BAC Information

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BAC

Clone NameB6Ng01-152P03
Chromosome3 (Build37)
Map Location 55,573,304 - 55,702,098
singlet/doubletdoublet
Overlap geneMab21l1, 4933417G07Rik
Upstream geneSmad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
Downstream geneLOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152P03.bB6Ng01-152P03.g
ACCDH948393DH948394
length1,1001,140
definitionDH948393|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P03, 5' end.DH948394|Mus musculus domesticus DNA, BAC clone: B6Ng01-152P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,573,304 - 55,574,422)(55,700,968 - 55,702,098)
sequence
gaattcttgggcatcaggcaagagcatgggaataaatcacttagagaatt
agctctgttccaggcttcattagttctaattatcccccaaatatgctcag
cagaatgtgcgtgggtctgctgggactgacgcacaatagagcaggcacca
tataaactcctctgagcacagagagagttcataaaacaactgagacactc
cttactgcagaagccaccagatgagacagacagggcagctccaagacaca
cagcaacaagacaaagctcaggcacactgtctttatgttctgttacccaa
acatcacagcaatgatcaggagcacccccccccgccccgcccccaagata
ccaatttcacttgactcaagtctggtggtacacacagcaatcccagcact
agtgaagcagaggcaggcagatctcttgtgaatccaaggcaaaccaagtc
tacataatgagtttcaggacagccagggctacacagagagactgtttcaa
aaataaataaaaagaaataacagtaatttcattttattattgggagtttg
gcaaataaaaacgtgaactttttcttaacagaaaattaggatttaaaatt
aagtaatagtcatagaaagtgaatataaatttcttcctttaaaaaacaca
cacaaaaaactagagacatggattatattttgcattttattacaatgctt
acttaactgtttcctactacttaatcatccacgcgggcatggtagtgcac
gcctttaatcccagcactcgggaggcagaggcaggcagatttctgagttc
gaggccagccttgtctacaaagtgagttccaggacagccaggccagggct
acaaagagaaaccctgtcttgaaaaaaccaaaaaccaaaaaccaaaaaaa
aaaaaaaaaaacctccaaaaaaccaaaccaaaccaaaccaaaaaacaaac
aaccccccgccccacaacaacaaacaaaaaagaaagctatttatcatcaa
tgttttttctttcaaacaactcagccactggagctctggctctcttttct
ctttacatcaactctgcatgtggtagccaactcagcatgcactcaagaaa

gaattccatcatttaaaaatatgatgtcattttaaaataaagacatttct
gtatcctatttaaactatttatgttgctatttatgtcatatcacatgatt
ttggtatgtttcttctctttgattactgatatttcacttaatgacatgca
taggcaaatgtataccttttgatgaatattttacccagttgtttttttac
agtactgaacttgaaacagacatatttctcagtatttgcgttgatgtgag
ggttttagcttctgaagtttctccgggagaagaggaacacgtttgcacta
gcatagagctaacagtcacttgtaatcagatttaacccagaggactagaa
aggccagatgtttgtgacagtgaatatgtctcttctttccctttttcatt
cccttcattgcagtctaactaaatcaaaaggtcaagaaaagggcaagacg
ttccagtcattcatcattggtataaaaaaagtttaatgaccctaagaaac
atcaaaaatactttttttgcatttataaaaatagtaaattagctataatt
ctgtttttagtgctgtgtagattatttcagaaacataaaagtgaatgcct
tttctctgtaattgagctgatagctttttcaagccagagtgtgttggctt
ccttgtattacaagcgcttcctcagtgcaggaccactagcatttgcttag
ttgtgggctcggaagtaaataatttaacttaaaatgtgttttaagcacag
ccttgcccaaggtgattactactgaataattttagacatttcacccattt
tttaagatacgatgaatcaggtcaataaatagcagtgaaaaacacatgag
aagtggctttcaccatcaacaattaccaaaatatttatgattttgattag
ataacacaaatcagcaagttgtttaaagtagaagtcagcgtgggcaggat
gaacctattgtcagacctgtaataggtttgtcatctctagttttataaga
acaatttgctgtgagtattaccaacttcaagccaggcaaacacaccccat
acctttgaatatactttcataatattcttatgacttattcaacagattga
cacgaagttaagaaagattttgtttaataagagattcgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55573304_55574422
seq2: B6Ng01-152P03.b_48_1147

seq1  GAATTCTTGGGCATCAGGCAAGAGCATGGGAATAAATCACTTAGAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGCATCAGGCAAGAGCATGGGAATAAATCACTTAGAGAATT  50

seq1  AGCTCTGTTCCAGGCTTCATTAGTTCTAATTATCCCCCAAATATGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTTCCAGGCTTCATTAGTTCTAATTATCCCCCAAATATGCTCAG  100

seq1  CAGAATGTGCGTGGGTCTGCTGGGACTGACGCACAATAGAGCAGGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGCGTGGGTCTGCTGGGACTGACGCACAATAGAGCAGGCACCA  150

seq1  TATAAACTCCTCTGAGCACAGAGAGAGTTCATAAAACAACTGAGACACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTCCTCTGAGCACAGAGAGAGTTCATAAAACAACTGAGACACTC  200

seq1  CTTACTGCAGAAGCCACCAGATGAGACAGACAGGGCAGCTCCAAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCAGAAGCCACCAGATGAGACAGACAGGGCAGCTCCAAGACACA  250

seq1  CAGCAACAAGACAAAGCTCAGGCACACTGTCTTTATGTTCTGTTACCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAAGACAAAGCTCAGGCACACTGTCTTTATGTTCTGTTACCCAA  300

seq1  ACATCACAGCAATGATCAGGAGCACCCCCCCCCGCCCCGCCCCCAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACAGCAATGATCAGGAGCACCCCCCCCCGCCCCGCCCCCAAGATA  350

seq1  CCAATTTCACTTGACTCAAGTCTGGTGGTACACACAGCAATCCCAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCACTTGACTCAAGTCTGGTGGTACACACAGCAATCCCAGCACT  400

seq1  AGTGAAGCAGAGGCAGGCAGATCTCTTGTGAATCCAAGGCAAACCAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGCAGAGGCAGGCAGATCTCTTGTGAATCCAAGGCAAACCAAGTC  450

seq1  TACATAATGAGTTTCAGGACAGCCAGGGCTACACAGAGAGACTGTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGAGTTTCAGGACAGCCAGGGCTACACAGAGAGACTGTTTCAA  500

seq1  AAATAAATAAAAAGAAATAACAGTAATTTCATTTTATTATTGGGAGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAAAGAAATAACAGTAATTTCATTTTATTATTGGGAGTTTG  550

seq1  GCAAATAAAAACGTGAACTTTTTCTTAACAGAAAATTAGGATTTAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAAAAACGTGAACTTTTTCTTAACAGAAAATTAGGATTTAAAATT  600

seq1  AAGTAATAGTCATAGAAAGTGAATATAAATTTCTTCCTTTAAAAAACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATAGTCATAGAAAGTGAATATAAATTTCTTCCTTTAAAAAACACA  650

seq1  CACAAAAAACTAGAGACATGGATTATATTTTGCATTTTATTACAATGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAACTAGAGACATGGATTATATTTTGCATTTTATTACAATGCTT  700

seq1  ACTTAACTGTTTCCTACTACTTAATCATCCACGCGGGCATGGTAGTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTGTTTCCTACTACTTAATCATCCACGCGGGCATGGTAGTGCAC  750

seq1  GCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  800

seq1  GAGGCCAGCCTTGTCTACAAAGTGAGTTCCAGGACAGCCAGGCCAGGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTTGTCTACAAAGTGAGTTCCAGGACAGCCAGGCCAGGGCT  850

seq1  ACAAAGAGAAACCCTGTCTTGAAAAAACCAAAAACCAAAAACCAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGAAACCCTGTCTTGAAAAAACCAAAAACCAAAAACCAAAAAAA  900

seq1  AAAAAAAAAAACCTCCAAAAAAACCAAACCAAACCAAACCAAAAAACAAA  950
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  AAAAAAAAAAACCTCC-AAAAAACCAAACCAAACCAAACCAAAAAAC-AA  948

seq1  ACAACCCCCCGCCCCCACAAACAAACAAACAAAAAAGAAAGCTATTTAAT  1000
      ||||||||||| ||||||||   |||||||||||||||||||||||| ||
seq2  ACAACCCCCCG-CCCCACAA--CAACAAACAAAAAAGAAAGCTATTT-AT  994

seq1  CATCCAATGTTTTTTCTTTCAAACAACTCAGCCCACTGGAGGCCCTCTGG  1050
      ||| ||||||||||||||||||||||||||| |||||||||   ||||||
seq2  CAT-CAATGTTTTTTCTTTCAAACAACTCAG-CCACTGGAG---CTCTGG  1039

seq1  CTCTC-TTTCTCTTTACCATCCAACTCTGGCATGGTGGGTAGCCAACTCA  1099
      ||||| |||||||||| ||| ||||||| |||||   |||||||||||| 
seq2  CTCTCTTTTCTCTTTA-CAT-CAACTCT-GCATG--TGGTAGCCAACTC-  1083

seq1  AGCATTGCACTTCCAAGAAA  1119
      |||| ||||||  |||||||
seq2  AGCA-TGCACT--CAAGAAA  1100

seq1: chr3_55700968_55702098
seq2: B6Ng01-152P03.g_67_1206 (reverse)

seq1  TTCGA--CTCTTATT-AACATAATCTTTC-TAACTTCGTGTCATTCTGTT  46
      |||||  |||||||| |||| |||||||| ||||||||||||| ||||||
seq2  TTCGAATCTCTTATTAAACAAAATCTTTCTTAACTTCGTGTCAATCTGTT  50

seq1  G-ATAGGTCATAGGAATTATTATGAAGTAATAATTCAGAGGTAT-GTGTG  94
      | ||| |||||| ||| |||||||||   || ||||| |||||| | |||
seq2  GAATAAGTCATAAGAA-TATTATGAAAGTAT-ATTCAAAGGTATGGGGTG  98

seq1  TGTTTGCCTGGCTTGAAGTTTGTAATACTCACAGCAAATTGTTC-TATAA  143
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  TGTTTGCCTGGCTTGAAGTTGGTAATACTCACAGCAAATTGTTCTTATAA  148

seq1  AACTAGAGATGACAAACCTATAACAGGTCTGAC-ATAGGTTCATCCTGCC  192
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  AACTAGAGATGACAAACCTATTACAGGTCTGACAATAGGTTCATCCTGCC  198

seq1  CACGCTGACTTCTACTTTAAAC-ACTTGCTGATTTGTGTTATCTCATCAA  241
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  CACGCTGACTTCTACTTTAAACAACTTGCTGATTTGTGTTATCTAATCAA  248

seq1  AATCATAAATATTTTGGTAATTGTTGATGGTGAAAGCCACTTCTCATGTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAATATTTTGGTAATTGTTGATGGTGAAAGCCACTTCTCATGTG  298

seq1  TTTTTCACTGCTATTTATTGACCTGATTCATCGTATCTTAAAAAATGGGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACTGCTATTTATTGACCTGATTCATCGTATCTTAAAAAATGGGT  348

seq1  GAAATGTCT-AAATTATTCAGTAGTAATCACCTTGGGCAAGGCTGTGCTT  390
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCTAAAATTATTCAGTAGTAATCACCTTGGGCAAGGCTGTGCTT  398

seq1  -AAACACATTTTAAGTTAAATTATTTACTTCCGAGCCCACAACTAAGCAA  439
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACATTTTAAGTTAAATTATTTACTTCCGAGCCCACAACTAAGCAA  448

seq1  ATGCTAGTGGTCCTGCACTGAGGAAGCGCTTGTAATACAAGGAAGCCAAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTGGTCCTGCACTGAGGAAGCGCTTGTAATACAAGGAAGCCAAC  498

seq1  ACACTCTGGCTTGAAAAAGCTATCAGCTCAATTACAGAGAAAAGGCATTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGGCTTGAAAAAGCTATCAGCTCAATTACAGAGAAAAGGCATTC  548

seq1  ACTTTTATGTTTCTGAAATAATCTACACAGCACTAAAAACAGAATTATAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGTTTCTGAAATAATCTACACAGCACTAAAAACAGAATTATAG  598

seq1  CTAATTTACTATTTTTATAAATGCAAAAAAAGTATTTTTGATGTTTCTTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTACTATTTTTATAAATGCAAAAAAAGTATTTTTGATGTTTCTTA  648

seq1  GGGTCATTAAACTTTTTTTATACCAATGATGAATGACTGGAACGTCTTGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATTAAACTTTTTTTATACCAATGATGAATGACTGGAACGTCTTGC  698

seq1  CCTTTTCTTGACCTTTTGATTTAGTTAGACTGCAATGAAGGGAATGAAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTGACCTTTTGATTTAGTTAGACTGCAATGAAGGGAATGAAAA  748

seq1  AGGGAAAGAAGAGACATATTCACTGTCACAAACATCTGGCCTTTCTAGTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGAAGAGACATATTCACTGTCACAAACATCTGGCCTTTCTAGTC  798

seq1  CTCTGGGTTAAATCTGATTACAAGTGACTGTTAGCTCTATGCTAGTGCAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTTAAATCTGATTACAAGTGACTGTTAGCTCTATGCTAGTGCAA  848

seq1  ACGTGTTCCTCTTCTCCCGGAGAAACTTCAGAAGCTAAAACCCTCACATC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTCCTCTTCTCCCGGAGAAACTTCAGAAGCTAAAACCCTCACATC  898

seq1  AACGCAAATACTGAGAAATATGTCTGTTTCAAGTTCAGTACTGTAAAAAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAAATACTGAGAAATATGTCTGTTTCAAGTTCAGTACTGTAAAAAA  948

seq1  ACAACTGGGTAAAATATTCATCAAAAGGTATACATTTGCCTATGCATGTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGGGTAAAATATTCATCAAAAGGTATACATTTGCCTATGCATGTC  998

seq1  ATTAAGTGAAATATCAGTAATCAAAGAGAAGAAACATACCAAAATCATGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGAAATATCAGTAATCAAAGAGAAGAAACATACCAAAATCATGT  1048

seq1  GATATGACATAAATAGCAACATAAATAGTTTAAATAGGATACAGAAATGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGACATAAATAGCAACATAAATAGTTTAAATAGGATACAGAAATGT  1098

seq1  CTTTATTTTAAAATGACATCATATTTTTAAATGATGGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTAAAATGACATCATATTTTTAAATGATGGAATTC  1140