BAC Information

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BAC

Clone NameB6Ng01-153A08
Chromosome3 (Build37)
Map Location 101,704,165 - 101,895,586
singlet/doubletdoublet
Overlap geneSlc22a15, Nhlh2, LOC100043047, Casq2
Upstream geneTrim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703
Downstream geneVangl1, EG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153A08.bB6Ng01-153A08.g
ACCDH948449DH948450
length1,212779
definitionDH948449|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A08, 5' end.DH948450|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,704,165 - 101,705,381)(101,894,808 - 101,895,586)
sequence
gaattcattcaagaatgaccagaaaagctgaaaagcagattttttccccc
caatgctaactagagaatggctggctagaagatgaagtatctccctagca
gagtcccatgaaatggagtggcagaggcaggccatcggctgacagacaga
tttccacaaccctgacctgactctgttttatgtgttttgtcttcagtttt
tctaaagtatcatttaaattcttattacttagctaccatgtgatctaaaa
ggttttactttgtccaaactcaactaagataaagtaagacaggatccctg
tatcttgaagacggttcgcagatttagctacctggagagggttggaagac
tagatcagttgctagctcattctcttacccaatggttgatatttagtgtc
aggataagagccaaaccaggaaatcatcaggacacaagaaattaaactat
aacaaatcaaaatataatgatgactctgacattttcaagaaacattttaa
tgaatctttagattttaaaaatcaaaatgtataaatcattcaagtcctta
ttggctggagattattaaagtggttcttccctcattttttgttaatggca
ggccaaattttaaagcaattagaatgaatattctctgtacactaattcat
ttcaaattgaagaattgcttgcaaatccaaaatatgaagatcccactttc
tctccatgtatattaataggaaagaaactcttttttaaaaatttttttga
ttagttattttcttcatttacatttcaaatgctatcccaaaagtccccca
gccgcccccctcccctatccacccactcccacttcttggccctggcattc
ccctgtactgaggcctataaagtttgcaagaccaaggggcctctcttccc
aatgatggccgactagtccatcttctgatacatatgcagctagagacacg
agctctgggggtactggttagttcataatgttattccacctatagggttg
caggacccctttagctcccttgggtactttccttagctcctacaatgggg
cctgtgaatcatccagtagctgactttattgtttggcacagcccacacat
agcctcacaagagaaaaccaataaaggtccttctaccaaactttgctggg
tatgccaatgtgttcgacgtggaggctgaatatggatggattcccagggt
aacagtctctag
gaattccctcctctgcaaatggcataacaaaataagacatcattttttgt
atagcatctatagtacacagaattcttactcatttgctttcacttggtac
ttttaattcaatgtgtttaaagctatatggttgatcttgcagatgtggtg
tgaggggatgaatctttgtggtttgctctgatcaagtaatgagtacatga
cagagaattcaagctctttggcttccttgttgcatacaaggatgggcata
taagtgtgatggtgttctttgaacacattcatatgttttggatgcatttc
tattgctgtgacaaaacacagggccaaagaaacttacaaaggaaagcatt
taacttaaggcttgtggctccagaggagtaaagtatatggccatcacttg
gtgagcatggcagcagacaggcagacatggtgctggagcagtaattggga
gcttacatacctagacaacaaccatgacgcagaaagagacaactagaacg
gcacaggcttttgaacctcaaagctcactcccagtgacattggacctcct
ccaaaaaggtcacacttctaatcctcccaaacagttccacccactgggga
gccaaccattctaacataggagacatgggagaggagggaggagagtatcg
ttattcaagccaccaaaaccatgtgagagctatcaatgatgttagacgca
ttgctgtctgaggaggctatgataacactaattagagactttccactggc
acacagatcaaatggggactgtttgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_101704165_101705381
seq2: B6Ng01-153A08.b_44_1255

seq1  GAATTCATTCAAGAATGACCAGAAAAGCTGAAAAGCAGATTTTTTCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAAGAATGACCAGAAAAGCTGAAAAGCAGATTTTTTCCCCC  50

seq1  CAATGCTAACTAGAGAATGGCTGGCTAGAAGATGAAGTATCTCCCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTAACTAGAGAATGGCTGGCTAGAAGATGAAGTATCTCCCTAGCA  100

seq1  GAGTCCCATGAAATGGAGTGGCAGAGGCAGGCCATCGGCTGACAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCATGAAATGGAGTGGCAGAGGCAGGCCATCGGCTGACAGACAGA  150

seq1  TTTCCACAACCCTGACCTGACTCTGTTTTATGTGTTTTGTCTTCAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAACCCTGACCTGACTCTGTTTTATGTGTTTTGTCTTCAGTTTT  200

seq1  TCTAAAGTATCATTTAAATTCTTATTACTTAGCTACCATGTGATCTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTATCATTTAAATTCTTATTACTTAGCTACCATGTGATCTAAAA  250

seq1  GGTTTTACTTTGTCCAAACTCAACTAAGATAAAGTAAGACAGGATCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACTTTGTCCAAACTCAACTAAGATAAAGTAAGACAGGATCCCTG  300

seq1  TATCTTGAAGACGGTTCGCAGATTTAGCTACCTGGAGAGGGTTGGAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGAAGACGGTTCGCAGATTTAGCTACCTGGAGAGGGTTGGAAGAC  350

seq1  TAGATCAGTTGCTAGCTCATTCTCTTACCCAATGGTTGATATTTAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGTTGCTAGCTCATTCTCTTACCCAATGGTTGATATTTAGTGTC  400

seq1  AGGATAAGAGCCAAACCAGGAAATCATCAGGACACAAGAAATTAAACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAGAGCCAAACCAGGAAATCATCAGGACACAAGAAATTAAACTAT  450

seq1  AACAAATCAAAATATAATGATGACTCTGACATTTTCAAGAAACATTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCAAAATATAATGATGACTCTGACATTTTCAAGAAACATTTTAA  500

seq1  TGAATCTTTAGATTTTAAAAATCAAAATGTATAAATCATTCAAGTCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTTAGATTTTAAAAATCAAAATGTATAAATCATTCAAGTCCTTA  550

seq1  TTGGCTGGAGATTATTAAAGTGGTTCTTCCCTCATTTTTTGTTAATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGAGATTATTAAAGTGGTTCTTCCCTCATTTTTTGTTAATGGCA  600

seq1  GGCCAAATTTTAAAGCAATTAGAATGAATATTCTCTGTACACTAATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAATTTTAAAGCAATTAGAATGAATATTCTCTGTACACTAATTCAT  650

seq1  TTCAAATTGAAGAATTGCTTGCAAATCCAAAATATGAAGATCCCACTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTGAAGAATTGCTTGCAAATCCAAAATATGAAGATCCCACTTTC  700

seq1  TCTCCATGTATATTAATAGGAAAGAAACTCTTTTTTAAAAATTTTTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGTATATTAATAGGAAAGAAACTCTTTTTTAAAAATTTTTTTGA  750

seq1  TTAGTTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCCA  800

seq1  GCCGCCCCCCTCCCCTATCCACCCACTCCCACTTCTTGGCCCTGGCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCCCCCTCCCCTATCCACCCACTCCCACTTCTTGGCCCTGGCATTC  850

seq1  CCCTGTACTGAGGCCTATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTACTGAGGCCTATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCC  900

seq1  AATGATGGCCGACTAGTCCATCTTCTGATACATATGCAGCTAGAGACACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGCCGACTAGTCCATCTTCTGATACATATGCAGCTAGAGACACG  950

seq1  AGCTCTGGGGGTACTGGTTAGTTCATATTGTTATTCCACCTATAGGGTTG  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCTCTGGGGGTACTGGTTAGTTCATAATGTTATTCCACCTATAGGGTTG  1000

seq1  CA-GACCCCTTTAGCTCCC-TGGGTACTTTCTCTAGCTCCTACATTGGGG  1048
      || |||||||||||||||| |||||||||||  ||||||||||| |||||
seq2  CAGGACCCCTTTAGCTCCCTTGGGTACTTTCCTTAGCTCCTACAATGGGG  1050

seq1  GCCCTGTGATCCATCCAGTAGCTGACTTATGTGTTTGCCA-GGCCCCAGC  1097
        |||||||  |||||||||||||||||   |||||| ||  ||||   |
seq2  --CCTGTGAATCATCCAGTAGCTGACTTTATTGTTTGGCACAGCCCACAC  1098

seq1  ATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGC  1147
      |||||||||||||||| | | | || | |||||||  | |||| | ||||
seq2  ATAGCCTCACAAGAGAAAACCA-ATAAAGGTCCTTCTACCAAACT-TTGC  1146

seq1  TGGTGTATG-CAATGGTGTCAGCGTTTGGAGGCTGATTATGGGATGGATC  1196
      ||| ||||| |||||   ||  ||  |||||||||| ||| |||||||| 
seq2  TGG-GTATGCCAATGTGTTCGACG--TGGAGGCTGAATAT-GGATGGATT  1192

seq1  CCCAGGTATGACAGTCTCTAG  1217
      ||||||  | |||||||||||
seq2  CCCAGG-GTAACAGTCTCTAG  1212

seq1: chr3_101894808_101895586
seq2: B6Ng01-153A08.g_71_849 (reverse)

seq1  CCAACAAACAGTCCCCATTTGATCTGTGTGCCAGTGGAAAGTCTCTAGCT  50
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  CCAACAAACAGTCCCCATTTGATCTGTGTGCCAGTGGAAAGTCTCTA-AT  49

seq1  TAGTGTTATCATAGCCTCCTCAGACAGCAATGCGTCTAACATCATTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTATCATAGCCTCCTCAGACAGCAATGCGTCTAACATCATTGATA  99

seq1  GCTCTCACATGGTTTTGGTGGCTTGAATAACGATACTCTCCTCCCTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCACATGGTTTTGGTGGCTTGAATAACGATACTCTCCTCCCTCCTC  149

seq1  TCCCATGTCTCCTATGTTAGAATGGTTGGCT-CCCAGTGGGTGGAACTGT  199
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCATGTCTCCTATGTTAGAATGGTTGGCTCCCCAGTGGGTGGAACTGT  199

seq1  TTGGGAGGATTAGAAGTGTGACCTTTTTGGAGGAGGTCCAATGTCACTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGATTAGAAGTGTGACCTTTTTGGAGGAGGTCCAATGTCACTGG  249

seq1  GAGTGAGCTTTGAGGTTCAAAAGCCTGTGCCGTTCTAGTTGTCTCTTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGCTTTGAGGTTCAAAAGCCTGTGCCGTTCTAGTTGTCTCTTTCT  299

seq1  GCGTCATGGTTGTTGTCTAGGTATGTAAGCTCCCAATTACTGCTCCAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCATGGTTGTTGTCTAGGTATGTAAGCTCCCAATTACTGCTCCAGCA  349

seq1  CCATGTCTGCCTGTCTGCTGCCATGCTCACCAAGTGATGGCCATATACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTGCCTGTCTGCTGCCATGCTCACCAAGTGATGGCCATATACTT  399

seq1  TACTCCTCTGGAGCCACAAGCCTTAAGTTAAATGCTTTCCTTTGTAAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCTGGAGCCACAAGCCTTAAGTTAAATGCTTTCCTTTGTAAGTT  449

seq1  TCTTTGGCCCTGTGTTTTGTCACAGCAATAGAAATGCATCCAAAACATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCCCTGTGTTTTGTCACAGCAATAGAAATGCATCCAAAACATAT  499

seq1  GAATGTGTTCAAAGAACACCATCACACTTATATGCCCATCCTTGTATGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTTCAAAGAACACCATCACACTTATATGCCCATCCTTGTATGCA  549

seq1  ACAAGGAAGCCAAAGAGCTTGAATTCTCTGTCATGTACTCATTACTTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAGCCAAAGAGCTTGAATTCTCTGTCATGTACTCATTACTTGAT  599

seq1  CAGAGCAAACCACAAAGATTCATCCCCTCACACCACATCTGCAAGATCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAACCACAAAGATTCATCCCCTCACACCACATCTGCAAGATCAA  649

seq1  CCATATAGCTTTAAACACATTGAATTAAAAGTACCAAGTGAAAGCAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAGCTTTAAACACATTGAATTAAAAGTACCAAGTGAAAGCAAATG  699

seq1  AGTAAGAATTCTGTGTACTATAGATGCTATACAAAAAATGATGTCTTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATTCTGTGTACTATAGATGCTATACAAAAAATGATGTCTTATT  749

seq1  TTGTTATGCCATTTGCAGAGGGGGGAATTC  779
      ||||||||||||||||||||| ||||||||
seq2  TTGTTATGCCATTTGCAGAGGAGGGAATTC  779