BAC Information

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BAC

Clone NameB6Ng01-151O05
ChromosomeX (Build37)3 (Build37)
Map Location 159,502,402 - 159,503,57895,529,732 - 95,530,221
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151O05.bB6Ng01-151O05.g
ACCDH947597DH947598
length1,174547
definitionDH947597|Mus musculus domesticus DNA, BAC clone: B6Ng01-151O05, 5' end.DH947598|Mus musculus domesticus DNA, BAC clone: B6Ng01-151O05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(159,502,402 - 159,503,578)(95,529,732 - 95,530,221)
sequence
gaattcattatggtatcttcttgtagctatgcttaactatagacatgaat
atttataaatgggagctccagttagagagtcaaaaggaagcaggtatcat
agtagttaaatggaataatggagcacagttccttaagggactgtattatt
ttttaattttaaagttactttaatttgtgtaagcaagtgtgtgcatgcac
aggccagaggacaacttgcaagagttcattatcttctaccattgctggtc
cagggatcaaactcaggttaccaagcatgcaagccagcttgtattcccat
tgggccatcttaccagacctaggttctgcttctgtaaagtctagtgtacc
ttgaaatgtggccatctgagggataagcctttagcacagggccctgtgga
gggcattctaaatctcaactacaggaaatactattctagacttaaacaca
caaggggaagctatggttaccagactctagagaaagctctctctctctct
ctctctctctctctctctctctcacacacacacaccttgttggctccact
ttttttttctagagaattctaatatgatggtatcttagttttaattgtta
acttgatatgacctagagcagtggttctcaactttcctaatgccgtgact
ctttgatacagttcttcacattgtggtgaccccaaccataaaatttttgg
tgctacttcataactgtaatttgacactgttgtgaatagtaatgtcacta
tctgatatgcaggagatctgatatctacaggttgagacctgctggcctag
agtcatctgagaagggagtccctgttgagagatttcccagatcagattgg
cctatgaagttattgcactgttgttaattgatgttggagggcctggtgtg
agcagtgtcattctctgggcaggcagtgcttctgaactgtatatgacagc
taagctaagcgtgagctttttgagcagaacagcaagctgacctccaatgg
tttctacttcaagttcccactgagtttctaccccgacttccctcagtggg
tgatctacagcaaacaaggatcatctagagcatatggcaaggcaatggat
ctgtaatccttcttaaagaaggctaatcaccgataatccctggtcacaga
aagaggaaagaaatgggccatagt
gaattcccagtattcatgtgcaggtcacaactgcctatataactccagct
ctagaagatcctttgggtttttttctggcctccaccaaaacaaacataca
cacacacacatggcacacatggcacacagagagaaacaagtaaagtaaaa
aaatagtttttaaaaattaaaaaggacacataaaagccaagaaatatttt
agagaaaaaatattcttaggggctgtaagcatggcttagtaaacgtgctt
gctttgcaggcatgaagacatgagttcagtctccagcacccatgcaaaaa
gccagatatagtggcatgcactggcaagcctagtgctgaggaggcaaagg
cagcaagtccatgaggaactgctgaacagccatcctagctagcctacttg
gtgagctcaatgtcagggaaagactcttgtctcagaataagatgagtgac
tgacatcaggaataacatgtgaatttgccctcaggcctgtacatgcatgt
gcacagacacacacagagagagacagagacagagagacagagacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159502402_159503578
seq2: B6Ng01-151O05.b_46_1219

seq1  GAATTCATTATGGTATCTTCTTGTAGCTATGCTTAACTATAGACATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGGTATCTTCTTGTAGCTATGCTTAACTATAGACATGAAT  50

seq1  ATTTATAAATGGGAGCTCCAGTTAGAGAGTCAAAAGGAAGCAGGTATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAATGGGAGCTCCAGTTAGAGAGTCAAAAGGAAGCAGGTATCAT  100

seq1  AGTAGTTAAATGGAATAATGGAGCACAGTTCCTTAAGGGACTGTATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTAAATGGAATAATGGAGCACAGTTCCTTAAGGGACTGTATTATT  150

seq1  TTTTAATTTTAAAGTTACTTTAATTTGTGTAAGCAAGTGTGTGCATGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTAAAGTTACTTTAATTTGTGTAAGCAAGTGTGTGCATGCAC  200

seq1  AGGCCAGAGGACAACTTGCAAGAGTTCATTATCTTCTACCATTGCTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAGGACAACTTGCAAGAGTTCATTATCTTCTACCATTGCTGGTC  250

seq1  CAGGGATCAAACTCAGGTTACCAAGCATGCAAGCCAGCTTGTATTCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATCAAACTCAGGTTACCAAGCATGCAAGCCAGCTTGTATTCCCAT  300

seq1  TGGGCCATCTTACCAGACCTAGGTTCTGCTTCTGTAAAGTCTAGTGTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATCTTACCAGACCTAGGTTCTGCTTCTGTAAAGTCTAGTGTACC  350

seq1  TTGAAATGTGGCCATCTGAGGGATAAGCCTTTAGCACAGGGCCCTGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTGGCCATCTGAGGGATAAGCCTTTAGCACAGGGCCCTGTGGA  400

seq1  GGGCATTCTAAATCTCAACTACAGGAAATACTATTCTAGACTTAAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTCTAAATCTCAACTACAGGAAATACTATTCTAGACTTAAACACA  450

seq1  CAAGGGGAAGCTATGGTTACCAGACTCTAGAGAAAGCTCTCTCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAAGCTATGGTTACCAGACTCTAGAGAAAGCTCTCTCTCTCTCT  500

seq1  CTCTCTCTCTCTCTCTCTCTCTCACACACACACACCTTGTTGGCTCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCACACACACACACCTTGTTGGCTCCACT  550

seq1  TTTTTTTTCTAGAGAATTCTAATATGATGGTATCTTAGTTTTAATTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTAGAGAATTCTAATATGATGGTATCTTAGTTTTAATTGTTA  600

seq1  ACTTGATATGACCTAGAGCAGTGGTTCTCAACTTTCCTAATGCCGTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATATGACCTAGAGCAGTGGTTCTCAACTTTCCTAATGCCGTGACT  650

seq1  CTTTGATACAGTTCTTCACATTGTGGTGACCCCAACCATAAAATTTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATACAGTTCTTCACATTGTGGTGACCCCAACCATAAAATTTTTGG  700

seq1  TGCTACTTCATAACTGTAATTTGACACTGTTGTGAATAGTAATGTCACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTCATAACTGTAATTTGACACTGTTGTGAATAGTAATGTCACTA  750

seq1  TCTGATATGCAGGAGATCTGATATCTACAGGTTGAGACCTGCTGGCCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATGCAGGAGATCTGATATCTACAGGTTGAGACCTGCTGGCCTAG  800

seq1  AGTCATCTGAGAAGGGAGTCCCTGTTGAGAGATTTCCCAGATCAGATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGAGAAGGGAGTCCCTGTTGAGAGATTTCCCAGATCAGATTGG  850

seq1  CCTATGAAGTTATTGCACTGTTTGTTAATTGATGTTGGAGGGCCTGTTGT  900
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  CCTATGAAGTTATTGCACTG-TTGTTAATTGATGTTGGAGGGCCTGGTGT  899

seq1  GAGCAGTGTCATTCTCTGGGCAGGCAGGTGCTCCTGAACTGTATATGACA  950
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  GAGCAGTGTCATTCTCTGGGCAGGCA-GTGCTTCTGAACTGTATATGACA  948

seq1  GCT-AGCTAAGCGTGAGCTTTTTGAGCAGAACAGCAAGCTGACCTCC-AT  998
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTAAGCTAAGCGTGAGCTTTTTGAGCAGAACAGCAAGCTGACCTCCAAT  998

seq1  GGTTTCTACTTCAAGTTCCCACTTGAGTTTCTACCCCGACTTCCCTCAGT  1048
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTTTCTACTTCAAGTTCCCAC-TGAGTTTCTACCCCGACTTCCCTCAGT  1047

seq1  GTGTGTTCTTACAGC-AACAAAGATCATCCTAGAGCATATGGCAAGGCAA  1097
      | ||| || |||||| ||||| |||||| |||||||||||||||||||||
seq2  GGGTGATC-TACAGCAAACAAGGATCAT-CTAGAGCATATGGCAAGGCAA  1095

seq1  TGGGTTCTGTAGTCTTTCTTAGAGAGGCATATACACGTATAAT-CCTGGT  1146
      | || |||||| || |||||| ||| |  ||  |||  ||||| ||||||
seq2  T-GGATCTGTAATCCTTCTTAAAGAAGGCTAATCACCGATAATCCCTGGT  1144

seq1  CACAGTAAGAGGAAGGATATGGGCCAATAGT  1177
      ||||| |||||||| || ||||||| |||||
seq2  CACAGAAAGAGGAAAGAAATGGGCC-ATAGT  1174

seq1: chr3_95529732_95530221
seq2: B6Ng01-151O05.g_162_615 (reverse)

seq1  TCTGTCTCTGTCTCTCTGTCTCTCTCTCCCTCTCTGCCTGCTACCTGTAA  50
      ||||||||||||||||||||||| |||| |||| ||  ||    ||||  
seq2  TCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGTGTGTG---TCTGTGC  47

seq1  AACAGAATGTAAAGTCCTCA--GCTACTGCTCCAACATCATGCC---TGT  95
      |   | ||||| || ||| |  || | |  ||  |  | || ||   |||
seq2  ACATGCATGTACAGGCCTGAGGGCAAAT--TCACATGTTATTCCTGATGT  95

seq1  CTG---CTC-CCTACCACGAAGATCATGGACTCACCTCTGAAACTGTAAG  141
      | |   |||  ||    |  |||  |  | ||  || |||| | ||    
seq2  CAGTCACTCATCTTATTCTGAGACAAGAGTCTTTCC-CTGACATTG----  140

seq1  TAAGCTC-CCGATTAAATGCTTTCT-------TTGATAAAAAGCTGC-CT  182
        ||||| || | |  | |||  ||        || | |  || | | | 
seq2  --AGCTCACCAAGT--AGGCTAGCTAGGATGGCTGTTCAGCAGTTCCTCA  186

seq1  TGGCCATGGTGTTTCTTCGCAGCAACAGAACAGTGACTAACAGTGACTAA  232
      ||| | || ||   ||| ||  |  ||| ||   |  |  |||||     
seq2  TGGACTTGCTG--CCTTTGCCTCCTCAGCACTAGGCTTGCCAGTG-----  229

seq1  GACATTAACAGTACAGTCGTCTCCCATTGCATCCACTTTCCTGAGAATGA  282
        || |  || || |   | ||    ||||||      | ||| ||  ||
seq2  --CA-TGCCACTATATCTGGCT--TTTTGCAT---GGGTGCTG-GA--GA  268

seq1  CGTGATTTCATTCTTCTTTATGGTTGAAAAAAAAAGCCACGTTGGAGCTG  332
      | |||  ||||   |||| |||  || |||  ||   |||||        
seq2  C-TGAACTCAT--GTCTTCATGCCTGCAAAGCAA--GCACGT--------  305

seq1  GGAAATGGCTCAGTTAGTAATG-TGCCTGCTGCTTAAGAACTGACTCAGG  381
               | | | ||  ||| |  | ||  | ||||||     |    
seq2  ---------TTACTAAGCCATGCTTACAGC-CCCTAAGAATATTTT----  341

seq1  GTCGCTAGCACAT------GCCTGTGTGTGTCTGTTTGCATGT---ATAT  422
       || |||  | ||      || | | ||||||  |||  || |   | | 
seq2  TTCTCTAAAATATTTCTTGGCTTTTATGTGTCCTTTTTAATTTTTAAAAA  391

seq1  TTATGTGTGTATGTGTATCTGTGTGTGTATATGTG-TATGTCTGTGTATA  471
       ||| | | ||  | ||  ||| | | | | ||||  |||| ||      
seq2  CTATTTTTTTA-CTTTACTTGTTTCTCTCTGTGTGCCATGTGTG-----C  435

seq1  TGTGTGTGTGTGTGTATGT  490
        |||||||||||||||||
seq2  CATGTGTGTGTGTGTATGT  454