BAC Information

Click to search

BAC

Clone NameB6Ng01-151F19
Chromosome3 (Build37)
Map Location 129,996,385 - 130,149,153
singlet/doubletdoublet
Overlap geneCol25a1
Upstream geneEnpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845
Downstream geneAgxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151F19.bB6Ng01-151F19.g
ACCDH947197DH947198
length1,1081,110
definitionDH947197|Mus musculus domesticus DNA, BAC clone: B6Ng01-151F19, 5' end.DH947198|Mus musculus domesticus DNA, BAC clone: B6Ng01-151F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,996,385 - 129,997,503)(130,148,023 - 130,149,153)
sequence
gaattcatcttcagggcccagcttagacatcactggctcaggcaggtttt
cttgccccatctcctgcccgtggagttgtgttcctgccaagtgctttatc
cttattctatttgatcacattttaatgcattcacttgtcgaagtatctgt
ttcttcttttatgctgtgaggatacgactataatactattgtttactcct
tttatcaccatccgttagcacaatccctggaacaacagatactcactgta
catcgagtggatggagggagtgagcttgcagcccatgttaggtctgaaaa
tgcctgtaactgttctatcatgatctaatctcttgaagagaaatgagctt
ttaagccttctcttttgtatcctttccttaagattcctccagctttataa
aaacagacccttctcttccttaggaactcatttattggcctgtttattta
tttatttatttatttatttatttattttatcactggtttagtattatagt
aattattataatgaaatgcttgaggccaggcaacttatgaagaagagtgt
tttagttactttgtggtttttggaggctgagaatccagacagcatagtgc
tagctctgacaggggccctcctggctacaccatctcatggcaagcaacat
taaggcaaaagtgggtagatgggaagagatcacatggtgcaatagggatc
cagcaactgacttaggaccccaacagttagaactgtgttaactccctctg
aggactcattccgaatggcctattaacctactaggctgcacatgttaaag
atcctgctgtttcttaacatcaccacttgtaggaacaaatatctaaccca
tgaactcaatgggggacttcctgaccatatccggaccataatagacctta
ctaattgagtgatacggcccaagccgcactgctgtggctccttctgtctt
atacacctcctcctttcgagaaaccgtcactggggcagatcagagagctg
agcatgggcagaagcgaacttctccatcagagcaaagcactttgagctgt
ctctagagacctcagtacctccacacaattgcttctggtgagcatggaag
tggtgacc
gaattcttacggcctgatgtgtgcgtgtgcacatgcatgcacatagggca
cagagaaagaacaggtacatctatttgagtttgggtgcaggcattgtctt
ttggtagatttgtatgaaatacttggaaccaatggtcatctttataatgt
tgttattcactcagagagctgcttctcagggtaagcgagagaatgtataa
attacagcctgtaagtacctgagttcacaccgtggttctgccactgttac
cctgggcaaaaatatttgtttctaagtcttgctttttttctgtttataga
atgagaaaaacacaagtatctagtcataggattgttatttgcttttatga
tgcctaagtgtggataaagtgtgaaaagtctgttcacgtagtacaataca
gactagagcagaggacttctttgaatcttactccagccacttagacaatg
ttaacagggccgtggcgctttactgcgaatgccttacataacatatgaaa
tcatagtaatcagccatgacaggggctcattacattttcttcatgttatc
ttattaatccacatcacaatcacagtgagagacagtggttaaaatctgtt
aaaatctgatccacccaacttggtcctagccccagtgagccatggtttaa
ctgcatcacccactcctcctggttttcttcctgaattacccacttcgctg
aactggctatagcctagagatgatgtgcacaactcaggcggtatatgagt
tccctttgccttgctgtaaccaaatgcctgtacaagatacaactcagggt
agaaaggagtctcacctgagggaagccatttcatcatggctgggaaggga
actagcaggcatactgtgtccacagtcagatgcacagaggtgaagactgg
tgctatctgtgcaccactattccgtctaggctctcagcccatgggacagt
gccatccacatttaggcgcgtctctcttctgcagaaacattttcatcaaa
cacccactactgtgtctcctaagtaatgattcatacttttcaatcatttt
ataaggcggaggtagctatccactcccctagttgtcacactcagggattt
aagtattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_129996385_129997503
seq2: B6Ng01-151F19.b_44_1151

seq1  GAATTCATCTTCAGGGCCCAGCTTAGACATCACTGGCTCAGGCAGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCAGGGCCCAGCTTAGACATCACTGGCTCAGGCAGGTTTT  50

seq1  CTTGCCCCATCTCCTGCCCGTGGAGTTGTGTTCCTGCCAAGTGCTTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCATCTCCTGCCCGTGGAGTTGTGTTCCTGCCAAGTGCTTTATC  100

seq1  CTTATTCTATTTGATCACATTTTAATGCATTCACTTGTCGAAGTATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTATTTGATCACATTTTAATGCATTCACTTGTCGAAGTATCTGT  150

seq1  TTCTTCTTTTATGCTGTGAGGATACGACTATAATACTATTGTTTACTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTTATGCTGTGAGGATACGACTATAATACTATTGTTTACTCCT  200

seq1  TTTATCACCATCCGTTAGCACAATCCCTGGAACAACAGATACTCACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACCATCCGTTAGCACAATCCCTGGAACAACAGATACTCACTGTA  250

seq1  CATCGAGTGGATGGAGGGAGTGAGCTTGCAGCCCATGTTAGGTCTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAGTGGATGGAGGGAGTGAGCTTGCAGCCCATGTTAGGTCTGAAAA  300

seq1  TGCCTGTAACTGTTCTATCATGATCTAATCTCTTGAAGAGAAATGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAACTGTTCTATCATGATCTAATCTCTTGAAGAGAAATGAGCTT  350

seq1  TTAAGCCTTCTCTTTTGTATCCTTTCCTTAAGATTCCTCCAGCTTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTTCTCTTTTGTATCCTTTCCTTAAGATTCCTCCAGCTTTATAA  400

seq1  AAACAGACCCTTCTCTTCCTTAGGAACTCATTTATTGGCCTGTTTATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACCCTTCTCTTCCTTAGGAACTCATTTATTGGCCTGTTTATTTA  450

seq1  TTTATTTATTTATTTATTTATTTATTTTATCACTGGTTTAGTATTATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTTATCACTGGTTTAGTATTATAGT  500

seq1  AATTATTATAATGAAATGCTTGAGGCCAGGCAACTTATGAAGAAGAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATAATGAAATGCTTGAGGCCAGGCAACTTATGAAGAAGAGTGT  550

seq1  TTTAGTTACTTTGTGGTTTTTGGAGGCTGAGAATCCAGACAGCATAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTACTTTGTGGTTTTTGGAGGCTGAGAATCCAGACAGCATAGTGC  600

seq1  TAGCTCTGACAGGGGCCCTCCTGGCTACACCATCTCATGGCAAGCAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGACAGGGGCCCTCCTGGCTACACCATCTCATGGCAAGCAACAT  650

seq1  TAAGGCAAAAGTGGGTAGATGGGAAGAGATCACATGGTGCAATAGGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAAAAGTGGGTAGATGGGAAGAGATCACATGGTGCAATAGGGATC  700

seq1  CAGCAACTGACTTAGGACCCCAACAGTTAGAACTGTGTTAACTCCCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACTGACTTAGGACCCCAACAGTTAGAACTGTGTTAACTCCCTCTG  750

seq1  AGGACTCATTCCGAATGGCCTATTAACCTACTAGGCTGCACATGTTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCATTCCGAATGGCCTATTAACCTACTAGGCTGCACATGTTAAAG  800

seq1  ATCCTGCTGTTTCTTAACATCACCACTTGTAGGAACAAATATCTAACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTGTTTCTTAACATCACCACTTGTAGGAACAAATATCTAACCCA  850

seq1  TGAACTCAATGGGGGACTTCCTGACCATATCCGGACCATAATAGACCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAATGGGGGACTTCCTGACCATATCCGGACCATAATAGACCTTA  900

seq1  CTAATTGAGTGAATACGGCCCAAGCCGCACTGCTGTGGCTCCTTCTGTTC  950
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  CTAATTGAGTG-ATACGGCCCAAGCCGCACTGCTGTGGCTCCTTCTG-TC  948

seq1  TTATACACCTCCTCCTTTCGAGAAACCGTTCACGGGGGCAGATCAGAGAG  1000
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  TTATACACCTCCTCCTTTCGAGAAACCG-TCACTGGGGCAGATCAGAGAG  997

seq1  CTGAGCATGGGCAGAAGGCCGAACCTTCTCCATCAGAGGCAAAGCCACCT  1050
      |||||||||||||||||  |||| ||||||||||||| |||||||   ||
seq2  CTGAGCATGGGCAGAAG--CGAA-CTTCTCCATCAGA-GCAAAGC--ACT  1041

seq1  TTGAGCCTTGTCTCTAGAGACCTCAAGTAACTCCACAC-ATTGCTTCTGT  1099
      ||||||  |||||||||||||||| |||| |||||||| |||||||||| 
seq2  TTGAGC--TGTCTCTAGAGACCTC-AGTACCTCCACACAATTGCTTCTGG  1088

seq1  GTAGCATGAAAGTGGTGACC  1119
        |||||| |||||||||||
seq2  TGAGCATGGAAGTGGTGACC  1108

seq1: chr3_130148023_130149153
seq2: B6Ng01-151F19.g_66_1175 (reverse)

seq1  TATAATACTAAAATCCCTGA-TGTGAACAACCTAAGGGAGTTGATTAGCT  49
      ||||||||| |||||||||| |||| |||| ||| |||||| || |||||
seq2  TATAATACTTAAATCCCTGAGTGTG-ACAA-CTAGGGGAGTGGA-TAGCT  47

seq1  ACTTTTCTGTTACTTTAATAAAATGATAGGAAAAAAAATAATAAAATAAA  99
      ||    ||    |||  |||||||||| |     ||||  || |   |  
seq2  AC----CTCCGCCTT--ATAAAATGATTG-----AAAAGTATGA---ATC  83

seq1  ATTACTTAGGAGACACAGTAGTGGGTGTTTGATGAAAATGTTTCTGCAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTAGGAGACACAGTAGTGGGTGTTTGATGAAAATGTTTCTGCAGA  133

seq1  AGGGAGACGCGCCCTAAATGTGGATGGCACTGTCCCATGGGCTGAGAGCC  199
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACGCG-CCTAAATGTGGATGGCACTGTCCCATGGGCTGAGAGCC  182

seq1  TAGACGGAATAGTGGTGGCACAGATAAGCACCAGTCTTCACCTCTGTGCC  249
      |||||||||||||||| |||||||| |||||||||||||||||||||| |
seq2  TAGACGGAATAGTGGT-GCACAGAT-AGCACCAGTCTTCACCTCTGTG-C  229

seq1  TTCTGACTGTGGACACAGTATGGCCTGCTAGTTCCCTTCCCAGCCATGAT  299
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCTGACTGTGGACACAGTAT-GCCTGCTAGTTCCCTTCCCAGCCATGAT  278

seq1  GAAATGGCTTCCCTCAGGTGAGACTCCTTTCTACCCTGAGTTGTATCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCTTCCCTCAGGTGAGACTCCTTTCTACCCTGAGTTGTATCTTG  328

seq1  TACAGGCATTTGGTTACAGCAAGGCAAAGGGAACTCATATACCGCCTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCATTTGGTTACAGCAAGGCAAAGGGAACTCATATACCGCCTGAG  378

seq1  TTGTGCACATCATCTCTAGGCTATAGCCAGTTCAGCGAAGTGGGTAATTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACATCATCTCTAGGCTATAGCCAGTTCAGCGAAGTGGGTAATTC  428

seq1  AGGAAGAAAACCAGGAGGAGTGGGTGATGCAGTTAAACCATGGCTCACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAACCAGGAGGAGTGGGTGATGCAGTTAAACCATGGCTCACTG  478

seq1  GGGCTAGGACCAAGTTGGGTGGATCAGATTTTAACAGATTTTAACCACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGACCAAGTTGGGTGGATCAGATTTTAACAGATTTTAACCACTG  528

seq1  TCTCTCACTGTGATTGTGATGTGGATTAATAAGATAACATGAAGAAAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTGTGATTGTGATGTGGATTAATAAGATAACATGAAGAAAATG  578

seq1  TAATGAGCCCCTGTCATGGCTGATTACTATGATTTCATATGTTATGTAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGCCCCTGTCATGGCTGATTACTATGATTTCATATGTTATGTAAG  628

seq1  GCATTCGCAGTAAAGCGCCACGGCCCTGTTAACATTGTCTAAGTGGCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGCAGTAAAGCGCCACGGCCCTGTTAACATTGTCTAAGTGGCTGG  678

seq1  AGTAAGATTCAAAGAAGTCCTCTGCTCTAGTCTGTATTGTACTACGTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATTCAAAGAAGTCCTCTGCTCTAGTCTGTATTGTACTACGTGAA  728

seq1  CAGACTTTTCACACTTTATCCACACTTAGGCATCATAAAAGCAAATAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTTCACACTTTATCCACACTTAGGCATCATAAAAGCAAATAACA  778

seq1  ATCCTATGACTAGATACTTGTGTTTTTCTCATTCTATAAACAGAAAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGACTAGATACTTGTGTTTTTCTCATTCTATAAACAGAAAAAAA  828

seq1  GCAAGACTTAGAAACAAATATTTTTGCCCAGGGTAACAGTGGCAGAACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACTTAGAAACAAATATTTTTGCCCAGGGTAACAGTGGCAGAACCA  878

seq1  CGGTGTGAACTCAGGTACTTACAGGCTGTAATTTATACATTCTCTCGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGAACTCAGGTACTTACAGGCTGTAATTTATACATTCTCTCGCTT  928

seq1  ACCCTGAGAAGCAGCTCTCTGAGTGAATAACAACATTATAAAGATGACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGAAGCAGCTCTCTGAGTGAATAACAACATTATAAAGATGACCA  978

seq1  TTGGTTCCAAGTATTTCATACAAATCTACCAAAAGACAATGCCTGCACCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCAAGTATTTCATACAAATCTACCAAAAGACAATGCCTGCACCC  1028

seq1  AAACTCAAATAGATGTACCTGTTCTTTCTCTGTGCCCTATGTGCATGCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAATAGATGTACCTGTTCTTTCTCTGTGCCCTATGTGCATGCAT  1078

seq1  GTGCACACGCACACATCAGGCCGTAAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  GTGCACACGCACACATCAGGCCGTAAGAATTC  1110