BAC Information

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BAC

Clone NameB6Ng01-151H05
Chromosome3 (Build37)
Map Location 157,272,776 - 157,309,583
singlet/doubletdoublet
Overlap genePtger3
Upstream geneNegr1, LOC100041152, LOC668853, LOC546818, Zranb2
Downstream geneLOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151H05.bB6Ng01-151H05.g
ACCDH947265DH947266
length4841,181
definitionDH947265|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H05, 5' end.DH947266|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,272,776 - 157,273,265)(157,308,385 - 157,309,583)
sequence
cacatctaatgtccccctttaattgtgaagctttagattctggtgtgaaa
tgctttagatttaaagtatgttcatcttttaaagtaagcaggtcttggga
cagtgtgccacaagtcaccaagattgagcagtcatttgaaaatagtttcc
agattctggaaaaaaatcaatgtttattgagaagctacgggaggtctgtg
taatttgagattcttagtgctttagaaaggacaactatgtatgtttgcat
tggatgaggtggagattatggtagagaagccttgtccactgcaacatgct
aaaaaccctggtcctttaaggcagaactcagaagcagaggcagggagggg
cttcatttaactggagatactacttaccaggaagacaaagagttcgaccc
tgggctcatcttcaaaagagaaatggtaaatgtattcactcagagagaga
gagagagagagagagagagagaggggggggggga
gaattcactacatatatgtgaaaaagagtaagaatgcatgtctacacacc
cacttagcacattaatgttgcacagtttggtgtgtttaactctaagcttt
atggttggtcttacaattggtttaaacctactgatcaatcccaccagggc
agcaactcagtggaacttgttttatttggaggatcagcccttattgtaac
cttattacataaggatgagagtgtttactgtcaatgccgacggtgacggc
cttaaaaattaatccacatgtcactgagtcacagcacaagtgcactttat
cggaagtcagcatttcaggtgaatccagtcagcagtaggtgatttctctg
aactaaaagtcaaagtatcctttgaactccattcacttttgctgaaaacc
taaaattgcactcaaaaatgaaaacctgtttttaaaaacagcaccataag
cattttacacagaaacatgctttctatcatcagagttcagatgaatcaca
agagggccagtctggtgtctgagaatcacctttgtcaagtgtttccagtt
attgcaatattattgcttttgcaaaagtaggtttacattattatgttgaa
ctagtttgcttggatacagatgcattcaaatcagaaagttaacatgaaac
ttcctcaactgatatagaagcaacttcccaccaaattccttcctattata
aactgggagtcctgtatataaatgtcacacctgctgataatttactagtg
aatagtaacttctagatgtcacacatgacaacatggcactaggagattgg
taaggaaaatataagaaaaacgggctctagacgttgtttttcaggggaaa
atgacagccagtgaaaatgattaaggacagtgtggtgtaatactgtgagc
tccacataatgtaggtatggagatacaggcaaggatacccagagtgtgaa
ttgtctgaggcctagacaagtgagacagtgggagtctgagttctgcagag
gtaaatgatggcgaggtcttaagatagaataaatgagttaaaaggtggtt
ctgccatgaccctcatcccatgtggaaggaatcagtcttgaggttgactg
aagcttgtattcgagtacttggaattattctaaccaaacatcatgcctta
actgcgtctgtaccgtgccagtacacttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157272776_157273265
seq2: B6Ng01-151H05.b_45_534

seq1  GAATTCCACATCTAATGTCCCCCTTTAATTGTGAAGCTTTAGATTCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATCTAATGTCCCCCTTTAATTGTGAAGCTTTAGATTCTGGT  50

seq1  GTGAAATGCTTTAGATTTAAAGTATGTTCATCTTTTAAAGTAAGCAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGCTTTAGATTTAAAGTATGTTCATCTTTTAAAGTAAGCAGGTC  100

seq1  TTGGGACAGTGTGCCACAAGTCACCAAGATTGAGCAGTCATTTGAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACAGTGTGCCACAAGTCACCAAGATTGAGCAGTCATTTGAAAATA  150

seq1  GTTTCCAGATTCTGGAAAAAAATCAATGTTTATTGAGAAGCTACGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGATTCTGGAAAAAAATCAATGTTTATTGAGAAGCTACGGGAGG  200

seq1  TCTGTGTAATTTGAGATTCTTAGTGCTTTAGAAAGGACAACTATGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAATTTGAGATTCTTAGTGCTTTAGAAAGGACAACTATGTATGT  250

seq1  TTGCATTGGATGAGGTGGAGATTATGGTAGAGAAGCCTTGTCCACTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTGGATGAGGTGGAGATTATGGTAGAGAAGCCTTGTCCACTGCAA  300

seq1  CATGCTAAAAACCCTGGTCCTTTAAGGCAGAACTCAGAAGCAGAGGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAAAAACCCTGGTCCTTTAAGGCAGAACTCAGAAGCAGAGGCAGG  350

seq1  GAGGGGCTTCATTTAACTGGAGATACTACTTACCAGGAAGACAAAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTTCATTTAACTGGAGATACTACTTACCAGGAAGACAAAGAGTT  400

seq1  CGACCCTGGGCTCATCTTCAAAAGAGAAATGGTAAATGTATTCACTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCTGGGCTCATCTTCAAAAGAGAAATGGTAAATGTATTCACTCAGA  450

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGA  490
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGA  490

seq1: chr3_157308385_157309583
seq2: B6Ng01-151H05.g_69_1249 (reverse)

seq1  AGGAAGTGTA--TGCAACGTACTAGACGCCAGTT-AGGCATGAAAGTTTT  47
      ||||||||||   |||  |||| ||||| ||||| ||||||||   | ||
seq2  AGGAAGTGTACTGGCACGGTAC-AGACG-CAGTTAAGGCATGA---TGTT  45

seq1  TGTTTAGGATTATTTCAAAGTACTCG-ATACAAGCTTTCAGTTCAACTTC  96
      || ||| || || ||| ||||||||| |||||||| ||||| ||||| ||
seq2  TGGTTA-GAATAATTCCAAGTACTCGAATACAAGC-TTCAG-TCAACCTC  92

seq1  -AGACTGATTTCCTTTCCACATGGGGTTGAGTGTCATGGGCAGAACCCAC  145
       |||||||||  | |||||||| ||| |||| ||||| |||||||||  |
seq2  AAGACTGATT--CCTTCCACAT-GGGATGAGGGTCAT-GGCAGAACCACC  138

seq1  TTCTAACTCATTTATTCTTATCTGTAAGACCTCGCCATCATTTTACCTCT  195
      || |||||||||||||| ||||| |||||||||||||||| |||||||||
seq2  TTTTAACTCATTTATTC-TATCT-TAAGACCTCGCCATCA-TTTACCTCT  185

seq1  GCAGAACTTCAGACTTCCCACCTGTTCTCACCTTGTCTTAGGCCTCAGAC  245
      ||||||| |||||| ||||| ||| ||||| |||||| ||||||||||||
seq2  GCAGAAC-TCAGAC-TCCCA-CTG-TCTCA-CTTGTC-TAGGCCTCAGAC  229

seq1  AATTCACACCTCTGTGTATCCTTGCCTGTATCTCCATACCTACATTATGT  295
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  AATTCACA-CTCTGGGTATCCTTGCCTGTATCTCCATACCTACATTATGT  278

seq1  GGAGCTCACAGTATTACACCACACTGTTCCTTAATCATTTTCACTGGCTG  345
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAGCTCACAGTATTACACCACACTG-TCCTTAATCATTTTCACTGGCTG  327

seq1  TCATTTTCCCCTGAAAAACAACGTCTAGAGCCCGTTTTTCTTATATTTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCCCCTGAAAAACAACGTCTAGAGCCCGTTTTTCTTATATTTTC  377

seq1  CTTACCAATCTCCTAGTGCCATGTTGTCATGTGTGACATCTAGAAGTTAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAATCTCCTAGTGCCATGTTGTCATGTGTGACATCTAGAAGTTAC  427

seq1  TATTCACTAGTAAATTATCAGCAGGTGTGACATTTATATACAGGACTCCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTAGTAAATTATCAGCAGGTGTGACATTTATATACAGGACTCCC  477

seq1  AGTTTATAATAGGAAGGAATTTGGTGGGAAGTTGCTTCTATATCAGTTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAATAGGAAGGAATTTGGTGGGAAGTTGCTTCTATATCAGTTGA  527

seq1  GGAAGTTTCATGTTAACTTTCTGATTTGAATGCATCTGTATCCAAGCAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTCATGTTAACTTTCTGATTTGAATGCATCTGTATCCAAGCAAA  577

seq1  CTAGTTCAACATAATAATGTAAACCTACTTTTGCAAAAGCAATAATATTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCAACATAATAATGTAAACCTACTTTTGCAAAAGCAATAATATTG  627

seq1  CAATAACTGGAAACACTTGACAAAGGTGATTCTCAGACACCAGACTGGCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTGGAAACACTTGACAAAGGTGATTCTCAGACACCAGACTGGCC  677

seq1  CTCTTGTGATTCATCTGAACTCTGATGATAGAAAGCATGTTTCTGTGTAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGATTCATCTGAACTCTGATGATAGAAAGCATGTTTCTGTGTAA  727

seq1  AATGCTTATGGTGCTGTTTTTAAAAACAGGTTTTCATTTTTGAGTGCAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTATGGTGCTGTTTTTAAAAACAGGTTTTCATTTTTGAGTGCAAT  777

seq1  TTTAGGTTTTCAGCAAAAGTGAATGGAGTTCAAAGGATACTTTGACTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTTCAGCAAAAGTGAATGGAGTTCAAAGGATACTTTGACTTTT  827

seq1  AGTTCAGAGAAATCACCTACTGCTGACTGGATTCACCTGAAATGCTGACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAGAAATCACCTACTGCTGACTGGATTCACCTGAAATGCTGACT  877

seq1  TCCGATAAAGTGCACTTGTGCTGTGACTCAGTGACATGTGGATTAATTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATAAAGTGCACTTGTGCTGTGACTCAGTGACATGTGGATTAATTTT  927

seq1  TAAGGCCGTCACCGTCGGCATTGACAGTAAACACTCTCATCCTTATGTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCGTCACCGTCGGCATTGACAGTAAACACTCTCATCCTTATGTAA  977

seq1  TAAGGTTACAATAAGGGCTGATCCTCCAAATAAAACAAGTTCCACTGAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTACAATAAGGGCTGATCCTCCAAATAAAACAAGTTCCACTGAGT  1027

seq1  TGCTGCCCTGGTGGGATTGATCAGTAGGTTTAAACCAATTGTAAGACCAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCTGGTGGGATTGATCAGTAGGTTTAAACCAATTGTAAGACCAA  1077

seq1  CCATAAAGCTTAGAGTTAAACACACCAAACTGTGCAACATTAATGTGCTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGCTTAGAGTTAAACACACCAAACTGTGCAACATTAATGTGCTA  1127

seq1  AGTGGGTGTGTAGACATGCATTCTTACTCTTTTTCACATATATGTAGTGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGTGTAGACATGCATTCTTACTCTTTTTCACATATATGTAGTGA  1177

seq1  ATTC  1199
      ||||
seq2  ATTC  1181