BAC Information

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BAC

Clone NameB6Ng01-151G13
Chromosome3 (Build37)
Map Location 72,551,079 - 72,662,317
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151G13.bB6Ng01-151G13.g
ACCDH947233DH947234
length1,1461,150
definitionDH947233|Mus musculus domesticus DNA, BAC clone: B6Ng01-151G13, 5' end.DH947234|Mus musculus domesticus DNA, BAC clone: B6Ng01-151G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,661,161 - 72,662,317)(72,551,079 - 72,552,225)
sequence
gaattcaaaaaccttggtcaataaaatgttacatgcacattataagagat
ctaatttgatgtataatatcagttgtgttagcctgtgtttactttcctca
attagcttgtcttcttagagactataggacctagagaggcaactgctgga
accctgtactgttgacccataggaatccatatatatatcctctgagacaa
gtatgggaatggacacttccatcccatctgttccaaaagttctcctttct
gtctcctagaatgcctaagccacctgcatctgtgtacacagtctccatcc
tcacaaagagacctctttatttcactgtcctcttaaaggaggatgtgttt
ctggagcattgtctctcttctttccatgctgcctccatcaatccttacct
aacaggaagtatatctgtttgcctcaaaatgcttctcctgatagttgcct
tgatgaatatttgtagcctacattgatagtgctcaataatggacaaaagg
gtcccatagatatctgtttctattcctagagctgcaggatcctttctctt
tacatctcattgcacatttttttgtggggcacaggagtaatgtctttgtt
cctatatatgtaactcttccaacagttagtgtatttttacctcagtgcaa
acagaggtaaaacttttaacaaagttatccttttccaggtcactgataaa
tgaaaacatacccagcatttacctcacgaaaggaagagggacacagcatt
ttgactacattttagacatacactaatacatataaacacagtacacacag
cacacatatacatataagcacagtacacacgcagcacacgcacacacaca
cactcacacagacacacacacacacagttgcaaatatatatggatgatgc
gagtctgagaaaagcacagaggtagagttgagggtaaattgagaacagga
caaccatcaaaagacagctctctccttacaccctgagttccagaattgaa
caggtcaacaagtctgtgggtataaagagaattcctgacatgaaatgtgt
tgctaaaacttcagagaatgaagagttaaggtgttgtgatagcttctcag
aatttccatggggctatttgtagcctcaaagagccattatttgttt
gaattcatgcaggtgtagttaatgaggcccagaaacttagactagataag
tcatgggtggagaggaaactttttactatttttctgttaaatgaacataa
caataaaatgagccctaaagacaaattgctttgcacatagaccagtgcat
cattcagctttcattagaaaagcatctttctgcaggagatgataatgaag
gcagagacacaaagtagacactatctactgtgagagatggtggaacactc
agccctaaacaggatgtcttcattatactcttcccttcaaggactgagaa
tctgttaaaaagagagtaagtaaagatctcaagaaaagagcattttaaac
acacaacacaactgaggtatgtatgaactcccagaaactgtgacaatatg
cacaaaaccaaattctaaatttttaatgaattgctaacaagaacaagttt
acacgaccatatgatagtggtctgccataaactatgctttggaaattggt
ataaacaatattttcagcatgttaaagaagatagtgttctgattgaataa
gtgaaagaatcccagtgctatagacaggctgatggctcagtgggaaaatg
ttttccatgtaggcttggagaagtgtgtttgaaaccctgaaaccatgtta
acctggacacaatgtaaagtgtttgtaatcccagtgcaccaatgaaaaat
tgagtgtggaaatgagagagatccagaaaatccctggcaatatattttgg
catatgtagcaatgaaacatcaacaaaatagatcctgttttaggaacatg
cctgccatgactcacacacatcaattctacctagacacacacacacacac
acacacacactcacagagggaaatagagacagagacagagagacagagaa
tctcgttggtggaccccaatggccatgatggcctgaagaagcacgtaagg
ccatcttcactatcctttctgcctactgtgaaattcctcagtcccctacc
aatccctgtataagccacttgcagggacttcatcaccctctgccttcctt
caccaagaagacaccactgacccatgaagcctttaatcctttctgtggaa
actggcctgcccaccctttctaatatcattcctttgcctgtgacactccc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72661161_72662317
seq2: B6Ng01-151G13.b_43_1188 (reverse)

seq1  AAACAAATAATGGCTCTTTTGAGGGCTACAAATAGCCCCATGGAAATTCT  50
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  AAACAAATAATGGCTC-TTTGA-GGCTACAAATAGCCCCATGGAAATTCT  48

seq1  GAGAAAGCTATCAACAACAACTTTAACTCTCCAATCTCTGAAGGTTTTAG  100
      ||| |||||||| ||||| || |||||||| || |||||||| |||||||
seq2  GAG-AAGCTATC-ACAAC-ACCTTAACTCTTCATTCTCTGAA-GTTTTAG  94

seq1  CAACCACCATTTTCATGTCAGGAATTCTCCTTTATACCCACAGACTTGTT  150
      ||| |||   |||||||||||||||||| |||||||||||||||||||||
seq2  CAA-CAC--ATTTCATGTCAGGAATTCT-CTTTATACCCACAGACTTGTT  140

seq1  GACCTGTTCAATTCTGGAACTCAGGGTGTAAGGAGAGAGCTGTCTTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTTCAATTCTGGAACTCAGGGTGTAAGGAGAGAGCTGTCTTTTGA  190

seq1  TGGTTGTCCTGTTCTTCAATTTACCCTCAACTCTACCTCTGTGCTTTTCT  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCCTGTTC-TCAATTTACCCTCAACTCTACCTCTGTGCTTTTCT  239

seq1  CAGACTCGCATCATCCATATATATTTGCAACTGTGTGTGTGTGTGTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCGCATCATCCATATATATTTGCAACTGTGTGTGTGTGTGTCTGT  289

seq1  GTGAGTGTGTGTGTGTGCGTGTGCTGCGTGTGTACTGTGCTTATATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGTGTGTGTGCGTGTGCTGCGTGTGTACTGTGCTTATATGTAT  339

seq1  ATGTGTGCTGTGTGTACTGTGTTTATATGTATTAGTGTATGTCTAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCTGTGTGTACTGTGTTTATATGTATTAGTGTATGTCTAAAATG  389

seq1  TAGTCAAAATGCTGTGTCCCTCTTCCTTTCGTGAGGTAAATGCTGGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAAATGCTGTGTCCCTCTTCCTTTCGTGAGGTAAATGCTGGGTAT  439

seq1  GTTTTCATTTATCAGTGACCTGGAAAAGGATAACTTTGTTAAAAGTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATTTATCAGTGACCTGGAAAAGGATAACTTTGTTAAAAGTTTTA  489

seq1  CCTCTGTTTGCACTGAGGTAAAAATACACTAACTGTTGGAAGAGTTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTGCACTGAGGTAAAAATACACTAACTGTTGGAAGAGTTACAT  539

seq1  ATATAGGAACAAAGACATTACTCCTGTGCCCCACAAAAAAATGTGCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGAACAAAGACATTACTCCTGTGCCCCACAAAAAAATGTGCAATG  589

seq1  AGATGTAAAGAGAAAGGATCCTGCAGCTCTAGGAATAGAAACAGATATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAAGAGAAAGGATCCTGCAGCTCTAGGAATAGAAACAGATATCT  639

seq1  ATGGGACCCTTTTGTCCATTATTGAGCACTATCAATGTAGGCTACAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCCTTTTGTCCATTATTGAGCACTATCAATGTAGGCTACAAATA  689

seq1  TTCATCAAGGCAACTATCAGGAGAAGCATTTTGAGGCAAACAGATATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAGGCAACTATCAGGAGAAGCATTTTGAGGCAAACAGATATACT  739

seq1  TCCTGTTAGGTAAGGATTGATGGAGGCAGCATGGAAAGAAGAGAGACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTAGGTAAGGATTGATGGAGGCAGCATGGAAAGAAGAGAGACAAT  789

seq1  GCTCCAGAAACACATCCTCCTTTAAGAGGACAGTGAAATAAAGAGGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAAACACATCCTCCTTTAAGAGGACAGTGAAATAAAGAGGTCTC  839

seq1  TTTGTGAGGATGGAGACTGTGTACACAGATGCAGGTGGCTTAGGCATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGGATGGAGACTGTGTACACAGATGCAGGTGGCTTAGGCATTCT  889

seq1  AGGAGACAGAAAGGAGAACTTTTGGAACAGATGGGATGGAAGTGTCCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAGAAAGGAGAACTTTTGGAACAGATGGGATGGAAGTGTCCATT  939

seq1  CCCATACTTGTCTCAGAGGATATATATATGGATTCCTATGGGTCAACAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACTTGTCTCAGAGGATATATATATGGATTCCTATGGGTCAACAGT  989

seq1  ACAGGGTTCCAGCAGTTGCCTCTCTAGGTCCTATAGTCTCTAAGAAGACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTCCAGCAGTTGCCTCTCTAGGTCCTATAGTCTCTAAGAAGACA  1039

seq1  AGCTAATTGAGGAAAGTAAACACAGGCTAACACAACTGATATTATACATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTGAGGAAAGTAAACACAGGCTAACACAACTGATATTATACATC  1089

seq1  AAATTAGATCTCTTATAATGTGCATGTAACATTTTATTGACCAAGGTTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGATCTCTTATAATGTGCATGTAACATTTTATTGACCAAGGTTTT  1139

seq1  TGAATTC  1157
      |||||||
seq2  TGAATTC  1146

seq1: chr3_72551079_72552225
seq2: B6Ng01-151G13.g_68_1217

seq1  GAATTCATGCAGGTGTAGTTAATGAGGCCCAGAAACTTAGACTAGATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAGGTGTAGTTAATGAGGCCCAGAAACTTAGACTAGATAAG  50

seq1  TCATGGGTGGAGAGGAAACTTTTTACTATTTTTCTGTTAAATGAACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTGGAGAGGAAACTTTTTACTATTTTTCTGTTAAATGAACATAA  100

seq1  CAATAAAATGAGCCCTAAAGACAAATTGCTTTGCACATAGACCAGTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATGAGCCCTAAAGACAAATTGCTTTGCACATAGACCAGTGCAT  150

seq1  CATTCAGCTTTCATTAGAAAAGCATCTTTCTGCAGGAGATGATAATGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGCTTTCATTAGAAAAGCATCTTTCTGCAGGAGATGATAATGAAG  200

seq1  GCAGAGACACAAAGTAGACACTATCTACTGTGAGAGATGGTGGAACACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACACAAAGTAGACACTATCTACTGTGAGAGATGGTGGAACACTC  250

seq1  AGCCCTAAACAGGATGTCTTCATTATACTCTTCCCTTCAAGGACTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAAACAGGATGTCTTCATTATACTCTTCCCTTCAAGGACTGAGAA  300

seq1  TCTGTTAAAAAGAGAGTAAGTAAAGATCTCAAGAAAAGAGCATTTTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAAAAAGAGAGTAAGTAAAGATCTCAAGAAAAGAGCATTTTAAAC  350

seq1  ACACAACACAACTGAGGTATGTATGAACTCCCAGAAACTGTGACAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACACAACTGAGGTATGTATGAACTCCCAGAAACTGTGACAATATG  400

seq1  CACAAAACCAAATTCTAAATTTTTAATGAATTGCTAACAAGAACAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACCAAATTCTAAATTTTTAATGAATTGCTAACAAGAACAAGTTT  450

seq1  ACACGACCATATGATAGTGGTCTGCCATAAACTATGCTTTGGAAATTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACCATATGATAGTGGTCTGCCATAAACTATGCTTTGGAAATTGGT  500

seq1  ATAAACAATATTTTCAGCATGTTAAAGAAGATAGTGTTCTGATTGAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAATATTTTCAGCATGTTAAAGAAGATAGTGTTCTGATTGAATAA  550

seq1  GTGAAAGAATCCCAGTGCTATAGACAGGCTGATGGCTCAGTGGGAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGAATCCCAGTGCTATAGACAGGCTGATGGCTCAGTGGGAAAATG  600

seq1  TTTTCCATGTAGGCTTGGAGAAGTGTGTTTGAAACCCTGAAACCATGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATGTAGGCTTGGAGAAGTGTGTTTGAAACCCTGAAACCATGTTA  650

seq1  ACCTGGACACAATGTAAAGTGTTTGTAATCCCAGTGCACCAATGAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGACACAATGTAAAGTGTTTGTAATCCCAGTGCACCAATGAAAAAT  700

seq1  TGAGTGTGGAAATGAGAGAGATCCAGAAAATCCCTGGCAATATATTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGGAAATGAGAGAGATCCAGAAAATCCCTGGCAATATATTTTGG  750

seq1  CATATGTAGCAATGAAACATCAACAAAATAGATCCTGTTTTAGGAACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAGCAATGAAACATCAACAAAATAGATCCTGTTTTAGGAACATG  800

seq1  CCTGCCATGACTCACACACATCAATTCTACCTAGACACACACACACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATGACTCACACACATCAATTCTACCTAGACACACACACACACAC  850

seq1  ACACACACACTCACAGAGGGAAATAGAGACAGAGACAGAGAGACAGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTCACAGAGGGAAATAGAGACAGAGACAGAGAGACAGAGAA  900

seq1  TCTCGTTGGTGGACCCCAATGGCCATGATGGCCTG-AGAAGCACGT-AGG  948
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TCTCGTTGGTGGACCCCAATGGCCATGATGGCCTGAAGAAGCACGTAAGG  950

seq1  CCATCTTCACTATCCTTTCTGCCTTACTGTGAAATTCCTCAGTCCCCTAC  998
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCATCTTCACTATCCTTTCTGCC-TACTGTGAAATTCCTCAGTCCCCTAC  999

seq1  CAATCCCTGTATAAGGCCACTTGCAGGGACTTCATCACCCTCTGCCTTCC  1048
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAATCCCTGTATAA-GCCACTTGCAGGGACTTCATCACCCTCTGCCTTCC  1048

seq1  TTCAC--AG-AGACAACCACTGAACCATG-AGCCTTTACTCCTTCCTGTG  1094
      |||||  || |||| |||||||| ||||| |||||||| ||||| |||||
seq2  TTCACCAAGAAGAC-ACCACTGACCCATGAAGCCTTTAATCCTTTCTGTG  1097

seq1  GATACT-GTCTGCCCACCCCTTTCT-ATATCATCCCTTTTGCTTTGTGAC  1142
      || ||| | ||||||| |||||||| ||||||| |||||  |  ||||||
seq2  GAAACTGGCCTGCCCA-CCCTTTCTAATATCATTCCTTTGCC--TGTGAC  1144

seq1  A-TCCC  1147
      | ||||
seq2  ACTCCC  1150