BAC Information

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BAC

Clone NameB6Ng01-152E24
Chromosome3 (Build37)
Map Location 40,627,507 - 40,726,647
singlet/doubletdoublet
Overlap geneMfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Upstream geneLOC100041458, LOC100040882, Intu, Slc25a31, Hspa4l, Plk4
Downstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152E24.bB6Ng01-152E24.g
ACCDH947917DH947918
length1,1011,126
definitionDH947917|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E24, 5' end.DH947918|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,627,507 - 40,628,607)(40,725,522 - 40,726,647)
sequence
gaattccaggccagtcagttctataggtctatgctgtgaattccagacta
gccaaggctacatactaagaccctgtcttcgcaaaaaaaggaaaaacata
tgagagaaaacggtaacacatgagaaaaaactgcaacacaagttacttta
ctagcgcattcatttatattaggcctgtttcatatatcttttttattttt
caaaaaaaagatttaaagtaaaagtaaaaacatataacttactttttgga
aagtaatttaacccccatgaagacaagaactgcctcaactccaaaagcaa
caaggaggattccatcatagagcacagcctgctcctgggtccaggcgtac
atatccagtgttagtggggtgaggattctaagaaaaggagatggtgcttc
tttaaaaggtagttgttaactaagaattattaataaggacattaataata
cctgtaagaatatgcggccgtttaaatttcagtttaaataagaaacacag
ttacactgcagaaggcttgcaaacagaagacagcataaataaattacacc
cctaccctcccatagtgtagcaatgactcatagcgaggtggtgcttttag
ctttaagggtgggactctggacgactgaccagcttctctagtggtctgca
gagggaccactattccctggaaagagcctctacaaagggaaattttacat
tgatacctttttcaaaatcagaaatgtatttcagttttgctggaagtgta
cggtctagattgtttcccttgttattaaaagtgtgcatgttaccagcagt
gtcacactatctatcacattatgattagcgtttctttccatcagtactac
ttactgtgtttctttccctccctatgaacacctctgccttcatatggctt
tctccttccttgccaaggctatcgctacactctactgtcttctgttggct
aacacaaaacatatatattttaatgtttcattacaaagaccaatacagta
tcctagcccttgaattcgatgagctgatagaagaaagcagaatgcattgg
tttttcagggctgacacaggttaacattgtactagcaattccctctctgg
t
gaattcccgaacagccagggctatacagggaaaccctgtctcgaaccact
aacatccctcctgttttgtttttaacaagtttagccattttcactggcac
acaattacactttattttttctcctgagaggaatgtagcttgagctagca
gagaactcatatgtatccctgaaatctgagatcttcctgcctctgcctcc
tacgtgctgaaatttcatttatgtgctactgtgcctgactacaaaagcat
gttttaatccattatttttgagactgggccttgccatgtataccagactg
acctcaaattctagatctacctgccttagtcttagtgctgggattacagg
tatgtggcatgaaacctgactaaattaatttaaatagaaagcaacatacc
tgaaattttctattataaatttttgtttgtttgtttttcgatacagggtt
tctctgtgtagccctggctacagaaatctgcctggctctggctctgcctc
ccagtgctgcgattaaacgtgagcaccatcactgctcagcctattattaa
tttttgatacagggtctattatagctcaggatgtctgaatttctgaccca
ctaacctttgcttcacaggtgctggcattacagaagggccactgtgccct
gcctcaggggaattctcctaaagagaagcctggtctctgcaaccagaggc
ttggtagatagcaggtgttaaactgtaggttggctgaggttctgattcca
aactgctatctcctcacagaactaatgtaagaggcatcaactaaataatc
attacgtgcatttgtgagcattttgacaagatttcattggaccgctgaag
cagagcagggttcccgccaggctgggctccacagtgaagccctgtttcaa
taatgttaacagaacaacccgtatgctctcctccattaaaattgatcaca
gtcccatttgaaaagaccccactccttggttctcgttcttagtagttttc
ttactcttcagtacaaaattaattttggccttgcatggaaagaccaaata
tctgaggttctggtctcctgtttaccgcccgtctctcttatagaaatacc
taatggtgggaggctctgagaacaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40627507_40628607
seq2: B6Ng01-152E24.b_44_1144

seq1  GAATTCCAGGCCAGTCAGTTCTATAGGTCTATGCTGTGAATTCCAGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGTCAGTTCTATAGGTCTATGCTGTGAATTCCAGACTA  50

seq1  GCCAAGGCTACATACTAAGACCCTGTCTTCGCAAAAAAAGGAAAAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCTACATACTAAGACCCTGTCTTCGCAAAAAAAGGAAAAACATA  100

seq1  TGAGAGAAAACGGTAACACATGAGAAAAAACTGCAACACAAGTTACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAAACGGTAACACATGAGAAAAAACTGCAACACAAGTTACTTTA  150

seq1  CTAGCGCATTCATTTATATTAGGCCTGTTTCATATATCTTTTTTATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGCATTCATTTATATTAGGCCTGTTTCATATATCTTTTTTATTTTT  200

seq1  CAAAAAAAAGATTTAAAGTAAAAGTAAAAACATATAACTTACTTTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAGATTTAAAGTAAAAGTAAAAACATATAACTTACTTTTTGGA  250

seq1  AAGTAATTTAACCCCCATGAAGACAAGAACTGCCTCAACTCCAAAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTTAACCCCCATGAAGACAAGAACTGCCTCAACTCCAAAAGCAA  300

seq1  CAAGGAGGATTCCATCATAGAGCACAGCCTGCTCCTGGGTCCAGGCGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGATTCCATCATAGAGCACAGCCTGCTCCTGGGTCCAGGCGTAC  350

seq1  ATATCCAGTGTTAGTGGGGTGAGGATTCTAAGAAAAGGAGATGGTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGTGTTAGTGGGGTGAGGATTCTAAGAAAAGGAGATGGTGCTTC  400

seq1  TTTAAAAGGTAGTTGTTAACTAAGAATTATTAATAAGGACATTAATAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGTAGTTGTTAACTAAGAATTATTAATAAGGACATTAATAATA  450

seq1  CCTGTAAGAATATGCGGCCGTTTAAATTTCAGTTTAAATAAGAAACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGAATATGCGGCCGTTTAAATTTCAGTTTAAATAAGAAACACAG  500

seq1  TTACACTGCAGAAGGCTTGCAAACAGAAGACAGCATAAATAAATTACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGCAGAAGGCTTGCAAACAGAAGACAGCATAAATAAATTACACC  550

seq1  CCTACCCTCCCATAGTGTAGCAATGACTCATAGCGAGGTGGTGCTTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTCCCATAGTGTAGCAATGACTCATAGCGAGGTGGTGCTTTTAG  600

seq1  CTTTAAGGGTGGGACTCTGGACGACTGACCAGCTTCTCTAGTGGTCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGGTGGGACTCTGGACGACTGACCAGCTTCTCTAGTGGTCTGCA  650

seq1  GAGGGACCACTATTCCCTGGAAAGAGCCTCTACAAAGGGAAATTTTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACCACTATTCCCTGGAAAGAGCCTCTACAAAGGGAAATTTTACAT  700

seq1  TGATACCTTTTTCAAAATCAGAAATGTATTTCAGTTTTGCTGGAAGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTTTTTCAAAATCAGAAATGTATTTCAGTTTTGCTGGAAGTGTA  750

seq1  CGGTCTAGATTGTTTCCCTTGTTATTAAAAGTGTGCATGTTACCAGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTAGATTGTTTCCCTTGTTATTAAAAGTGTGCATGTTACCAGCAGT  800

seq1  GTCACACTATCTATCACATTATGATTAGCGTTTCTTTCCATCAGTACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTATCTATCACATTATGATTAGCGTTTCTTTCCATCAGTACTAC  850

seq1  TTACTGTGTTTCTTTCCCTCCCTATGAACACCTCTGCCTTCATATGGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTTTCTTTCCCTCCCTATGAACACCTCTGCCTTCATATGGCTT  900

seq1  TCTCCTTCCTTGCCAAGGCTATCGCTACACTCTACTGTCTTCTGTTGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCCTTGCCAAGGCTATCGCTACACTCTACTGTCTTCTGTTGGCT  950

seq1  AACAACAAAACAATATATATTTTAAATGTTTCATTACAAAGAACAATACA  1000
      ||| ||||||| ||||||||||| |||||||||||||||||| |||||||
seq2  AAC-ACAAAAC-ATATATATTTT-AATGTTTCATTACAAAGACCAATACA  997

seq1  GTATCCTAGCCTTTGAATTCAGATGAGCTGATAG-AGAAAGCAG-ATGCA  1048
      ||||||||||| |||||||| ||||||||||||| ||||||||| |||||
seq2  GTATCCTAGCCCTTGAATTC-GATGAGCTGATAGAAGAAAGCAGAATGCA  1046

seq1  -TGGTTTTTCCAAGGGCT-ACACA-GTTAACA-TGTACCTAGCAATT-CC  1093
       |||||||||  |||||| ||||| ||||||| |||| ||||||||| ||
seq2  TTGGTTTTTC--AGGGCTGACACAGGTTAACATTGTA-CTAGCAATTCCC  1093

seq1  TCTCTGGT  1101
      ||||||||
seq2  TCTCTGGT  1101

seq1: chr3_40725522_40726647
seq2: B6Ng01-152E24.g_66_1191 (reverse)

seq1  CTTG-TCTCAGAGCCTCACA-CACTAGTGTA-TTCTACTAAGAGAACCGG  47
      |||| |||||||||||| || || ||| ||| ||||| |||||||  |||
seq2  CTTGTTCTCAGAGCCTCCCACCATTAG-GTATTTCTA-TAAGAGAGACGG  48

seq1  GCGGT-AACAGGA-AGCAGAACCTCAGA-ATTTGTCATTTCCATGCAAGG  94
      ||||| ||||||| | |||||||||||| |||||   |||||||||||||
seq2  GCGGTAAACAGGAGACCAGAACCTCAGATATTTGGTCTTTCCATGCAAGG  98

seq1  CCAAAATAAATTTTGTACTG-AGAGATAGAAAACTAACTTAAGAACAGAA  143
      ||||||| |||||||||||| ||||  |||||||||   ||||||| || 
seq2  CCAAAATTAATTTTGTACTGAAGAGTAAGAAAACTA--CTAAGAAC-GAG  145

seq1  AACAAAGAAAGTGGGGTCTTTTCAAAT-GGACTGTGATCAATTTTGATGG  192
      ||| |||  |||||||||||||||||| ||||||||||||||||| ||||
seq2  AACCAAG-GAGTGGGGTCTTTTCAAATGGGACTGTGATCAATTTTAATGG  194

seq1  AGGAGAGCATACGGTTTGTTCTTGTTAACATTATTGAAACAGGGCTTCAC  242
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  AGGAGAGCATACGGGTTGTTC-TGTTAACATTATTGAAACAGGGCTTCAC  243

seq1  TGTGGAGCCCAGCCTGGCGGGAACCCTGCTCCTGCTTCAGCGGTCCAATG  292
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGGAGCCCAGCCTGGCGGGAACCCTGCT-CTGCTTCAGCGGTCCAATG  292

seq1  AAATCTTGTCAAAATGCTCACAAATGCACGTAATGATTATTTAGTTGATG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTCAAAATGCTCACAAATGCACGTAATGATTATTTAGTTGATG  342

seq1  CCTCTTACATTAGTTCTGTGAGGAGATAGCAGTTTGGAATCAGAACCTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTACATTAGTTCTGTGAGGAGATAGCAGTTTGGAATCAGAACCTCA  392

seq1  GCCAACCTACAGTTTAACACCTGCTATCTACCAAGCCTCTGGTTGCAGAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCTACAGTTTAACACCTGCTATCTACCAAGCCTCTGGTTGCAGAG  442

seq1  ACCAGGCTTCTCTTTAGGAGAATTCCCCTGAGGCAGGGCACAGTGGCCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTTCTCTTTAGGAGAATTCCCCTGAGGCAGGGCACAGTGGCCCT  492

seq1  TCTGTAATGCCAGCACCTGTGAAGCAAAGGTTAGTGGGTCAGAAATTCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATGCCAGCACCTGTGAAGCAAAGGTTAGTGGGTCAGAAATTCAG  542

seq1  ACATCCTGAGCTATAATAGACCCTGTATCAAAAATTAATAATAGGCTGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGAGCTATAATAGACCCTGTATCAAAAATTAATAATAGGCTGAG  592

seq1  CAGTGATGGTGCTCACGTTTAATCGCAGCACTGGGAGGCAGAGCCAGAGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGGTGCTCACGTTTAATCGCAGCACTGGGAGGCAGAGCCAGAGC  642

seq1  CAGGCAGATTTCTGTAGCCAGGGCTACACAGAGAAACCCTGTATCGAAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTCTGTAGCCAGGGCTACACAGAGAAACCCTGTATCGAAAA  692

seq1  ACAAACAAACAAAAATTTATAATAGAAAATTTCAGGTATGTTGCTTTCTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAAAATTTATAATAGAAAATTTCAGGTATGTTGCTTTCTA  742

seq1  TTTAAATTAATTTAGTCAGGTTTCATGCCACATACCTGTAATCCCAGCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTAATTTAGTCAGGTTTCATGCCACATACCTGTAATCCCAGCAC  792

seq1  TAAGACTAAGGCAGGTAGATCTAGAATTTGAGGTCAGTCTGGTATACATG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTAAGGCAGGTAGATCTAGAATTTGAGGTCAGTCTGGTATACATG  842

seq1  GCAAGGCCCAGTCTCAAAAATAATGGATTAAAACATGCTTTTGTAGTCAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCCCAGTCTCAAAAATAATGGATTAAAACATGCTTTTGTAGTCAG  892

seq1  GCACAGTAGCACATAAATGAAATTTCAGCACGTAGGAGGCAGAGGCAGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAGCACATAAATGAAATTTCAGCACGTAGGAGGCAGAGGCAGGA  942

seq1  AGATCTCAGATTTCAGGGATACATATGAGTTCTCTGCTAGCTCAAGCTAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCAGATTTCAGGGATACATATGAGTTCTCTGCTAGCTCAAGCTAC  992

seq1  ATTCCTCTCAGGAGAAAAAATAAAGTGTAATTGTGTGCCAGTGAAAATGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTCAGGAGAAAAAATAAAGTGTAATTGTGTGCCAGTGAAAATGG  1042

seq1  CTAAACTTGTTAAAAACAAAACAGGAGGGATGTTAGTGGTTCGAGACAGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTGTTAAAAACAAAACAGGAGGGATGTTAGTGGTTCGAGACAGG  1092

seq1  GTTTCCCTGTATAGCCCTGGCTGTTCTGGAATTC  1126
      |||||||||||||||||||||||||| |||||||
seq2  GTTTCCCTGTATAGCCCTGGCTGTTCGGGAATTC  1126