BAC Information

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BAC

Clone NameB6Ng01-152D02
Chromosome3 (Build37)
Map Location 45,385,753 - 45,386,316
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152D02.bB6Ng01-152D02.g
ACCDH947827DH947828
length1,0361,051
definitionDH947827|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D02, 5' end.DH947828|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctaaattttgggggttacttatgtatactactatataatctgc
aaataatgatattttgacttcctcctttccaatttgaatcccttttgttg
tctaattgctctggctaggacttcaagtactaggttgaataggtagggac
agagtgggcagccttgtctagtccctaattttagtgggattttttcaagt
ttctctccatttagttcgatgttggctactggtttgctgtatattgcttt
tactatatttaggtctgggccttgaattcctgatctttccaagactttta
acatgaatgagtgttggattttgtcaaatgctttctcatcatttaatgag
atgatcatgtgatgtttgtctttgagtttgtttattagtgggttatgttg
atggatttccatatattgaaccgtccctgtgtctctgtgatgaagcctac
ttgatcatgatggatgatggttttgatgtgttattggattcggtttgcaa
gaattttattgagtatttttgcattgatatacataacagaatttgatctg
aaattttctctctttgttgattctttgtgtggtttaggtattagtgtaat
tgtggcttcatagaacgaattaggtagggtaccttctatttcaagttgag
gagaattggaattaggtcctctttgaaggtatgatagaactctgcactaa
acccatctggtcctgggcttcttttggttgggagaatattaatgactgct
tctatttcttttatgggatatggggataatcttgcatttggagtgtagat
attcacaaatgagagctcatcttggtagatttttcttctgatgagtatga
ggtgcccctctttgtctttttttcataactttaggttgaaagtcgaattt
tattctatattagaatgactaactgcagtgttttcttgggacccttgctt
ggaaaatgttttcagcctttactctgaggtagcgttgtcttgtcttctga
agtgggttcttgtatgtacgagacagtccgtatact
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
ttcttcaggatctgttgttatgtctcccttttcattttctgattttgtta
attaggattttgtccctgtgcccttttagtgagtctagctaagggttatc
tatcttgttgattttctcaaagaaccaactcctcgtttggttaattcttg
aatagttcttcttgtttccacttgggtgatttcacccctgagtttgatta
tttcctgccgtctacttcctcttgggtggaatttgctttccttttttcta
gagcttttagatgtgtgtcaagctgctagtatgtgctctctccgtttttc
ttgaaggcactctagctatgaagtttccctccttaaattgctttcattgt
gttcccaaaggttggggtacgtgtggcttcatttcattaaactctaaaaa
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45385753_45386316
seq2: B6Ng01-152D02.g_556_1118 (reverse)

seq1  CTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGG  50
      ||||||||||||||||| |||||||||||| |||||||| ||||||||||
seq2  CTTTTTAGAGTTTAATG-AAATGAAGCCAC-ACGTACCCCAACCTTTGGG  48

seq1  -ACACAATGAAAGCATTTCTAAGAGGGAAAC-TCATAGCTATGAGTGCCT  98
       |||||||||||||| ||  | ||||||||| ||||||||| ||||||||
seq2  AACACAATGAAAGCAATTTAAGGAGGGAAACTTCATAGCTA-GAGTGCCT  97

seq1  TCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTA  148
      ||||||||||   ||||||||||||||||||||||||||| |||||||||
seq2  TCAAGAAAAA--CGGAGAGAGCACATACTAGCAGCTTGAC-ACACATCTA  144

seq1  AAAGCTCTAGAAAAAAAGGAAGCAAATT-CACCCAAGAGG-AGTAGACGG  196
      |||||||||||||||| | ||||||||| ||||||||||| |||||||||
seq2  AAAGCTCTAGAAAAAAGGAAAGCAAATTCCACCCAAGAGGAAGTAGACGG  194

seq1  CAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAG  246
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGGAAATAATCAAACTCAGGGGTGAAATCACCCAAGTGGAAACAAGAAG  244

seq1  AACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCA  296
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTC-AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCA  293

seq1  ACAAGATAGATAAACCCTTAGCTAGACTCACT-AAAGGGCACAGGGACAA  345
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  ACAAGATAGAT-AACCCTTAGCTAGACTCACTAAAAGGGCACAGGGACAA  342

seq1  AATCCTAATTAACAAAATCAG-AAATGAAAAGGGAGACATAACAACAGAT  394
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATCCTAATTAACAAAATCAGAAAATGAAAAGGGAGACATAACAACAGAT  392

seq1  CCTGAAG-AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT  443
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGAAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT  442

seq1  CAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATAC  492

seq1  CAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCAT  542

seq1  ATCCCCTAAAGAAATAGAAGC  564
      |||||||||||||||||||||
seq2  ATCCCCTAAAGAAATAGAAGC  563