BAC Information

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BAC

Clone NameB6Ng01-151K10
Chromosome17 (Build37)3 (Build37)
Map Location 18,463,342 - 18,464,59041,058,846 - 41,059,406
singlet/doubletsingletsinglet
Overlap geneEG627132
Upstream geneLOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227
Downstream geneLOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151K10.bB6Ng01-151K10.g
ACCDH947418DH947419
length1,240886
definitionDH947418|Mus musculus domesticus DNA, BAC clone: B6Ng01-151K10, 5' end.DH947419|Mus musculus domesticus DNA, BAC clone: B6Ng01-151K10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,463,342 - 18,464,590)(41,058,846 - 41,059,406)
sequence
gaattcatttaatcatatcaggagaaaacaacatacaagaaggaagaatt
ctcctaaaatatagttgaaaaaatatattaacttttattttaacaacatc
atgtaaggtgtcattcatatatcattctaaaatatgttatacaatgatag
tatgaatgtaattttatcaggttttgttcctttactcaactatattaaag
tgtatactatgaaatccacttatgttccatgtttgatcactacatttgct
ctggtgattcagcttctctgagtctaagacctgatgactccactcctggt
tcatatcagtggtttgtatcctttattgatataaacttttccatttcatt
tatttttttaacttcatgaatagtctttcttccacctgaaataggaaaat
atttagtttggaaattccattggaatataatttttaatgtccattaatta
gtcacacttaaaacttaattgtcatataagtagtgtgtaaatttttaaca
tgtttaattatcagtataccatgtttgaaaatgaacagcattgtatatgt
taagctctcaaggcatctaattaatttataatgttatgtttgtatttata
tgtatatattgaaaaccaggaggtgtcatattttaaatttaatcttttat
agtgtaatagtatctgattcatgactttgtgtttttaatactaactcagt
gtgaaggctcatttaaaaatgtatgttataacccaaagttaaatatgagt
caatcagatcaataaatgtagagtcaatattcatagattgactaagtttg
tgacatgtccagctgtttaaaagttagctgattaccattgcatacattta
aagttagaaatttacacatattatatttagtatttagctttctggtgcat
caactcatctgagaatttctggtgtcacaacttgttcatatagaattttt
gtatatgctttaatacaaattctatttttattcatttaacttgctctcac
ctaatttttgtataaactggtataccatcctcaatcaaaataaaaatcat
ttataggcctcattccttccaaaattcataattatttgtaaaaataaata
gaacaatgtacttaaaatatccttttcccattccaatgtgtatatggaaa
aaaaacgatatcattgtttgaacataagcgtattactttcctagcatgct
atccttgcctctatacacgagttctggggctatactctct
gaattctttgtttagctctgagccccattttttaatgggcttatttaatt
ttctggagtccaccttcttgagttctttatatatattggatattagtctc
ctatctgatttaggagaggtaaagatattttcccagtctgttggtggtct
tattatcttattgatgctgtcttttgccttacagaagctttgcaatttta
tgagatcccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctattcaggaatttttctcctgtgcccatatattcgaggcttttccccac
tttcttctctataagtttctctgtctctggttttatgtggagttcgttga
tccacttagatttgaccttagcacaaggagaagggaatggatcaattcct
attcttttacacgataaccacaagttgtgctagcaagttgttgaaaatgc
tgtcatttagctcctttgtcaaagatcaagtaaccataggtgtgtgggtt
tatttctgggttttcaattcaattccattggtctatttgtctgttgctat
accagtaccatgcagtttttatcacaattgctatttgtacagctttaggt
caggcatagtaattccaccagaggttcttttatccttgagaagagttttt
gctatcctagttttttttttttttttttttttgttattccagatgaattt
gcagattgctctttctaatttcattgaagattgagttgggattttgatgg
ggattgcattgaatctgtagattgcttttggcagatagccatttttacta
tattgatcctgccacccatgagcatgggagatctttccatctgctgagat
ctcctttaattttttcttcagagacttgaagttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_18463342_18464590
seq2: B6Ng01-151K10.b_46_1285

seq1  GAATTCATTTAATCATATCAGGAGAAAACAACATACAAGAAGGAAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAATCATATCAGGAGAAAACAACATACAAGAAGGAAGAATT  50

seq1  CTCCTAAAATATAGTTGAAAAAATATATTAACTTTTATTTTAACAACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAATATAGTTGAAAAAATATATTAACTTTTATTTTAACAACATC  100

seq1  ATGTAAGGTGTCATTCATATATCATTCTAAAATATGTTATACAATGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGGTGTCATTCATATATCATTCTAAAATATGTTATACAATGATAG  150

seq1  TATGAATGTAATTTTATCAGGTTTTGTTCCTTTACTCAACTATATTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGTAATTTTATCAGGTTTTGTTCCTTTACTCAACTATATTAAAG  200

seq1  TGTATACTATGAAATCCACTTATGTTCCATGTTTGATCACTACATTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTATGAAATCCACTTATGTTCCATGTTTGATCACTACATTTGCT  250

seq1  CTGGTGATTCAGCTTCTCTGAGTCTAAGACCTGATGACTCCACTCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATTCAGCTTCTCTGAGTCTAAGACCTGATGACTCCACTCCTGGT  300

seq1  TCATATCAGTGGTTTGTATCCTTTATTGATATAAACTTTTCCATTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCAGTGGTTTGTATCCTTTATTGATATAAACTTTTCCATTTCATT  350

seq1  TATTTTTTTAACTTCATGAATAGTCTTTCTTCCACCTGAAATAGGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAACTTCATGAATAGTCTTTCTTCCACCTGAAATAGGAAAAT  400

seq1  ATTTAGTTTGGAAATTCCATTGGAATATAATTTTTAATGTCCATTAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTGGAAATTCCATTGGAATATAATTTTTAATGTCCATTAATTA  450

seq1  GTCACACTTAAAACTTAATTGTCATATAAGTAGTGTGTAAATTTTTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTTAAAACTTAATTGTCATATAAGTAGTGTGTAAATTTTTAACA  500

seq1  TGTTTAATTATCAGTATACCATGTTTGAAAATGAACAGCATTGTATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATTATCAGTATACCATGTTTGAAAATGAACAGCATTGTATATGT  550

seq1  TAAGCTCTCAAGGCATCTAATTAATTTATAATGTTATGTTTGTATTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTCAAGGCATCTAATTAATTTATAATGTTATGTTTGTATTTATA  600

seq1  TGTATATATTGAAAACCAGGAGGTGTCATATTTTAAATTTAATCTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATTGAAAACCAGGAGGTGTCATATTTTAAATTTAATCTTTTAT  650

seq1  AGTGTAATAGTATCTGATTCATGACTTTGTGTTTTTAATACTAACTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATAGTATCTGATTCATGACTTTGTGTTTTTAATACTAACTCAGT  700

seq1  GTGAAGGCTCATTTAAAAATGTATGTTATAACCCAAAGTTAAATATGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCTCATTTAAAAATGTATGTTATAACCCAAAGTTAAATATGAGT  750

seq1  CAATCAGATCAATAAATGTAGAGTCAATATTCATAGATTGACTAAGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGATCAATAAATGTAGAGTCAATATTCATAGATTGACTAAGTTTG  800

seq1  TGACATGTCCAGCTGTTTAAAAGTTAGCTGATTACCATTGCATACATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTCCAGCTGTTTAAAAGTTAGCTGATTACCATTGCATACATTTA  850

seq1  AAGTTAGAAATTTACACATATTATATTTAGTATTTAGCTTTCTGGTGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAAATTTACACATATTATATTTAGTATTTAGCTTTCTGGTGCAT  900

seq1  CAACTCATCTGAGAATTTCTGGTGTCACAACTTGTTCATATAGAATTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATCTGAGAATTTCTGGTGTCACAACTTGTTCATATAGAATTTTT  950

seq1  GTATAATGCTTTAATACAAATTCTTATTTTTATTCATTTAACTTGCTCTC  1000
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTAT-ATGCTTTAATACAAATTC-TATTTTTATTCATTTAACTTGCTCTC  998

seq1  ACCTAATTTTTGTATAAACTGGTATACCATCCTCAATCAAAATAAAAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCTAATTTTTGTATAAACTGGTATACCATCCTCAATCAAAAT-AAAAAT  1047

seq1  CATTTATAGG-CTCATTCC-TCCAAAATTCATTATTATTTTGTAAAAAT-  1097
      |||||||||| |||||||| |||||||||||| |||| ||||||||||| 
seq2  CATTTATAGGCCTCATTCCTTCCAAAATTCATAATTA-TTTGTAAAAATA  1096

seq1  AATAG-ACATTGTACTTAAAATAATCTTTTTTCAATCCCATTGT-TATAT  1145
      ||||| ||| |||||||||||| ||| |||| | || ||| ||| |||||
seq2  AATAGAACAATGTACTTAAAAT-ATCCTTTTCCCATTCCAATGTGTATAT  1145

seq1  GAAAAAAAAACAAATATAAAAATTGTTAGAACAATAGCGTATTACTTTTC  1195
      | |||||||||  ||||    |||||| |||||  ||||||||||||   
seq2  GGAAAAAAAAC-GATAT---CATTGTTTGAACATAAGCGTATTACTT---  1188

seq1  TCTTAGTCATGGTCTAT-CTTTCCTCTTATCACTGATTTCT-TGGCTATA  1243
      || ||| ||||  |||| ||| |||||   ||| || ||||  |||||||
seq2  TCCTAG-CATG--CTATCCTTGCCTCTATACAC-GAGTTCTGGGGCTATA  1234

seq1  CTCTCT  1249
      ||||||
seq2  CTCTCT  1240

seq1: chr3_41058846_41059406
seq2: B6Ng01-151K10.g_402_954 (reverse)

seq1  AAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATG  50
      |||||||||||||||||||||||| ||||||||| ||||||||| |||||
seq2  AAGAACTTCAAGTCTCTGAAGAAA-AAATTAAAGGAGATCTCAGCAGATG  49

seq1  GAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGG  100
      ||||||||||||||||||||||  |||||||||||| || ||||||||||
seq2  GAAAGATCTCCCATGCTCATGG-GTGGCAGGATCAATATAGTAAAAATGG  98

seq1  CTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTATC-TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATC  147

seq1  CCAACTCAATTCTTCAACG-AATTTGAAAGAGCAATCTGCAAATTCATCT  199
      ||||||||| ||||||| | |||| |||||||||||||||||||||||||
seq2  CCAACTCAA-TCTTCAATGAAATTAGAAAGAGCAATCTGCAAATTCATCT  196

seq1  GGAATAAC---------------AAAAAACCTAGGATAGCAAAAACTCTT  234
      ||||||||               |||||| ||||||||||||||||||||
seq2  GGAATAACAAAAAAAAAAAAAAAAAAAAAACTAGGATAGCAAAAACTCTT  246

seq1  CTCAAGGATAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCT  284
      ||||||||||| ||||||||||||||||| || |||||||||||||||||
seq2  CTCAAGGATAAAAGAACCTCTGGTGGAATTACTATGCCTGACCTAAAGCT  296

seq1  TTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACA  334
       ||| | | ||||||||||||||||||||||||||||||||||||  |||
seq2  GTAC-AAATAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGCAACA  345

seq1  GACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACAC  384
      |||||  ||||||||||||| |||||||| || ||||||  || ||||||
seq2  GACAAATAGACCAATGGAATTGAATTGAAAACCCAGAAATAAACCCACAC  395

seq1  ACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAA  434
      ||||||||| |||||||||| ||||| ||||||                 
seq2  ACCTATGGTTACTTGATCTTTGACAAAGGAGCT-----------------  428

seq1  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCAT  484
      ||| ||||||||||||||||| |  |||| |||||||| || |||||| |
seq2  AAATGACAGCATTTTCAACAACT--TGCTAGCACAACTTGTGGTTATCGT  476

seq1  GTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAA  534
      ||| ||||||  ||||||||||| |||  ||||||||| |||||||||||
seq2  GTAAAAGAATAGGAATTGATCCATTCCCTTCTCCTTGTGCTAAGGTCAAA  526

seq1  TCTAAGTGGATCAAGGAACGCCACATA  561
      |||||||||||||| |||| |||||||
seq2  TCTAAGTGGATCAACGAACTCCACATA  553