattattttgctaagtggacataatattaaactgatt
tctaatgacttatcaccatgcccataggccagtctatctcttaaccctca
tctgagaagtttcttttagcagtagatgatcaacacagaaactcacaact
ggtcaatgtacagagagtaagagactgagaagtgtttagttctggtgtat
atcatctatctatatcacacccttccttctgagggttaggggacagaaag
aatataaaagccagaggtggcagatgactatggtgagatagggtttcctg
gacacagcagagcagttaacacctgtgaacttgtagtagctgtaacaaaa
tatgccagacttgtgcaagccaatcagacaaaaaatgagcatggataggg
caggtgcgcaaaaagtcccatccctagctgaggggcactgccaattgata
gcctctgtgagaggaagagttaattttatttaaaggcatgattattggta
gggtatccatactctaggagatgaccacatatctggacttgatgggctta
agaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87213791_87214557
seq2: B6Ng01-150P20.b_49_819 (reverse)

seq1  GGCCTCC-ACT-AAAAATGGACCCACAGCCAACCCCCTCCCTC-CTACCC  47
      ||||||| ||| ||||| |||||||||||||||||||||||||  |||  
seq2  GGCCTCCAACTAAAAAAAGGACCCACAGCCAACCCCCTCCCTCAATACAA  50

seq1  TAGCAGTGT-CCCAGGTGCACAGCC-TGGGGCCCGGGGGTGGGGGGCAGT  95
      ||||||||| ||||| ||||||||| |||| |||||||||||||||||||
seq2  TAGCAGTGTACCCAGATGCACAGCCTTGGGACCCGGGGGTGGGGGGCAGT  100

seq1  GCATGCAGAGAGTCACTGGGCATTCCAAAGCCCCAGCAGGTGCCACTCAT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGAGAGTCACTGGGCATTCCAAAGCCCCAGCAGGTGCCACTCAT  150

seq1  GCCTCAAGGCCAGAGCAACCTTCCTGCCCCACTGCTCCA-GGACACAGTG  194
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCCTCAAGGCCAGAGCAACCTTCCTGCCCCACTGCTCCAGGGACACAGTG  200

seq1  TTGCCAGTGAACTACCGGAATTGGATAGAAAGGGAAAGCTG-AACCTAAG  243
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGCCAGTGAACTACCGGAATTGGATAGAAAGGGAAAGCTGAAACCTAAG  250

seq1  AACTCATTTTTTAAAACTTGTTTTTACATTTACTTGTGTACTGGGGAAAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTTTTTAAAACTTGTTTTTACATTTACTTGTGTACTGGGGAAAG  300

seq1  GAGAAATAACAATGCCCTTGTGGAGGTCAGAGGTGAACTTGTAGCATCAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAACAATGCCCTTGTGGAGGTCAGAGGTGAACTTGTAGCATCAG  350

seq1  TTGGGTTTTCTCCTTCCTCCCTGCGTGTTTCCTCTGGAAACTGAACTAGT  393
      ||||||||||||||||||||||||||||||||||   ||| | |||||||
seq2  TTGGGTTTTCTCCTTCCTCCCTGCGTGTTTCCTCAAAAAAATAAACTAGT  400

seq1  ACCTTTATCTGTTGAGCCATCTCTCCTGTCCAGGGGAGCCCTCCCCTGCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATCTGTTGAGCCATCTCTCCTGTCCAGGGGAGCCCTCCCCTGCT  450

seq1  TTTAAAAACTAAGAGTCATGCACATGGGTGTATTACTCATATAGATGTGT  493
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAACTAAGAGTCATGCACATGGGTGTATTACTCATATAGATGTGT  500

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGT  550

seq1  GCATGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGT  600

seq1  GTGTGTGTGTGTGTGTGTGCCTGACCCTGTGTAGAAGCCATAAGAGGCAG  643
      |||||||||||||||||||||||||||||||||||||||    || ||||
seq2  GTGTGTGTGTGTGTGTGTGCCTGACCCTGTGTAGAAGCCTAGGGAAGCAG  650

seq1  GGTCTCTCTGTGAAGCCAAGGCTGAGTTTTCCAGGCCAGACTATCAGTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCTGTGAAGCCAAGGCTGAGTTTTCCAGGCCAGACTATCAGTCA  700

seq1  GCAAGCCTCAGTCATCCTCCAGTCCCTGTCCCTTACAGAGCAGTTTGTTA  743
      |||||    |||||||||||||||||||||||||||||| |  ||| |||
seq2  GCAAG--AAAGTCATCCTCCAGTCCCTGTCCCTTACAGATC-TTTTTTTA  747

seq1  CTAGAGCACAGAGCGTCTGAATTC  767
      ||||||||||||||||||||||||
seq2  CTAGAGCACAGAGCGTCTGAATTC  771

seq1: chr3_87074172_87075006
seq2: B6Ng01-150P20.g_67_901

seq1  GAATTCTCTTTCTTCTTAAGGCTGAATAATGTTCTGCTGTGTGTAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTTCTTAAGGCTGAATAATGTTCTGCTGTGTGTAGGTAT  50

seq1  ACACGTATGTGCCATGTTTTATCCATTCATGACTTGCTAAATACTTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTATGTGCCATGTTTTATCCATTCATGACTTGCTAAATACTTTGGT  100

seq1  TGCATCTTCCCCCTTAATGAGAACAACAAATACCAAGAACAATGGCGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTCCCCCTTAATGAGAACAACAAATACCAAGAACAATGGCGATG  150

seq1  ACCTATAATGCTGTGGGTTTATGAGGCCCCAGTGGCTAACAGCTGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAATGCTGTGGGTTTATGAGGCCCCAGTGGCTAACAGCTGCAAAG  200

seq1  GAGGCAACTCATTCCTGGCACGTGACTCTTGGTAGGGATAGGGTATCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACTCATTCCTGGCACGTGACTCTTGGTAGGGATAGGGTATCCCT  250

seq1  ACATATTCTCCTACGGTGGAGTTATAAGGTAACTCCATTTAAGCTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCTCCTACGGTGGAGTTATAAGGTAACTCCATTTAAGCTACTTT  300

seq1  TGTATGTATATATTTTAGAAAGATACTGAGAACCTATCTCAAAGACCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATATATTTTAGAAAGATACTGAGAACCTATCTCAAAGACCCTA  350

seq1  GGGAAGAACTTACTATTATTTTGCTAAGTGGACATAATATTAAACTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAACTTACTATTATTTTGCTAAGTGGACATAATATTAAACTGATT  400

seq1  TCTAATGACTTATCACCATGCCCATAGGCCAGTCTATCTCTTAACCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGACTTATCACCATGCCCATAGGCCAGTCTATCTCTTAACCCTCA  450

seq1  TCTGAGAAGTTTCTTTTAGCAGTAGATGATCAACACAGAAACTCACAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAGTTTCTTTTAGCAGTAGATGATCAACACAGAAACTCACAACT  500

seq1  GGTCAATGTACAGAGAGTAAGAGACTGAGAAGTGTTTAGTTCTGGTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATGTACAGAGAGTAAGAGACTGAGAAGTGTTTAGTTCTGGTGTAT  550

seq1  ATCATCTATCTATATCACACCCTTCCTTCTGAGGGTTAGGGGACAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTATCTATATCACACCCTTCCTTCTGAGGGTTAGGGGACAGAAAG  600

seq1  AATATAAAAGCCAGAGGTGGCAGATGACTATGGTGAGATAGGGTTTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGCCAGAGGTGGCAGATGACTATGGTGAGATAGGGTTTCCTG  650

seq1  GACACAGCAGAGCAGTTAACACCTGTGAACTTGTAGTAGCTGTAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCAGAGCAGTTAACACCTGTGAACTTGTAGTAGCTGTAACAAAA  700

seq1  TATGCCAGACTTGTGCAAGCCAATCAGACAAAAAATGAGCATGGATAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGACTTGTGCAAGCCAATCAGACAAAAAATGAGCATGGATAGGG  750

seq1  CAGGTGCGCAAAAAGTCCCATCCCTAGCTGAGGGGCACTGCCAATTGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCGCAAAAAGTCCCATCCCTAGCTGAGGGGCACTGCCAATTGATA  800

seq1  GCCTCTGTGAGAGGAAGAGTTAATTTTATTTAAAG  835
      |||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTGAGAGGAAGAGTTAATTTTATTTAAAG  835