BAC Information

Click to search

BAC

Clone NameB6Ng01-151D11
Chromosome3 (Build37)
Map Location 102,678,404 - 102,831,959
singlet/doubletdoublet
Overlap geneSycp1, LOC100043517, Nr1h5, 5730470L24Rik, Csde1
Upstream geneSlc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb, Tspan2, Tshb, LOC668425
Downstream geneNras, Ampd1, Dennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151D11.bB6Ng01-151D11.g
ACCDH947098DH947099
length1,1241,152
definitionDH947098|Mus musculus domesticus DNA, BAC clone: B6Ng01-151D11, 5' end.DH947099|Mus musculus domesticus DNA, BAC clone: B6Ng01-151D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,830,826 - 102,831,959)(102,678,404 - 102,679,582)
sequence
gaattctgtagaccaagctggcctcaaactcagggatcgacctgcctctg
cctcctgagtgatggaattaaaagcatggactctcatggaattttttact
tttttaagtcttgcttcaagtcaagacctctggcatggatggacaatgac
aagtgtggtgtatttcagaggaactgactaggtcagcctggatagaagag
agggtcggtaacagtgggaagaaagctactgagacaggtgcagtggaacc
agattatgagagagaaggcgctcctgcagtctgtgttctgacagactacc
agggcacatgcacatatatgtatatgtgcccacacatatacacacaaaat
aaaatgcaatagaaaattgttacaagccactgaatgaaatggttcagcat
gtaaagacttttccaccaagattcccaggacccacgtggtgggagagagc
tgacttagcaagctgtcctctgcaacctacacaattgtgtacctgcacac
tgataaattcaagtacaaagaaaataaatgtaaaaacgagtattatttta
gatgaggtttttcctatgttgcctaggctggtcttgaattcttgtcccca
gggaattttcccacaatctcacctcccaagatgctaggaatacaggtgca
cattacatttggcaactgttttgtatgaaaagaaaaatagtaaacaagtt
gaaagataatattttcatttgaaaaacattacaaaacaagaatggtgcca
agccagtaatatggcttattgaataaaggtatttacttggtgcacaaggc
tgaaaacttgagttcaatccctgggaacccctgtaaaagtagacagagga
aaaaaatccaaagttgtcttctgacttccataacttgacccctgtacctt
ggcatactcataatcaaatacacaatagttagggcaacaggtgactataa
ggtgatctagatgtggtaggacatgcccacaattccacaactatgtagag
taaccattgttttcagaaacaaaggctgggcgatgaagccatgccttctg
atctagcacttggagagcagagacagcagatctctgtgcagttcagtcag
gcttgttacatgagtcaggacagc
gaattcaatatctttcttttatattcagagatccagtttgaacagcacca
ttatatagaagttgaacattttttatttattatttgattctcaaaatact
caatattattaatgtttgatatataaaatgcatttaagtaataaaacatt
aagaaaaatgctgtcttcttcattactcattattctctcattctcatttt
tgagattctaatgttattaaaattggaagagaagcatatgatatcctacc
tccacagaattccaattcctcttcatactaagccacttttcaatatgtta
cttggtggggttatttcattagaatacatgcaaaactgaattaaactgta
ttagttcagctctcttattctcttattctcttccctgtcttccttctccg
tcccttctttctccatttctctccccactgtctttccatgtagtattcat
ggccggccccgccccgcccccttctgcctttctctgcctctactcctttc
aactctcccatcccctaaataaactctattccacactttttttaaaaagt
atattagacaatggaacatcttaagtaccataagagcagcacagatttct
aagaagccctaaacctgctctaatacccattagagtaaaagaactctcac
acaaacaaaaatatagtctccttcattagcaccaaatattgttaaatatt
tttcttataatactcacatatggccacagtcagctaatattctggatata
actgggattacagggatgtaccactgtttctggctacatagtttatctaa
aattttgcacgtccaaagctaaagactgagaataatttcaaataaaatta
agaaaaaacagcttcataaaaaatggaaagcatttctctgatttctcaca
ctgatttgacacattggtagcaggcttggtaacatatgtctttaatacta
gcactaaaggaagcagagtcaagcccatctctctaggttcaaggcagcct
ggtcactattccagatagtcagatacacctgtaggactctgttctcaata
ataatgaaaataacaatcactgcacagtaactatctttaatgagttttat
ttataaattatgcattttatttgcgaagccccttagatcctattatagct
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_102830826_102831959
seq2: B6Ng01-151D11.b_48_1171 (reverse)

seq1  GCTGTCCTGGAACTCAATTTGTAGACCAGGCTGGCCTGGACTGCACAGAG  50
      |||||||||  |||||   |||| || || || | ||| |||||||||||
seq2  GCTGTCCTG--ACTCA---TGTA-ACAAGCCT-GACTGAACTGCACAGAG  43

seq1  ATCTGCCTGTCTCTGCCTCTCC-AGTGCTAGGATCAG-AGGCATGGCTTC  98
      ||||| ||||||||| |||||| ||||||| |||||| ||||||||||||
seq2  ATCTG-CTGTCTCTG-CTCTCCAAGTGCTA-GATCAGAAGGCATGGCTTC  90

seq1  ATTCCGCCCAGCCTTTGTTTTCTGAAA--CATGGTTACTCTACATAGGTG  146
      ||  ||||||||||||| |||||||||   ||||||||||||||||| ||
seq2  AT--CGCCCAGCCTTTG-TTTCTGAAAACAATGGTTACTCTACATAGTTG  137

seq1  TGGAATTGTGGGCATGTCCTACCACATCTAGATCACCTTATAGTCACCCT  196
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGAATTGTGGGCATGTCCTACCACATCTAGATCACCTTATAGTCA-CCT  186

seq1  GTTGCCCTAACTATTGTGTATTTGATTATGAGTATGCCAAGGTACAGGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTAACTATTGTGTATTTGATTATGAGTATGCCAAGGTACAGGGG  236

seq1  TCAAGTTATGGAAGTCAGAAGACAACTTTGGATTTTTTTCCTCTGTCTAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTATGGAAGTCAGAAGACAACTTTGGATTTTTTTCCTCTGTCTAC  286

seq1  TTTTACAGGGGTTCCCAGGGATTGAACTCAAGTTTTCAGCCTTGTGCACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGGGGTTCCCAGGGATTGAACTCAAGTTTTCAGCCTTGTGCACC  336

seq1  AAGTAAATACCTTTATTCAATAAGCCATATTACTGGCTTGGCACCATTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATACCTTTATTCAATAAGCCATATTACTGGCTTGGCACCATTCT  386

seq1  TGTTTTGTAATGTTTTTCAAATGAAAATATTATCTTTCAACTTGTTTACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTAATGTTTTTCAAATGAAAATATTATCTTTCAACTTGTTTACT  436

seq1  ATTTTTCTTTTCATACAAAACAGTTGCCAAATGTAATGTGCACCTGTATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTTCATACAAAACAGTTGCCAAATGTAATGTGCACCTGTATT  486

seq1  CCTAGCATCTTGGGAGGTGAGATTGTGGGAAAATTCCCTGGGGACAAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATCTTGGGAGGTGAGATTGTGGGAAAATTCCCTGGGGACAAGAA  536

seq1  TTCAAGACCAGCCTAGGCAACATAGGAAAAACCTCATCTAAAATAATACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACCAGCCTAGGCAACATAGGAAAAACCTCATCTAAAATAATACT  586

seq1  CGTTTTTACATTTATTTTCTTTGTACTTGAATTTATCAGTGTGCAGGTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTACATTTATTTTCTTTGTACTTGAATTTATCAGTGTGCAGGTAC  636

seq1  ACAATTGTGTAGGTTGCAGAGGACAGCTTGCTAAGTCAGCTCTCTCCCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTGTAGGTTGCAGAGGACAGCTTGCTAAGTCAGCTCTCTCCCAC  686

seq1  CACGTGGGTCCTGGGAATCTTGGTGGAAAAGTCTTTACATGCTGAACCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGGTCCTGGGAATCTTGGTGGAAAAGTCTTTACATGCTGAACCAT  736

seq1  TTCATTCAGTGGCTTGTAACAATTTTCTATTGCATTTTATTTTGTGTGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAGTGGCTTGTAACAATTTTCTATTGCATTTTATTTTGTGTGTA  786

seq1  TATGTGTGGGCACATATACATATATGTGCATGTGCCCTGGTAGTCTGTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGGGCACATATACATATATGTGCATGTGCCCTGGTAGTCTGTCA  836

seq1  GAACACAGACTGCAGGAGCGCCTTCTCTCTCATAATCTGGTTCCACTGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGACTGCAGGAGCGCCTTCTCTCTCATAATCTGGTTCCACTGCA  886

seq1  CCTGTCTCAGTAGCTTTCTTCCCACTGTTACCGACCCTCTCTTCTATCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAGTAGCTTTCTTCCCACTGTTACCGACCCTCTCTTCTATCCA  936

seq1  GGCTGACCTAGTCAGTTCCTCTGAAATACACCACACTTGTCATTGTCCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCTAGTCAGTTCCTCTGAAATACACCACACTTGTCATTGTCCAT  986

seq1  CCATGCCAGAGGTCTTGACTTGAAGCAAGACTTAAAAAAGTAAAAAATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAGAGGTCTTGACTTGAAGCAAGACTTAAAAAAGTAAAAAATTC  1036

seq1  CATGAGAGTCCATGCTTTTAATTCCATCACTCAGGAGGCAGAGGCAGGTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGTCCATGCTTTTAATTCCATCACTCAGGAGGCAGAGGCAGGTC  1086

seq1  GATCCCTGAGTTTGAGGCCAGCTTGGTCTACAGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGAGTTTGAGGCCAGCTTGGTCTACAGAATTC  1124

seq1: chr3_102678404_102679582
seq2: B6Ng01-151D11.g_68_1219

seq1  GAATTCAATATCTTTCTTTTATATTCAGAGATCCAGTTTGAACAGCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCTTTCTTTTATATTCAGAGATCCAGTTTGAACAGCACCA  50

seq1  TTATATAGAAGTTGAACATTTTTTATTTATTATTTGATTCTCAAAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGAAGTTGAACATTTTTTATTTATTATTTGATTCTCAAAATACT  100

seq1  CAATATTATTAATGTTTGATATATAAAATGCATTTAAGTAATAAAACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTATTAATGTTTGATATATAAAATGCATTTAAGTAATAAAACATT  150

seq1  AAGAAAAATGCTGTCTTCTTCATTACTCATTATTCTCTCATTCTCATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGCTGTCTTCTTCATTACTCATTATTCTCTCATTCTCATTTT  200

seq1  TGAGATTCTAATGTTATTAAAATTGGAAGAGAAGCATATGATATCCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCTAATGTTATTAAAATTGGAAGAGAAGCATATGATATCCTACC  250

seq1  TCCACAGAATTCCAATTCCTCTTCATACTAAGCCACTTTTCAATATGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAATTCCAATTCCTCTTCATACTAAGCCACTTTTCAATATGTTA  300

seq1  CTTGGTGGGGTTATTTCATTAGAATACATGCAAAACTGAATTAAACTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGGGTTATTTCATTAGAATACATGCAAAACTGAATTAAACTGTA  350

seq1  TTAGTTCAGCTCTCTTATTCTCTTATTCTCTTCCCTGTCTTCCTTCTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCAGCTCTCTTATTCTCTTATTCTCTTCCCTGTCTTCCTTCTCCG  400

seq1  TCCCTTCTTTCTCCATTTCTCTCCCCACTGTCTTTCCATGTAGTATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTTCTCCATTTCTCTCCCCACTGTCTTTCCATGTAGTATTCAT  450

seq1  GGCCGGCCCCGCCCCGCCCCCTTCTGCCTTTCTCTGCCTCTACTCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGCCCCGCCCCGCCCCCTTCTGCCTTTCTCTGCCTCTACTCCTTTC  500

seq1  AACTCTCCCATCCCCTAAATAAACTCTATTCCACACTTTTTTTAAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCCATCCCCTAAATAAACTCTATTCCACACTTTTTTTAAAAAGT  550

seq1  ATATTAGACAATGGAACATCTTAAGTACCATAAGAGCAGCACAGATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGACAATGGAACATCTTAAGTACCATAAGAGCAGCACAGATTTCT  600

seq1  AAGAAGCCCTAAACCTGCTCTAATACCCATTAGAGTAAAAGAACTCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCCTAAACCTGCTCTAATACCCATTAGAGTAAAAGAACTCTCAC  650

seq1  ACAAACAAAAATATAGTCTCCTTCATTAGCACCAAATATTGTTAAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAATATAGTCTCCTTCATTAGCACCAAATATTGTTAAATATT  700

seq1  TTTCTTATAATACTCACATATGGCCACAGTCAGCTAATATTCTGGATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATAATACTCACATATGGCCACAGTCAGCTAATATTCTGGATATA  750

seq1  ACTGGGATTACAGGGATGTACCACTGTTTCTGGCTACATAGTTTATCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATTACAGGGATGTACCACTGTTTCTGGCTACATAGTTTATCTAA  800

seq1  AATTTTGCACGTCCAAAGCTAAAGACTGAGAATAATTTCAAAATAAAATT  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATTTTGCACGTCCAAAGCTAAAGACTGAGAATAATTTC-AAATAAAATT  849

seq1  AAGAAAAAACAGCTTCATAAAAAATGGAAAGCATTTCTCTGATTTCTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAACAGCTTCATAAAAAATGGAAAGCATTTCTCTGATTTCTCAC  899

seq1  ACTGATTTGACACATTGGTAGCAGGCTTGGTAACATATGTCTTTAATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTGACACATTGGTAGCAGGCTTGGTAACATATGTCTTTAATACT  949

seq1  AGCACT-AAGGAAGCAGAGTCAAGCCCATCTCTCTAGGTTCAAAGCCAGC  999
      |||||| |||||||||||||||||||||||||||||||||| ||| ||||
seq2  AGCACTAAAGGAAGCAGAGTCAAGCCCATCTCTCTAGGTTC-AAGGCAGC  998

seq1  CTGGTTCACTATTCCAGAATAGTCAAGGATACA-CTGTAAGACTCTG-TC  1047
      |||| |||||||||||| |||||||  |||||| ||||| ||||||| ||
seq2  CTGG-TCACTATTCCAG-ATAGTCA--GATACACCTGTAGGACTCTGTTC  1044

seq1  TCAATAAATAAATGAAAATAAACAAAAACCACTGCAACAGGTAAAACTAT  1097
      |||||||   |||||||||    || || |||||| ||||    ||||||
seq2  TCAATAA--TAATGAAAAT----AACAATCACTGC-ACAG---TAACTAT  1084

seq1  CTTTACATGAAATTTTTATTTATTAAAAATTATGCATTTTTATTTTGGCA  1147
      ||||| |||  | ||||||||||   |||||||||| ||||||||  || 
seq2  CTTTA-ATG--AGTTTTATTTAT---AAATTATGCA-TTTTATTT--GC-  1124

seq1  GAAAGGCCACTTAGATCCTCATTATGAGCTTC  1179
      |||  ||| |||||||||| ||||| ||||||
seq2  GAA--GCCCCTTAGATCCT-ATTAT-AGCTTC  1152