BAC Information

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BAC

Clone NameB6Ng01-151B20
Chromosome3 (Build37)
Map Location 140,961,503 - 141,144,436
singlet/doubletdoublet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2
Downstream geneLOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151B20.bB6Ng01-151B20.g
ACCDH947020DH947021
length1,1261,077
definitionDH947020|Mus musculus domesticus DNA, BAC clone: B6Ng01-151B20, 5' end.DH947021|Mus musculus domesticus DNA, BAC clone: B6Ng01-151B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,961,503 - 140,962,630)(141,143,345 - 141,144,436)
sequence
gaattctaaataattccaaacattcctctgtgtgtcttgtcaaatgagca
ttccctgaggcatgctaatgatcacagcatctgatgacattggtgtcaca
agtgatcccagcgatatcccctttgatattaacctaccttttgaatggat
tttctctattctcacttaagcactaagagagctagttctgttcactaccc
atgcctttatcctgaagttttgtgaccttgaaatagttagaaaggaggaa
attaactaacttagatttagttttgcttacactgaagcaaatatcttcct
tctccttggcttctttgtgttgttatccatcagatcaaaacttcaaagaa
aaaggctgatggatcaaccagtcatttactggaactgaatttctgcttgc
caccagcttttctacccagatgatcctttcatttcgattctatctgtatc
tttgatgtgctcagttcacgcatggagagaaaattatagtgtagtctttg
ctcagaaaatatattccatcatattttaacattgtaggaaatgtaaaaca
ttcctccagtgtgaacattcagaatatgtttaaacagaagtctcaagagc
agaaattaataaataagatggttgtatctgaatcattgaacgtttcagtt
gctaggcatctggatggaccagatcaattttacaaggaagactgcagact
gagtaccaactgcaacacatatattctaagtctccatcacatgacaataa
acaagaatataggggattcagagtgcaataagccaagcagtgtcaaagaa
tttaggatctgataatatgtaagtctgattacatgttcatgtgtgagatg
aagataatagcagcagggttcaccctgcatttgtattgagattgtacaag
atgatatatgtgtcccggaagtcttcatatcacagtagttttataagcag
ccaactattagagttatattattagcagcttagactgctataaattacac
ctgctgctacaggcctcaggacattcacaaggccaccattagtgcccagt
gtgtgctgaagaaagtgttcaaaaaaaattgtactgcctttctttgtggc
tacgcgaaagttaaagtaaagaatgc
gaattcctgaacacatgactggtaatccaataccctttttttttctctcc
agttagtttctttctcttaaatattctatcaatttctaatactaataatg
cataggaatctgtccttggtatatgggcatttgaaagccccaccaaacct
gctggtacctaatggatggtggatactgaggcttcagtccatctgggttt
ccgtctagatattcacacccacctcacttgatccaggagttcttaaataa
agattcaaggagagatgctaattctactaccgtgaattgtcagaaaaagc
tacgctctgttatttatgcaaaacactcaaattcatgcagtaccattcaa
aaatggatatcacataccacccttgtgtcaaatcctaatttgtgtgctaa
ggaaaggagggtgattaggcactgtgttgacatgtatctggaaacacaga
aagaaaagggcagtccagctgggtaggaaaggtcatgttccaaaggagtg
gactaaaactaaaacgaacagtgttggtgggaggagccaaaaaaaaaaaa
aaaaagattgatcacaagaaatgaatggccaaagatgaagtaaaagagaa
ctggagctaagcaagggtctggctctaaaggctggggaaggggctgtcat
attagggctacactgagactataacagttgatgccctgtgtggggagact
ataaccacagaaaagtttgtaagagttaagagggaagtataagcacaaat
cctgacagctgtgtgaattttcaaacctccataaaggcatgagtttgaag
agaaagagctccttagatggccctgcacttacataatttccctttgcagg
tcagagggatggggcaaggaaagtgctccacttcagtgcatagatatcca
tggccatattaggtagcatgtatctttcctacacactgcactaagtactt
gagtatattttattgctagcatatatatataggaaataggaaatagtttc
tgctttcatactcggattctgcatggccttctctccgttcatgaaatatg
gtaatcatatattttggggagaatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140961503_140962630
seq2: B6Ng01-151B20.b_45_1170

seq1  GAATTCTAAATAATTCCAAACATTCCTCTGTGTGTCTTGTCAAATGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATAATTCCAAACATTCCTCTGTGTGTCTTGTCAAATGAGCA  50

seq1  TTCCCTGAGGCATGCTAATGATCACAGCATCTGATGACATTGGTGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAGGCATGCTAATGATCACAGCATCTGATGACATTGGTGTCACA  100

seq1  AGTGATCCCAGCGATATCCCCTTTGATATTAACCTACCTTTTGAATGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCCCAGCGATATCCCCTTTGATATTAACCTACCTTTTGAATGGAT  150

seq1  TTTCTCTATTCTCACTTAAGCACTAAGAGAGCTAGTTCTGTTCACTACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTATTCTCACTTAAGCACTAAGAGAGCTAGTTCTGTTCACTACCC  200

seq1  ATGCCTTTATCCTGAAGTTTTGTGACCTTGAAATAGTTAGAAAGGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTATCCTGAAGTTTTGTGACCTTGAAATAGTTAGAAAGGAGGAA  250

seq1  ATTAACTAACTTAGATTTAGTTTTGCTTACACTGAAGCAAATATCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAACTTAGATTTAGTTTTGCTTACACTGAAGCAAATATCTTCCT  300

seq1  TCTCCTTGGCTTCTTTGTGTTGTTATCCATCAGATCAAAACTTCAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGGCTTCTTTGTGTTGTTATCCATCAGATCAAAACTTCAAAGAA  350

seq1  AAAGGCTGATGGATCAACCAGTCATTTACTGGAACTGAATTTCTGCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGATGGATCAACCAGTCATTTACTGGAACTGAATTTCTGCTTGC  400

seq1  CACCAGCTTTTCTACCCAGATGATCCTTTCATTTCGATTCTATCTGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTTTTCTACCCAGATGATCCTTTCATTTCGATTCTATCTGTATC  450

seq1  TTTGATGTGCTCAGTTCACGCATGGAGAGAAAATTATAGTGTAGTCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTGCTCAGTTCACGCATGGAGAGAAAATTATAGTGTAGTCTTTG  500

seq1  CTCAGAAAATATATTCCATCATATTTTAACATTGTAGGAAATGTAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAATATATTCCATCATATTTTAACATTGTAGGAAATGTAAAACA  550

seq1  TTCCTCCAGTGTGAACATTCAGAATATGTTTAAACAGAAGTCTCAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAGTGTGAACATTCAGAATATGTTTAAACAGAAGTCTCAAGAGC  600

seq1  AGAAATTAATAAATAAGATGGTTGTATCTGAATCATTGAACGTTTCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAATAAATAAGATGGTTGTATCTGAATCATTGAACGTTTCAGTT  650

seq1  GCTAGGCATCTGGATGGACCAGATCAATTTTACAAGGAAGACTGCAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCATCTGGATGGACCAGATCAATTTTACAAGGAAGACTGCAGACT  700

seq1  GAGTACCAACTGCAACACATATATTCTAAGTCTCCATCACATGACAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCAACTGCAACACATATATTCTAAGTCTCCATCACATGACAATAA  750

seq1  ACAAGAATATAGGGGATTCAGAGTGCAATAAGCCAAGCAGTGTCAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATATAGGGGATTCAGAGTGCAATAAGCCAAGCAGTGTCAAAGAA  800

seq1  TTTAGGATCTGATAATATGTAAGTCTGATTACATGTTCATGTGTGAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATCTGATAATATGTAAGTCTGATTACATGTTCATGTGTGAGATG  850

seq1  AAGATAATAGCAGCAGGGTTCACCCTGCATTTGTATTGAGATTGTACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATAGCAGCAGGGTTCACCCTGCATTTGTATTGAGATTGTACAAG  900

seq1  ATGATATATGTGTCCCGGAAGTCTTCATATCACAGTAGTTTTATAAGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATATGTGTCCCGGAAGTCTTCATATCACAGTAGTTTTATAAGCAG  950

seq1  CCAACTATTAGAGTTATAATTATTAGCAGGCTTAGACTGCTATAAATTAC  1000
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  CCAACTATTAGAGTTAT-ATTATTAGCA-GCTTAGACTGCTATAAATTAC  998

seq1  ACCTGCTGCTACAGGCCTCCAGGACATTCACAAGGCCACCATTAGTGCCC  1050
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCTGCTGCTACAGGCCT-CAGGACATTCACAAGGCCACCATTAGTGCCC  1047

seq1  AGTGTGTGCTGAAGAAAGTG-TCAAAAAAAATTGTTACTGGCTTTC-TTG  1098
      |||||||||||||||||||| ||||||||||||| ||||| ||||| |||
seq2  AGTGTGTGCTGAAGAAAGTGTTCAAAAAAAATTG-TACTGCCTTTCTTTG  1096

seq1  TGGCTACGCAGAGGTAAAAGTAAAGAATGC  1128
      |||||||||  | || ||||||||||||||
seq2  TGGCTACGCGAAAGTTAAAGTAAAGAATGC  1126

seq1: chr3_141143345_141144436
seq2: B6Ng01-151B20.g_69_1145 (reverse)

seq1  TACA-TCTCCCCAGAATATATGATTTACCATTATTTCATTGAAAGGGTAG  49
      |||| |||||||| ||||||||| |||||| ||||||| |||| ||  ||
seq2  TACATTCTCCCCAAAATATATGA-TTACCA-TATTTCA-TGAACGG--AG  45

seq1  AGAA-GCCATGCAGAAATCCGAGTTAATGAAAGCAGAAACTATTTCCTAT  98
      |||| ||||||||| |||||||||  ||||||||||||||||||||||| 
seq2  AGAAGGCCATGCAG-AATCCGAGT--ATGAAAGCAGAAACTATTTCCTA-  91

seq1  TTTCCTATATAATTATATGCTAGCAAATTAAATATACTCAAGTACTTAGT  148
      |||||||||||  ||||||||||| ||| |||||||||||||||||||||
seq2  TTTCCTATATA--TATATGCTAGC-AATAAAATATACTCAAGTACTTAGT  138

seq1  GGCAGTGTGTTAGGAAAGATACATGCTACCTAAATATGGCCATGGATATC  198
       |||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  -GCAGTGTG-TAGGAAAGATACATGCTACCT-AATATGGCCATGGATATC  185

seq1  TATTGCACTGAAGTGGAGCACTTTTCCTTGCCCCATCCCTCTGACCTGCA  248
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TA-TGCACTGAAGTGGAGCAC-TTTCCTTGCCCCATCCCTCTGACCTGCA  233

seq1  AAGGGAAATTATGTAAGTGCAGGGCCATCTAAGGAGCTCTTTCTCTTCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAATTATGTAAGTGCAGGGCCATCTAAGGAGCTCTTTCTCTTCAA  283

seq1  ACTCATGCCTTTATGGAGGTTTGAAAATTCACACAGCTGTCAGGATTTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGCCTTTATGGAGGTTTGAAAATTCACACAGCTGTCAGGATTTGT  333

seq1  GCTTATACTTCCCTCTTAACTCTTACAAACTTTTCTGTGGTTATAGTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATACTTCCCTCTTAACTCTTACAAACTTTTCTGTGGTTATAGTCTC  383

seq1  CCCACACAGGGCATCAACTGTTATAGTCTCAGTGTAGCCCTAATATGACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACAGGGCATCAACTGTTATAGTCTCAGTGTAGCCCTAATATGACA  433

seq1  GCCCCTTCCCCAGCCTTTAGAGCCAGACCCTTGCTTAGCTCCAGTTCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCCCCAGCCTTTAGAGCCAGACCCTTGCTTAGCTCCAGTTCTCT  483

seq1  TTTACTTCATCTTTGGCCATTCATTTCTTGTGATCAATCTTTTTTTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCATCTTTGGCCATTCATTTCTTGTGATCAATCTTTTTTTTTTT  533

seq1  TTTTTTGGCTCCTCCCACCAACACTGTTCGTTTTAGTTTTAGTCCACTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGCTCCTCCCACCAACACTGTTCGTTTTAGTTTTAGTCCACTCC  583

seq1  TTTGGAACATGACCTTTCCTACCCAGCTGGACTGCCCTTTTCTTTCTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACATGACCTTTCCTACCCAGCTGGACTGCCCTTTTCTTTCTGTG  633

seq1  TTTCCAGATACATGTCAACACAGTGCCTAATCACCCTCCTTTCCTTAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGATACATGTCAACACAGTGCCTAATCACCCTCCTTTCCTTAGCA  683

seq1  CACAAATTAGGATTTGACACAAGGGTGGTATGTGATATCCATTTTTGAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTAGGATTTGACACAAGGGTGGTATGTGATATCCATTTTTGAAT  733

seq1  GGTACTGCATGAATTTGAGTGTTTTGCATAAATAACAGAGCGTAGCTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGCATGAATTTGAGTGTTTTGCATAAATAACAGAGCGTAGCTTTT  783

seq1  TCTGACAATTCACGGTAGTAGAATTAGCATCTCTCCTTGAATCTTTATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAATTCACGGTAGTAGAATTAGCATCTCTCCTTGAATCTTTATTT  833

seq1  AAGAACTCCTGGATCAAGTGAGGTGGGTGTGAATATCTAGACGGAAACCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCCTGGATCAAGTGAGGTGGGTGTGAATATCTAGACGGAAACCC  883

seq1  AGATGGACTGAAGCCTCAGTATCCACCATCCATTAGGTACCAGCAGGTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACTGAAGCCTCAGTATCCACCATCCATTAGGTACCAGCAGGTTT  933

seq1  GGTGGGGCTTTCAAATGCCCATATACCAAGGACAGATTCCTATGCATTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCTTTCAAATGCCCATATACCAAGGACAGATTCCTATGCATTAT  983

seq1  TAGTATTAGAAATTGATAGAATATTTAAGAGAAAGAAACTAACTGGAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTAGAAATTGATAGAATATTTAAGAGAAAGAAACTAACTGGAGAG  1033

seq1  AAAAAAAAAGGGTATTGGATTACCAGTCATGTGTTCAGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGGGTATTGGATTACCAGTCATGTGTTCAGGAATTC  1077