BAC Information

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BAC

Clone NameB6Ng01-152H14
Chromosome3 (Build37)
Map Location 57,642,038 - 57,764,968
singlet/doubletdoublet
Overlap genePfn2
Upstream geneLOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537
Downstream geneEG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152H14.bB6Ng01-152H14.g
ACCDH948039DH948040
length4691,073
definitionDH948039|Mus musculus domesticus DNA, BAC clone: B6Ng01-152H14, 5' end.DH948040|Mus musculus domesticus DNA, BAC clone: B6Ng01-152H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,764,500 - 57,764,968)(57,642,038 - 57,643,124)
sequence
tagatcaaggagacattcttgaggcctcaacccttactgaggatagcccc
tgggggagggagaaaagttcttttaggggatatggccactgacagatttc
ccatggatggctccatttccatgcacatacaggtatcccaacgtggattt
actgggttatcgacaacaataacaaaaagacatgatcttgagaatggcca
tattggtaataccagaggagagcaggagggtaaatgagggtaggtttgta
ttttactatatatgtgtatgagtttcttgaagaagaaaaaaaaactccaa
gaaaatattttctatggcagatagtctttgaaaagagttctgctgctaaa
agccagtgtcaaccagtcagaaaccaagtgtctcagatgggttagtagtc
aagggtagaggtaggtgtgttaggagagcaaagcctctgttaatgatggt
gatggtggtggtggtggtg
gaattcaagcaatcagttcaaaatgaataaaagggttagaaaaatttaca
cagaggctatctagtttcaagactaaagtacttccaggtcttaatccaat
gaagaataggtcggtgacaaaggtgacaggatttgatgttcagcctggag
aggtcgaaccatccaccacgtctcacgcacaccagctgctggtagcttga
ctaacagtgactcatgaaggaaggctgggcccgtgattttctggtaagac
cgttgaactactggacagtaactaccccaaagccttggtctccttgtgga
gaactgtagacataatgcaatccttctgcctttgcagaagtgtcacagct
aacctaagtggacacatcttgacgaacagcttagatattcaagcccttag
aattttaaattaggttttggggcaggagagatggctcagcagttaagagc
actgacttttcttccagaggtcctgtgttcaattcccagcaaccacatgg
tggttcacaaccatctgtaatgggatcagatgccctattctggtgtctga
agagagcgatagtgtggtcatatatataaaataaataatatttttaaaaa
gagaaatttaacttttatagagtttctttttattgatgctttttctagaa
atattttaaatattatgggaaatgctagtaaaattagatcaaattcctat
atagctttttcaaaacatatttccttattctataaactactttgtcataa
aatcgtataccaacataagaaaattttaagatattaaggaaaccataaga
aaagaagtcataatctaatgacagacaaagcaatggcagcactgttaata
tctgtaaaatgtaaaattttgtatggatatgaaaatacaaatatcattta
gtttggaaagtataagtttgttcaacatacactaatgacaccattgttct
ccttacaataaagcagagtctgtaaagaccattttagtttagtattcata
gaggttaaaccgggatggaatttatggaccaggtcaaacttctttttaat
gtgcacatggtgttgcctgcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57764500_57764968
seq2: B6Ng01-152H14.b_55_523 (reverse)

seq1  CACCACCACCACCACCATCACCATCATTAACAGAGGCTTTGCTCTCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCACCACCATCACCATCATTAACAGAGGCTTTGCTCTCCTAA  50

seq1  CACACCTACCTCTACCCTTGACTACTAACCCATCTGAGACACTTGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTACCTCTACCCTTGACTACTAACCCATCTGAGACACTTGGTTTC  100

seq1  TGACTGGTTGACACTGGCTTTTAGCAGCAGAACTCTTTTCAAAGACTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTTGACACTGGCTTTTAGCAGCAGAACTCTTTTCAAAGACTATC  150

seq1  TGCCATAGAAAATATTTTCTTGGAGTTTTTTTTTCTTCTTCAAGAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGAAAATATTTTCTTGGAGTTTTTTTTTCTTCTTCAAGAAACTC  200

seq1  ATACACATATATAGTAAAATACAAACCTACCCTCATTTACCCTCCTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATATATAGTAAAATACAAACCTACCCTCATTTACCCTCCTGCTC  250

seq1  TCCTCTGGTATTACCAATATGGCCATTCTCAAGATCATGTCTTTTTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGTATTACCAATATGGCCATTCTCAAGATCATGTCTTTTTGTTA  300

seq1  TTGTTGTCGATAACCCAGTAAATCCACGTTGGGATACCTGTATGTGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCGATAACCCAGTAAATCCACGTTGGGATACCTGTATGTGCATG  350

seq1  GAAATGGAGCCATCCATGGGAAATCTGTCAGTGGCCATATCCCCTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAGCCATCCATGGGAAATCTGTCAGTGGCCATATCCCCTAAAAG  400

seq1  AACTTTTCTCCCTCCCCCAGGGGCTATCCTCAGTAAGGGTTGAGGCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTCCCTCCCCCAGGGGCTATCCTCAGTAAGGGTTGAGGCCTCA  450

seq1  AGAATGTCTCCTTGATCTA  469
      |||||||||||||||||||
seq2  AGAATGTCTCCTTGATCTA  469

seq1: chr3_57642038_57643124
seq2: B6Ng01-152H14.g_67_1139

seq1  GAATTCAAGCAATCAGTTCAAAATGAATAAAAGGGTTAGAAAAATTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAATCAGTTCAAAATGAATAAAAGGGTTAGAAAAATTTACA  50

seq1  CAGAGGCTATCTAGTTTCAAGACTAAAGTACTTCCAGGTCTTAATCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTATCTAGTTTCAAGACTAAAGTACTTCCAGGTCTTAATCCAAT  100

seq1  GAAGAATAGGTCGGTGACAAAGGTGACAGGATTTGATGTTCAGCCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATAGGTCGGTGACAAAGGTGACAGGATTTGATGTTCAGCCTGGAG  150

seq1  AGGTCGAACCATCCACCACGTCTCACGCACACCAGCTGCTGGTAGCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGAACCATCCACCACGTCTCACGCACACCAGCTGCTGGTAGCTTGA  200

seq1  CTAACAGTGACTCATGAAGGAAGGCTGGGCCCGTGATTTTCTGGTAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGTGACTCATGAAGGAAGGCTGGGCCCGTGATTTTCTGGTAAGAC  250

seq1  CGTTGAACTACTGGACAGTAACTACCCCAAAGCCTTGGTCTCCTTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGAACTACTGGACAGTAACTACCCCAAAGCCTTGGTCTCCTTGTGGA  300

seq1  GAACTGTAGACATAATGCAATCCTTCTGCCTTTGCAGAAGTGTCACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTAGACATAATGCAATCCTTCTGCCTTTGCAGAAGTGTCACAGCT  350

seq1  AACCTAAGTGGACACATCTTGACGAACAGCTTAGATATTCAAGCCCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAGTGGACACATCTTGACGAACAGCTTAGATATTCAAGCCCTTAG  400

seq1  AATTTTAAATTAGGTTTTGGGGCAGGAGAGATGGCTCAGCAGTTAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAATTAGGTTTTGGGGCAGGAGAGATGGCTCAGCAGTTAAGAGC  450

seq1  ACTGACTTTTCTTCCAGAGGTCCTGTGTTCAATTCCCAGCAACCACATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTTTCTTCCAGAGGTCCTGTGTTCAATTCCCAGCAACCACATGG  500

seq1  TGGTTCACAACCATCTGTAATGGGATCAGATGCCCTATTCTGGTGTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACAACCATCTGTAATGGGATCAGATGCCCTATTCTGGTGTCTGA  550

seq1  AGAGAGCGATAGTGTGGTCATATATATAAAATAAATAATATTTTTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCGATAGTGTGGTCATATATATAAAATAAATAATATTTTTAAAAA  600

seq1  GAGAAATTTAACTTTTATAGAGGTTC-TTTTATTGATGCTTTTTCTAGAA  649
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  GAGAAATTTAACTTTTATAGAGTTTCTTTTTATTGATGCTTTTTCTAGAA  650

seq1  ATATTTTAAATATTATGGGAAATGCTAGTAAAATTAGATCAAATTCCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAATATTATGGGAAATGCTAGTAAAATTAGATCAAATTCCTAT  700

seq1  ATAGCTTTTTCAAAACATATTTCCTCATTCTATAAACTACTTTGTCATAA  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAGCTTTTTCAAAACATATTTCCTTATTCTATAAACTACTTTGTCATAA  750

seq1  AATCGTATACCAACATAAGAAAA-TTTAAGATATTAAGGAAACCATAAGA  798
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  AATCGTATACCAACATAAGAAAATTTTAAGATATTAAGGAAACCATAAG-  799

seq1  AAAAGAAGTCATAATCTAATGACAGACAAAGCAATGGCAGCACTGTTAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTCATAATCTAATGACAGACAAAGCAATGGCAGCACTGTTAAT  849

seq1  ATCTTGTAAAATGTAAAA-TTTGTATGGATATGAAAATACAAAATATCAT  897
      ||| |||||||||||||| ||||||||||||||||||||| |||||||| 
seq2  ATC-TGTAAAATGTAAAATTTTGTATGGATATGAAAATAC-AAATATCA-  896

seq1  TTTTAGTTTGGAAAGTATAAGGTTTTGTTCAACATACACTAATGACAACA  947
       ||||||||||||||||||||  |||||||||||||||||||||||| ||
seq2  -TTTAGTTTGGAAAGTATAAG--TTTGTTCAACATACACTAATGACACCA  943

seq1  TTGTTCTCCTTTACAATAAAGCAGAGGCTGGAAAGA-CACTTTAGTTTAG  996
      ||||||||| |||||||||||||||| ||| ||||| || ||||||||||
seq2  TTGTTCTCC-TTACAATAAAGCAGAGTCTGTAAAGACCATTTTAGTTTAG  992

seq1  TAATTACATAGAAGTTAAAACGGGATGGAAATTTATGGATCTAGGTTTTA  1046
      ||  | |||||| |||||| |||||||| |||||||||| | |||   | 
seq2  TA--TTCATAGAGGTTAAACCGGGATGG-AATTTATGGA-CCAGG---TC  1035

seq1  AAACTTTTTTTTTTTAATGTG--CATGGTGTTTTGCCTGCATC  1087
      ||||   || |||||||||||  |||||||  |||||||||||
seq2  AAAC---TTCTTTTTAATGTGCACATGGTG--TTGCCTGCATC  1073