BAC Information

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BAC

Clone NameB6Ng01-152K11
Chromosome3 (Build37)
Map Location 126,166,475 - 126,281,943
singlet/doubletdoublet
Overlap genenone
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152K11.bB6Ng01-152K11.g
ACCDH948176DH948177
length1,0341,129
definitionDH948176|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K11, 5' end.DH948177|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,166,475 - 126,167,514)(126,280,804 - 126,281,943)
sequence
gaattctgtgtttatgcccccatgggctctggaagcatgaccaagtgttt
cctttgcacaatgtctccttgtttcagagatgtcatcacaggtatccgga
aacttttccctctgtgcccacttgagtatttttatttcctttgctctctt
tgctgcaacccggattatttctttaaaaagatgtcatgggtagaaactct
gtcttcacctatttaatattatttcattaatcagattttagcttaccttt
gtattttaattatagaactactatttgtagtttttattattaatactgcc
ttaacttttgtgtacatttctgattctcttttctttcctagatttgagaa
ctgttacaaaatcgacagtctttgcaggtacacagcatgttttgtgtctg
ctaaccatattggttgcctacttgtgtttttaatattttgttgtaagatg
atattcattgggactcagaaaaaaatgcaaggaaattggtttctcgagtt
atttccgccactagaggcttgagattcatctttctaggttcttagggcca
atcccaagccctttcaacttgggcatttgatttcataattcaatatgatt
cttgcctcttcataaccgtgcattcaatatcctgtaactaggaactccta
aaggactttttttattaattttaaattctactccacccagagccaacata
ttttaatatctacctaaaatttgttctaataaatatatgacaggaagaga
gaacgattggaagaattgactgctcacaatcagaagaaaggatactttag
ttgcatttctcattgacatgataaaatacccctataaaggcaacttaaca
aacaaaggagctattcagcttctggttgagggaacagcccatcatgatgg
gattggtggggagggggctgcaatgctatgatgatcatctagttgtattg
gtgccaaatcgcccctttccctctacctttttctcttcaattcagtgtaa
aggggttgtaggtggcaaaagaattagaagggta
gaattccatgctttcatgaaggaccaggatagaaagttatgatgagaact
ttttctgcatcaccttcctctctgcctttgctcacatgacttgcctatgg
tcagagctgcatcttacatctttagctgattgcctaacatttctggacat
taagaagccagctcctggaacttagctaaggagaactaggaaattcactc
cctaggggtttttgttgctagacaatgaaactaagtgttaacacaggaat
atggatattgatgttttgagctagtctgaatctattagttcagattcaag
aaatggacatttctgggccagccaagtgtttattttgttgtaaattgcga
ttataactgtaaggaagaaaaccatcttaacacactgccaagagtgccgt
ctctggatgttgtcatgtgcaatgtatgcctgcaaacatgtgactacaaa
gacactcaaatgaactatgtactccggtgggtgtgcttcttgtccacagc
gataaagaaaataagagatggcttgctgttcctccagctggaagaaaagt
aaatacagacccaaggatggctcttcaaacaccctagatgctacagataa
gaaaaatgatagcttttcccacactcagagaagtaaaataaaacataaca
aaacaaaacaaacttcagaaattaaaaacacaaacccccacatcgttgcc
aaggcagggccttttaatcttaagtcagtctgtttctctgctggtccagc
cctcagcctcagcctcagcctcagcctcagtctcagcctccagctttgca
tttattttttattttattttgtttgtttattttattttattttttcagtc
tgggttgttttggaagcttatcatccattctttataccacttctctattc
tgtgtttataatgtgctccaagaagagggaacatttctactaaacaacac
agcttattgtccattcttgagaagccatttatacacagaagtgaatgaaa
gttagatttattctatggtgcagtaggaggaaatccccttctgtgttcag
ttccgttatttcaggaaagatttgtccgtgctggaatcctaggagaatta
gaacatgaagcctatccagagagcacgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126166475_126167514
seq2: B6Ng01-152K11.b_44_1077

seq1  GAATTCTGTGTTTATGCCCCCATGGGCTCTGGAAGCATGACCAAGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTTATGCCCCCATGGGCTCTGGAAGCATGACCAAGTGTTT  50

seq1  CCTTTGCACAATGTCTCCTTGTTTCAGAGATGTCATCACAGGTATCCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCACAATGTCTCCTTGTTTCAGAGATGTCATCACAGGTATCCGGA  100

seq1  AACTTTTCCCTCTGTGCCCACTTGAGTATTTTTATTTCCTTTGCTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCCCTCTGTGCCCACTTGAGTATTTTTATTTCCTTTGCTCTCTT  150

seq1  TGCTGCAACCCGGATTATTTCTTTAAAAAGATGTCATGGGTAGAAACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAACCCGGATTATTTCTTTAAAAAGATGTCATGGGTAGAAACTCT  200

seq1  GTCTTCACCTATTTAATATTATTTCATTAATCAGATTTTAGCTTACCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCACCTATTTAATATTATTTCATTAATCAGATTTTAGCTTACCTTT  250

seq1  GTATTTTAATTATAGAACTACTATTTGTAGTTTTTATTATTAATACTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAATTATAGAACTACTATTTGTAGTTTTTATTATTAATACTGCC  300

seq1  TTAACTTTTGTGTACATTTCTGATTCTCTTTTCTTTCCTAGATTTGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTTGTGTACATTTCTGATTCTCTTTTCTTTCCTAGATTTGAGAA  350

seq1  CTGTTACAAAATCGACAGTCTTTGCAGGTACACAGCATGTTTTGTGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACAAAATCGACAGTCTTTGCAGGTACACAGCATGTTTTGTGTCTG  400

seq1  CTAACCATATTGGTTGCCTACTTGTGTTTTTAATATTTTGTTGTAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCATATTGGTTGCCTACTTGTGTTTTTAATATTTTGTTGTAAGATG  450

seq1  ATATTCATTGGGACTCAGAAAAAAATGCAAGGAAATTGGTTTCTCGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTGGGACTCAGAAAAAAATGCAAGGAAATTGGTTTCTCGAGTT  500

seq1  ATTTCCGCCACTAGAGGCTTGAGATTCATCTTTCTAGGTTCTTAGGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGCCACTAGAGGCTTGAGATTCATCTTTCTAGGTTCTTAGGGCCA  550

seq1  ATCCCAAGCCCTTTCAACTTGGGCATTTGATTTCATAATTCAATATGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAGCCCTTTCAACTTGGGCATTTGATTTCATAATTCAATATGATT  600

seq1  CTTGCCTCTTCATAACCGTGCATTCAATATCCTGTAACTAGGAACTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCTTCATAACCGTGCATTCAATATCCTGTAACTAGGAACTCCTA  650

seq1  AAGGACTTTTTTTATTAATTTTAAATTCTACTCCACCCAGAGCCAACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTTTTTTATTAATTTTAAATTCTACTCCACCCAGAGCCAACATA  700

seq1  TTTTAATATCTACCTAAAATTTGTTCTAATAAATATATGACAGGAAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATCTACCTAAAATTTGTTCTAATAAATATATGACAGGAAGAGA  750

seq1  GAACGATTGGAAGAATTGACTGCTCACAATCAGAAGAAAGGATACTTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGATTGGAAGAATTGACTGCTCACAATCAGAAGAAAGGATACTTTAG  800

seq1  TTGCATTTCTCATTGACATGATAAAATACCCCTATAAAGGCAACTTAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCTCATTGACATGATAAAATACCCCTATAAAGGCAACTTAACA  850

seq1  AACAAAGGAGCTATTCAGCTTCTGGTTGAGGGAACAGCCCATCATGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGAGCTATTCAGCTTCTGGTTGAGGGAACAGCCCATCATGATGG  900

seq1  GATTGGTGGGGA-GGGGCTGCAATGCTATGAATGAGTCATCTAGTTGTAT  949
      |||||||||||| ||||||||||||||||| |||| ||||||||||||||
seq2  GATTGGTGGGGAGGGGGCTGCAATGCTATG-ATGA-TCATCTAGTTGTAT  948

seq1  T-GTGCCAAAATCGCCCCTTTCCCCTCTATCCTTTTTTCTCTCCAATCTA  998
      | ||||| ||||||||||||| |||||||  | ||||||||| ||||  |
seq2  TGGTGCC-AAATCGCCCCTTT-CCCTCTA--CCTTTTTCTCTTCAATTCA  994

seq1  GTGT-AAGGGGTTGTAAGGATGCAAAAGGAATTGAGAAGGGTA  1040
      |||| |||||||||| |||  |||||| ||||| |||||||||
seq2  GTGTAAAGGGGTTGT-AGGTGGCAAAA-GAATT-AGAAGGGTA  1034

seq1: chr3_126280804_126281943
seq2: B6Ng01-152K11.g_70_1198 (reverse)

seq1  TACGTTGCTCTCCTTGGAATTGGCTTCATGTTCTAATTCTCTTAGGGTTC  50
      |||| |||||||  ||| || |||||||||||||||||||| |||| |||
seq2  TACG-TGCTCTC--TGG-ATAGGCTTCATGTTCTAATTCTCCTAGGATTC  46

seq1  CAGCAACGGACAAATCTTTCCTGAATTTACCGAACTGAACACAGGAGGGG  100
      |||| |||||||||||||||||||| | || ||||||||||||| |||||
seq2  CAGC-ACGGACAAATCTTTCCTGAAATAACGGAACTGAACACAGAAGGGG  95

seq1  ATTTCCTCCTACTGCA-CATAGAATAAATCTAACTTTCATTCACTTCTGT  149
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTCCTCCTACTGCACCATAGAATAAATCTAACTTTCATTCACTTCTGT  145

seq1  GTAT-AATGGCTTTCTCAAG-ATGGACAATAAGCTGTGTTGTTTAGTAGA  197
      |||| |||||| |||||||| |||||||||||||||||||||||||||| 
seq2  GTATAAATGGC-TTCTCAAGAATGGACAATAAGCTGTGTTGTTTAGTAG-  193

seq1  AAATGTTCCCTCCTTCTTTGGAGCACATTATAAACACAGAATTAGAGAAG  247
      ||||||||||| |||| |||||||||||||||||||||||| ||||||||
seq2  AAATGTTCCCT-CTTC-TTGGAGCACATTATAAACACAGAA-TAGAGAAG  240

seq1  TGGTATAAAAGAATGGATGATAAGCTTCCAAAACAACCCAGACTGAAAAA  297
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTAT-AAAGAATGGATGATAAGCTTCCAAAACAACCCAGACTG-AAAA  288

seq1  AATAAAATAAAATAAAACAAAACAAAATAAAATAAAAAATAAATGCAAAG  347
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  AATAAAATAAAATAAA--CAAACAAAATAAAATAAAAAATAAATGCAAAG  336

seq1  CTGGAGGCTGAGACTGAGGCTGAGGCTGAGGCTGAGGCTGAGGGCTGGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCTGAGACTGAGGCTGAGGCTGAGGCTGAGGCTGAGGGCTGGAC  386

seq1  CAGCAGAGAAACAGACTGACTTAAGATTAAAAGGCCCTGCCTTGGCAACG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGAAACAGACTGACTTAAGATTAAAAGGCCCTGCCTTGGCAACG  436

seq1  ATGTGGGGGTTTGTGTTTTTAATTTCTGAAGTTTGTTTTGTTTTGTTATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGGTTTGTGTTTTTAATTTCTGAAGTTTGTTTTGTTTTGTTATG  486

seq1  TTTTATTTTACTTCTCTGAGTGTGGGAAAAGCTATCATTTTTCTTATCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTACTTCTCTGAGTGTGGGAAAAGCTATCATTTTTCTTATCTG  536

seq1  TAGCATCTAGGGTGTTTGAAGAGCCATCCTTGGGTCTGTATTTACTTTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTAGGGTGTTTGAAGAGCCATCCTTGGGTCTGTATTTACTTTTC  586

seq1  TTCCAGCTGGAGGAACAGCAAGCCATCTCTTATTTTCTTTATCGCTGTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTGGAGGAACAGCAAGCCATCTCTTATTTTCTTTATCGCTGTGG  636

seq1  ACAAGAAGCACACCCACCGGAGTACATAGTTCATTTGAGTGTCTTTGTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGCACACCCACCGGAGTACATAGTTCATTTGAGTGTCTTTGTAG  686

seq1  TCACATGTTTGCAGGCATACATTGCACATGACAACATCCAGAGACGGCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTTTGCAGGCATACATTGCACATGACAACATCCAGAGACGGCAC  736

seq1  TCTTGGCAGTGTGTTAAGATGGTTTTCTTCCTTACAGTTATAATCGCAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCAGTGTGTTAAGATGGTTTTCTTCCTTACAGTTATAATCGCAAT  786

seq1  TTACAACAAAATAAACACTTGGCTGGCCCAGAAATGTCCATTTCTTGAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACAAAATAAACACTTGGCTGGCCCAGAAATGTCCATTTCTTGAAT  836

seq1  CTGAACTAATAGATTCAGACTAGCTCAAAACATCAATATCCATATTCCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTAATAGATTCAGACTAGCTCAAAACATCAATATCCATATTCCTG  886

seq1  TGTTAACACTTAGTTTCATTGTCTAGCAACAAAAACCCCTAGGGAGTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACACTTAGTTTCATTGTCTAGCAACAAAAACCCCTAGGGAGTGAA  936

seq1  TTTCCTAGTTCTCCTTAGCTAAGTTCCAGGAGCTGGCTTCTTAATGTCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGTTCTCCTTAGCTAAGTTCCAGGAGCTGGCTTCTTAATGTCCA  986

seq1  GAAATGTTAGGCAATCAGCTAAAGATGTAAGATGCAGCTCTGACCATAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTAGGCAATCAGCTAAAGATGTAAGATGCAGCTCTGACCATAGG  1036

seq1  CAAGTCATGTGAGCAAAGGCAGAGAGGAAGGTGATGCAGAAAAAGTTCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATGTGAGCAAAGGCAGAGAGGAAGGTGATGCAGAAAAAGTTCTC  1086

seq1  ATCATAACTTTCTATCCTGGTCCTTCATGAAAGCATGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACTTTCTATCCTGGTCCTTCATGAAAGCATGGAATTC  1129