BAC Information

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BAC

Clone NameB6Ng01-152I16
Chromosome3 (Build37)9 (Build37)
Map Location 77,668,572 - 77,669,67090,624,731 - 90,624,844
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152I16.bB6Ng01-152I16.g
ACCDH948091DH948092
length1,096439
definitionDH948091|Mus musculus domesticus DNA, BAC clone: B6Ng01-152I16, 5' end.DH948092|Mus musculus domesticus DNA, BAC clone: B6Ng01-152I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,668,572 - 77,669,670)(90,624,731 - 90,624,844)
sequence
gaattcaactcactaaacaatcccctgcatttcatatttgactgaccagg
gttgtgtgcgtattgctaagcacacatttagctgacacagtgcccttgga
tataacagcatctccagggaactattagtctgtggtacttccaccttgaa
gagagatttttacttttcctgcatatatacttagcttctcagttcaattc
atacttgcatgtttgcagaaggattgtaaactacattgcttgtaaacaaa
aacacttttcatataagatgaagctgagtagtgggtatccttttttgggg
gggggagcaaaggatttatttggcttacacttcaacatttcagtccttca
ttaagggatgtcaaggcaggaagtctgaataggaacccaagataggagcc
tggaggcagggactgaagcgggagttcatgaaggaatggtttactgggtt
tgcctcccatagtgttcatcttgctttcttaaaaaaaaagttagaaatta
aaatagaattatatcacttctcccttccatttcctctctccagcccctca
agtagtgggtatccttatagaactgactacacataccatattcaggcttg
ttgtgaaatagctggcttagttgactaatgaatgtccacatagttatcta
gtatcaccaagatgtacacaagacttgcttatcatataattaaaatttga
tacttcagaccaacacatcctcatttctatcatctcctaataactatgta
ctattctgttttaatgactatgtatgactttgatattctatgaataacca
tgttttacatataattttccttggttttctgacttactttacataatacc
tttaaggtcacccacattattgcaaatgtcacaatttatttctgcttctt
atttaatatatttaagtactataaatattcataaagataaaagaaaacat
gaagtttttttttttctttccctttacacgcccttcgaaatctcaggaag
agcaataccgtaccattcctcctttctcatactccaaagactttctgaat
cagtctatcttttcttacttataagaaagcccttttctaatcattg
gaattctttgtttagatctctaccctgttttaattggattgccaatgtct
agtttcttaaattctgtatatattctagatattagccctatatcagattt
gaaattggggcaaatcttttctcattctgtagagttctattttgtcctat
tgacagtaccctttgtcttatagaagcttttcagctttatgatgtctcat
ttattgactggcattctttttttttttttttttttttttttgcattaaaa
aatttattgacaacagagcacagagaaattgaagaaataaaatgttttta
acctttttattagatattttctttttttatatttcaaatgttatcccctt
tcctagtttcctttccaaaattcccctatcccttcccccttccccctgct
tcccaacccacccactcccattcctgtgcttgagctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77668572_77669670
seq2: B6Ng01-152I16.b_44_1139

seq1  GAATTCAACTCACTAAACAATCCCCTGCATTTCATATTTGACTGACCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCACTAAACAATCCCCTGCATTTCATATTTGACTGACCAGG  50

seq1  GTTGTGTGCGTATTGCTAAGCACACATTTAGCTGACACAGTGCCCTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGCGTATTGCTAAGCACACATTTAGCTGACACAGTGCCCTTGGA  100

seq1  TATAACAGCATCTCCAGGGAACTATTAGTCTGTGGTACTTCCACCTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGCATCTCCAGGGAACTATTAGTCTGTGGTACTTCCACCTTGAA  150

seq1  GAGAGATTTTTACTTTTCCTGCATATATACTTAGCTTCTCAGTTCAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTTTTACTTTTCCTGCATATATACTTAGCTTCTCAGTTCAATTC  200

seq1  ATACTTGCATGTTTGCAGAAGGATTGTAAACTACATTGCTTGTAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGCATGTTTGCAGAAGGATTGTAAACTACATTGCTTGTAAACAAA  250

seq1  AACACTTTTCATATAAGATGAAGCTGAGTAGTGGGTATCCTTTTTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTCATATAAGATGAAGCTGAGTAGTGGGTATCCTTTTTTGGGG  300

seq1  GGGGGAGCAAAGGATTTATTTGGCTTACACTTCAACATTTCAGTCCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGCAAAGGATTTATTTGGCTTACACTTCAACATTTCAGTCCTTCA  350

seq1  TTAAGGGATGTCAAGGCAGGAAGTCTGAATAGGAACCCAAGATAGGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGATGTCAAGGCAGGAAGTCTGAATAGGAACCCAAGATAGGAGCC  400

seq1  TGGAGGCAGGGACTGAAGCGGGAGTTCATGAAGGAATGGTTTACTGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAGGGACTGAAGCGGGAGTTCATGAAGGAATGGTTTACTGGGTT  450

seq1  TGCCTCCCATAGTGTTCATCTTGCTTTCTTAAAAAAAAAGTTAGAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCATAGTGTTCATCTTGCTTTCTTAAAAAAAAAGTTAGAAATTA  500

seq1  AAATAGAATTATATCACTTCTCCCTTCCATTTCCTCTCTCCAGCCCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATTATATCACTTCTCCCTTCCATTTCCTCTCTCCAGCCCCTCA  550

seq1  AGTAGTGGGTATCCTTATAGAACTGACTACACATACCATATTCAGGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGGGTATCCTTATAGAACTGACTACACATACCATATTCAGGCTTG  600

seq1  TTGTGAAATAGCTGGCTTAGTTGACTAATGAATGTCCACATAGTTATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATAGCTGGCTTAGTTGACTAATGAATGTCCACATAGTTATCTA  650

seq1  GTATCACCAAGATGTACACAAGACTTGCTTATCATATAATTAAAATTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACCAAGATGTACACAAGACTTGCTTATCATATAATTAAAATTTGA  700

seq1  TACTTCAGACCAACACATCCTCATTTCTATCATCTCCTAATAACTATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGACCAACACATCCTCATTTCTATCATCTCCTAATAACTATGTA  750

seq1  CTATTCTGTTTTAATGACTATGTATGACTTTGATATTCTATGAATAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGTTTTAATGACTATGTATGACTTTGATATTCTATGAATAACCA  800

seq1  TG-TTTACATATAATTTTCCTTGGTTTTCTGACTTACTTTACATAATACC  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACATATAATTTTCCTTGGTTTTCTGACTTACTTTACATAATACC  850

seq1  TTTAAGGTCACCCACATTATTGCAAATGTCACAATTTATTTCTGCTTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTCACCCACATTATTGCAAATGTCACAATTTATTTCTGCTTCTT  900

seq1  ATTTTAATATATTTAAGTACTATAAAATATTCATAAAGATAAAAAAGAAA  949
      | ||||||||||||||||||||| ||||||||||||||||  ||||||||
seq2  A-TTTAATATATTTAAGTACTAT-AAATATTCATAAAGAT--AAAAGAAA  946

seq1  ACATGAAG-TTCTTTCTTTCTTTCCCTTTACCACGCCCTTCG-AATCTCA  997
      |||||||| || ||| |||||||||||||| ||||||||||| |||||||
seq2  ACATGAAGTTTTTTTTTTTCTTTCCCTTTA-CACGCCCTTCGAAATCTCA  995

seq1  GGAAGAGCAATACAGTACCATTTCCTCTTTCTTCCATAC-CTAAGGAC-T  1045
      ||||||||||||| |||||||| |  ||||||  ||||| | || ||| |
seq2  GGAAGAGCAATACCGTACCATTCCTCCTTTCT--CATACTCCAAAGACTT  1043

seq1  TCTGAATCAGTCTACCTTTTCTTACTTATAAGAAAGCCCTTTTCTAATTC  1095
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  TCTGAATCAGTCTATCTTTTCTTACTTATAAGAAAGCCCTTTTCTAA-TC  1092

seq1  ATTG  1099
      ||||
seq2  ATTG  1096

seq1: chr9_90624731_90624844
seq2: B6Ng01-152I16.g_364_478 (reverse)

seq1  GGAGTGGGTGGGTTGGTAAGCAGGGGG-AGGAGGGAGGGATAGGGGATTT  49
      |||||||||||||||| |||||||||| ||| || |||||||||||| ||
seq2  GGAGTGGGTGGGTTGGGAAGCAGGGGGAAGGGGGAAGGGATAGGGGAATT  50

seq1  TTGGAGGGGAAACTAGGAAAGGGGATAATATTTGAAATGTAAATAGAGAA  99
      |||||  ||||||||||||||||||||| ||||||||| |||| | ||||
seq2  TTGGAAAGGAAACTAGGAAAGGGGATAACATTTGAAATATAAAAAAAGAA  100

seq1  AATATCTAATAAAAA  114
      |||||||||||||||
seq2  AATATCTAATAAAAA  115