BAC Information

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BAC

Clone NameB6Ng01-152N08
Chromosome3 (Build37)
Map Location 148,963,533 - 149,100,522
singlet/doubletdoublet
Overlap geneEG381483
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893
Downstream geneLOC100040620, LOC100040633, LOC100040455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152N08.bB6Ng01-152N08.g
ACCDH948309DH948310
length535740
definitionDH948309|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N08, 5' end.DH948310|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,099,988 - 149,100,522)(148,963,533 - 148,964,268)
sequence
gaattctgtgtgtgaggcacggtgaatgtctagaactcccatagctttgt
gggcttttggcgatctctctgagcactatgttaatgagttccttaaacac
agactgccattgatttcttcctgatgttcattgattcctctcgacattgc
ttcatgtatgtattctcccccaaacatctagtatcgatatttctctccct
agaactctgtccccaatccattataagcatatcattaaaacctgtttaat
ttcctaagaaagattacattaagagcactgtcagggccattatgccaata
gcaaaagataaacatgtatttggcagtgcaaaatgctattatctgtcggg
gtcaatctgtttattttacttagagcaatctgccgccaccaccactgcca
cccaatgttagtcacaaaagcagatccttctctgccaggaactgtttgga
ggaattctgacagcgaaatgccctcagtcacctactactgtgacataatc
tctgtttgtgtgtgtgtgtgtgtgtgtgtttgtgt
gaattcaccgaccatcctgtttacacaccttaatggctgtacacctggca
gttgctgttatgattggaatggaagttaagaagaccacgttcatccactg
ggcattgaatttataatttgacgtcgtcagatccatagcgccaaattgaa
aagcacatgtaattttctctcagtaatgggatcaatagatgtctaaggtg
tagcctctgtggcacggtgtggggcctctgtgcagtcttataagtctctg
ctgtgggctgaaggggaggagctgaagccactgtagtgcccacatggctt
ttctagggtgttttatgtacaatcacagtttcaaaaaaaaaaaaaaaact
cagctgggcatgcgcacaggcctgtttttctagtcctggataatctgtgc
cacataaaacattcctgagtaaattttttaaagacttgattggtccagaa
atataattattttccacttgtacatcatttcaacaagaaggatagattca
atctaaagttaaaaatataaatttatactccactcctggatatcttattc
tgtatcaattattttgaagattggtcaaaaaattatattgatagtaatat
tgttaattaatgaatacaaacttaaatctttgatgatggtagagagtatt
cattctatactttttaaaaaggaaagaaaaaaatgtcagaaatgctaagc
tagttggtatccaatagttagcatttcttttcctaggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149099988_149100522
seq2: B6Ng01-152N08.b_43_577 (reverse)

seq1  ACACACACACACACACACACACACACACAAACAGAGATTATGTCACAGTA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACACACACACACACACACACACAAACAGAGATTATGTCACAGTA  50

seq1  GTAGGTGACTGAGGGCATTTCGCTGTCAGAATTCCTCCAAACAGTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGACTGAGGGCATTTCGCTGTCAGAATTCCTCCAAACAGTTCCTG  100

seq1  GCAGAGAAGGATCTGCTTTTGTGACTAACATTGGGTGGCAGTGGTGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAGGATCTGCTTTTGTGACTAACATTGGGTGGCAGTGGTGGTGG  150

seq1  CGGCAGATTGCTCTAAGTAAAATAAACAGATTGACCCCGACAGATAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGATTGCTCTAAGTAAAATAAACAGATTGACCCCGACAGATAATAG  200

seq1  CATTTTGCACTGCCAAATACATGTTTATCTTTTGCTATTGGCATAATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCACTGCCAAATACATGTTTATCTTTTGCTATTGGCATAATGGC  250

seq1  CCTGACAGTGCTCTTAATGTAATCTTTCTTAGGAAATTAAACAGGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGTGCTCTTAATGTAATCTTTCTTAGGAAATTAAACAGGTTTTA  300

seq1  ATGATATGCTTATAATGGATTGGGGACAGAGTTCTAGGGAGAGAAATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGCTTATAATGGATTGGGGACAGAGTTCTAGGGAGAGAAATATC  350

seq1  GATACTAGATGTTTGGGGGAGAATACATACATGAAGCAATGTCGAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAGATGTTTGGGGGAGAATACATACATGAAGCAATGTCGAGAGGA  400

seq1  ATCAATGAACATCAGGAAGAAATCAATGGCAGTCTGTGTTTAAGGAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGAACATCAGGAAGAAATCAATGGCAGTCTGTGTTTAAGGAACTC  450

seq1  ATTAACATAGTGCTCAGAGAGATCGCCAAAAGCCCACAAAGCTATGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATAGTGCTCAGAGAGATCGCCAAAAGCCCACAAAGCTATGGGAG  500

seq1  TTCTCGACATTCACCGTGCCTCACACACAGAATTC  535
      |||| ||||||||||||||||||||||||||||||
seq2  TTCTAGACATTCACCGTGCCTCACACACAGAATTC  535

seq1: chr3_148963533_148964268
seq2: B6Ng01-152N08.g_69_808

seq1  GAATTCA-GGACCATCCTGTTTACACACCTTAATGGCTGTACACCTGGCA  49
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGACCATCCTGTTTACACACCTTAATGGCTGTACACCTGGCA  50

seq1  GTTGCTGTTATGATTGGAATGGAAGTTAAGAAGACCACGTTCATCCACTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTATGATTGGAATGGAAGTTAAGAAGACCACGTTCATCCACTG  100

seq1  GGCATTGAATTTATAATTTGACGTCGTCAGATCCATAGCGCCAAATTGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGAATTTATAATTTGACGTCGTCAGATCCATAGCGCCAAATTGAA  150

seq1  AAGCACATGTAATTTTCTCTCAGTAATGGGATCAATAGATGTCTAAGGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATGTAATTTTCTCTCAGTAATGGGATCAATAGATGTCTAAGGTG  200

seq1  TAGCCTCTGTGGCACGGTGTGGGGCCTCTGTGCAGTCTTATAAGTCTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTGTGGCACGGTGTGGGGCCTCTGTGCAGTCTTATAAGTCTCTG  250

seq1  CTGTGGGCTGAAGGGGAGGAGCTGAAGCCACTGTAGTGCCCACATGGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCTGAAGGGGAGGAGCTGAAGCCACTGTAGTGCCCACATGGCTT  300

seq1  TTCTAGGGTGTTTTATGTACAATCACAGTTTCAAAAAAAAAAAAAAAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGGTGTTTTATGTACAATCACAGTTTCAAAAAAAAAAAAAAAACT  350

seq1  CAGCTGGGCATGCGCACAGGCCTGTTTTTCTAGTCCTGGATAATCTGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGCATGCGCACAGGCCTGTTTTTCTAGTCCTGGATAATCTGTGC  400

seq1  CACATAAAACATTCCTGAGTAAATTTTTTAAAGACTTGATTGGTCCAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAACATTCCTGAGTAAATTTTTTAAAGACTTGATTGGTCCAGAA  450

seq1  ATATAATTATTTTCCACTTGTACATCATTTCAACAAGAAGGATAGATTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTATTTTCCACTTGTACATCATTTCAACAAGAAGGATAGATTCA  500

seq1  ATCTAAAGTTAAAAATATAAATTTATACTCCACTCCTGGATATCTTATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAGTTAAAAATATAAATTTATACTCCACTCCTGGATATCTTATTC  550

seq1  TGTATCAATTA-TTTGAAGATTGGTCAAAAAATTATATTGATAGTAATAT  598
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAATTATTTTGAAGATTGGTCAAAAAATTATATTGATAGTAATAT  600

seq1  TGTTAATTAATGAATACAAACTTAAATCTTTGATGATGGTAGAGAGTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTAATGAATACAAACTTAAATCTTTGATGATGGTAGAGAGTATT  650

seq1  CATTCAATACTTTTTAAAAAGGAAAGAAAAAAATGTCAGAAATGCTAAGC  698
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATACTTTTTAAAAAGGAAAGAAAAAAATGTCAGAAATGCTAAGC  700

seq1  TAGTTGGTATCCAATAGTTAGCATT--CTTTCCTAGGCTA  736
      |||||||||||||||||||||||||   ||||||||||||
seq2  TAGTTGGTATCCAATAGTTAGCATTTCTTTTCCTAGGCTA  740