BAC Information

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BAC

Clone NameB6Ng01-153B04
Chromosome3 (Build37)
Map Location 80,590,175 - 80,779,735
singlet/doubletdoublet
Overlap geneGria2, Glrb, EG626841
Upstream geneTmem144, 1110032E23Rik, EG626797
Downstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153B04.bB6Ng01-153B04.g
ACCDH948485DH948486
length8411,100
definitionDH948485|Mus musculus domesticus DNA, BAC clone: B6Ng01-153B04, 5' end.DH948486|Mus musculus domesticus DNA, BAC clone: B6Ng01-153B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,778,894 - 80,779,735)(80,590,175 - 80,591,290)
sequence
gaattccaaatttgacacactgtactgcagcagatgtaaaataatgtaag
atgaaggactactcatggaggttaaaaatcctccaggaatttgcagatgt
tcattactccaccaactctcctgaactctaggcttgaacatgattgaccc
agggagtggcactattaggaggtacagccttgttgcaggaggtgtggcct
tgttggaggaagtgtgttactatggtgatttgccttggaaacctcctcct
agctccctgaggacagtctgctcctggcttcctttggatgaagatgtaga
ccacttggctctgccagtaccatgcctgcctgaacactgctgtgcttcct
tgcttgatgataattggttgaacctctgaacctgtaagtaagccccgatt
aaacattgtcatttctaagagttgccatggtcatggtgtcacagtaatga
agccctaactaagacatctagtgaaaaacaatgttgagggatgggagaca
aaatgccgaatgtctacattagtaatgaggtcatttcttagtcagcttgt
gattaccacccttgaaatatgggcagttgctgaatatttggatccaaatt
aggtcatgaaacatcacattaaatcttgctaaagaataactaaaatattt
tttttccaagaccaaagtattaaaacccattaacaaaacagaatggggaa
aggcctcaatcaaattagacagaaagagctgagagatgaggggaagggag
agagggtggagtgtacctgaattgaacattcgtagagattttattagcat
tatattcacagactgatcaacataacacttaaattgcattt
gaattctctaagtaataatcagaaatctttaactaaatattctatggctt
ttgccccagtaacaataatatgcttatcagagttaggaaaatttagaact
ttaatttgcaacagaattttataatagattaaatggtgttccaaaattac
tgaaaatgaagataggtatttaattccttgatcaaaataaatattatgaa
ataataaaagttaaatttgcaaacagctttaatgtcaccaactgtttact
tataaaagtacgtgtaaaaacatcttggaaacttttactaatactaatac
taattttactaaagataataataattatctttcaggtataattatgcata
tttttctgctttaagatattactagtttagtagtaataattagttaagga
ataacattttaatcagagctacaaaaggtttttgcaccaattttggaata
atctgtgctggagcgatggctcagcagttaagggcaatggctactcatgc
agagaacctgggtgtgattcccaggacccacgtggcagcgcgcaatcatc
tgttgctccaattctcaataggccccaggcacacaagtggtgcacagaca
tgcacgtacataaaacacccatacacataaaataaacaaatctgaaaaac
gttttaaattgaatcatcacactgagtggtggaagaagtgaaactatgtt
gttcataaaatatatttattttctcaattttttttttgcgttgaaactct
gctgctaaaagcatatttttcctctttcctccaggaaaatcctttctaac
tccatgaaatatgcactcaaatataagagatgactacagtcttgtagaaa
ctgaatataatatattgcttaacttatacctcaaagataaaataactttc
cattttaattccaataaaagtggtccaaaaactcacttccagacccttgc
tcacctcagctttttaacaaggcattaacatcacggttcataaaataagt
ggttaaaatttacaggttccctgaatatgagaccaaacaccacagtcctt
tgccagaacgaaaaaataacctgaagatttaatgtctgcatgaacacttg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80778894_80779735
seq2: B6Ng01-153B04.b_45_884 (reverse)

seq1  AATGCAATTTAAGTGTTATGTTGATACAGTACTGTGAATATACTGCTAAT  50
      ||||||||||||||||||||||||| |||| ||||||||||| |||||||
seq2  AATGCAATTTAAGTGTTATGTTGAT-CAGT-CTGTGAATATAATGCTAAT  48

seq1  AAAATCTCTACGAATGTTCAGTTCAGGTACACTCCACCCTCTCTCCCTTC  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAATCTCTACGAATGTTCAATTCAGGTACACTCCACCCTCTCTCCCTTC  98

seq1  CCCTCATCTCTCAGCTCTTTCTGTCTAATTTGATTGAGGCCTTTCCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCTCTCAGCTCTTTCTGTCTAATTTGATTGAGGCCTTTCCCCAT  148

seq1  TCTGTTTTGTTAATGGGTTTTAATACTTTGGTCTTGGAAAAAAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTGTTAATGGGTTTTAATACTTTGGTCTTGGAAAAAAAATATTT  198

seq1  TAGTTATTCTTTAGCAAGATTTAATGTGATGTTTCATGACCTAATTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTCTTTAGCAAGATTTAATGTGATGTTTCATGACCTAATTTGGA  248

seq1  TCCAAATATTCAGCAACTGCCCATATTTCAAGGGTGGTAATCACAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATTCAGCAACTGCCCATATTTCAAGGGTGGTAATCACAAGCTG  298

seq1  ACTAAGAAATGACCTCATTACTAATGTAGACATTCGGCATTTTGTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAAATGACCTCATTACTAATGTAGACATTCGGCATTTTGTCTCCC  348

seq1  ATCCCTCAACATTGTTTTTCACTAGATGTCTTAGTTAGGGCTTCATTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCAACATTGTTTTTCACTAGATGTCTTAGTTAGGGCTTCATTACT  398

seq1  GTGACACCATGACCATGGCAACTCTTAGAAATGACAATGTTTAATCGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACCATGACCATGGCAACTCTTAGAAATGACAATGTTTAATCGGGG  448

seq1  CTTACTTACAGGTTCAGAGGTTCAACCAATTATCATCAAGCAAGGAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTACAGGTTCAGAGGTTCAACCAATTATCATCAAGCAAGGAAGCA  498

seq1  CAGCAGTGTTCAGGCAGGCATGGTACTGGCAGAGCCAAGTGGTCTACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGTTCAGGCAGGCATGGTACTGGCAGAGCCAAGTGGTCTACATC  548

seq1  TTCATCCAAAGGAAGCCAGGAGCAGACTGTCCTCAGGGAGCTAGGAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAAAGGAAGCCAGGAGCAGACTGTCCTCAGGGAGCTAGGAGGAG  598

seq1  GTTTCCAAGGCAAATCACCATAGTAACACACTTCCTCCAACAAGGCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAAGGCAAATCACCATAGTAACACACTTCCTCCAACAAGGCCACA  648

seq1  CCTCCTGCAACAAGGCTGTACCTCCTAATAGTGCCACTCCCTGGGTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCAACAAGGCTGTACCTCCTAATAGTGCCACTCCCTGGGTCAAT  698

seq1  CATGTTCAAGCCTAGAGTTCAGGAGAGTTGGTGGAGTAATGAACATCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAAGCCTAGAGTTCAGGAGAGTTGGTGGAGTAATGAACATCTGC  748

seq1  AAATTCCTGGAGGATTTTTAACCTCCATGAGTAGTCCTTCATCTTACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTGGAGGATTTTTAACCTCCATGAGTAGTCCTTCATCTTACATT  798

seq1  ATTTTACATCTGCTGCAGTACAGTGTGTCAAATTTGGAATTC  842
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATCTGCTGCAGTACAGTGTGTCAAATTTGGAATTC  840

seq1: chr3_80590175_80591290
seq2: B6Ng01-153B04.g_69_1168

seq1  GAATTCTCTAAGTAATAATCAGAAATCTTTAACTAAATATTCTATGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGTAATAATCAGAAATCTTTAACTAAATATTCTATGGCTT  50

seq1  TTGCCCCAGTAACAATAATATGCTTATCAGAGTTAGGAAAATTTAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCAGTAACAATAATATGCTTATCAGAGTTAGGAAAATTTAGAACT  100

seq1  TTAATTTGCAACAGAATTTTATAATAGATTAAATGGTGTTCCAAAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGCAACAGAATTTTATAATAGATTAAATGGTGTTCCAAAATTAC  150

seq1  TGAAAATGAAGATAGGTATTTAATTCCTTGATCAAAATAAATATTATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAAGATAGGTATTTAATTCCTTGATCAAAATAAATATTATGAA  200

seq1  ATAATAAAAGTTAAATTTGCAAACAGCTTTAATGTCACCAACTGTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAAGTTAAATTTGCAAACAGCTTTAATGTCACCAACTGTTTACT  250

seq1  TATAAAAGTACGTGTAAAAACATCTTGGAAACTTTTACTAATACTAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGTACGTGTAAAAACATCTTGGAAACTTTTACTAATACTAATAC  300

seq1  TAATTTTACTAAAGATAATAATAATTATCTTTCAGGTATAATTATGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACTAAAGATAATAATAATTATCTTTCAGGTATAATTATGCATA  350

seq1  TTTTTCTGCTTTAAGATATTACTAGTTTAGTAGTAATAATTAGTTAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGCTTTAAGATATTACTAGTTTAGTAGTAATAATTAGTTAAGGA  400

seq1  ATAACATTTTAATCAGAGCTACAAAAGGTTTTTGCACCAATTTTGGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTTAATCAGAGCTACAAAAGGTTTTTGCACCAATTTTGGAATA  450

seq1  ATCTGTGCTGGAGCGATGGCTCAGCAGTTAAGGGCAATGGCTACTCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCTGGAGCGATGGCTCAGCAGTTAAGGGCAATGGCTACTCATGC  500

seq1  AGAGAACCTGGGTGTGATTCCCAGGACCCACGTGGCAGCGCGCAATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCTGGGTGTGATTCCCAGGACCCACGTGGCAGCGCGCAATCATC  550

seq1  TGTTGCTCCAATTCTCAATAGGCCCCAGGCACACAAGTGGTGCACAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCCAATTCTCAATAGGCCCCAGGCACACAAGTGGTGCACAGACA  600

seq1  TGCACGTACATAAAACACCCATACACATAAAATAAACAAATCTGAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTACATAAAACACCCATACACATAAAATAAACAAATCTGAAAAAC  650

seq1  GTTTTAAATTGAATCATCACACTGAGTGGTGGAAGAAGTGAAACTATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATTGAATCATCACACTGAGTGGTGGAAGAAGTGAAACTATGTT  700

seq1  GTTCATAAAATATATTTA-TTTCTCAATTTTTTTTTTGCGTTGAAACTCT  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTCATAAAATATATTTATTTTCTCAATTTTTTTTTTGCGTTGAAACTCT  750

seq1  GCTGCTAAAAGCATATTTTTCCTC-TTCCTCCAGGAAAAATCCTTTCTAA  798
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  GCTGCTAAAAGCATATTTTTCCTCTTTCCTCCAGG-AAAATCCTTTCTAA  799

seq1  CTCCATGAAAATATGCACTCAAATATAAAGAGATGACTACAGCCTTGTAG  848
      ||||||| |||||||||||||||||| ||||||||||||||| |||||||
seq2  CTCCATG-AAATATGCACTCAAATAT-AAGAGATGACTACAGTCTTGTAG  847

seq1  AAACTGAATATAATATATTGCTTTAACTTATA-CTCAAAGATAAAAATAA  897
      ||||||||||||||||||||| |||||||||| ||||||||| |||||||
seq2  AAACTGAATATAATATATTGC-TTAACTTATACCTCAAAGAT-AAAATAA  895

seq1  CTTTCCATTTTAATTCCCATAGAAAGGTGGTCCAAAAAACTCACTTCCAG  947
      ||||||||||||||||| ||  ||| ||||||| ||||||||||||||||
seq2  CTTTCCATTTTAATTCCAAT--AAAAGTGGTCC-AAAAACTCACTTCCAG  942

seq1  ACCCTTGCTCACCTTCAGCTTTATCACCAAGGCCATGTAACATTCACAGT  997
      ||||||||||||| |||||||| | | ||||| ||| ||||| |||| | 
seq2  ACCCTTGCTCACC-TCAGCTTT-TTAACAAGG-CAT-TAACA-TCAC-GG  986

seq1  TTCATAAAATAAAGTGGTTAAAAATTTACAGGTTTCCCTG-ATATGAGAC  1046
      |||||||||| |||||||| |||||||||||| ||||||| |||||||| 
seq2  TTCATAAAAT-AAGTGGTT-AAAATTTACAGG-TTCCCTGAATATGAGA-  1032

seq1  CCAAACTACACAGTCC-TTGCCAGGTACGATAAAATAACCTGAAGATTTT  1095
      ||||||  |||||||| |||||| | |||| ||||||||||||||| |||
seq2  CCAAACACCACAGTCCTTTGCCA-GAACGAAAAAATAACCTGAAGA-TTT  1080

seq1  TATTGCTGCATGTAACACTTG  1116
       ||  ||||||| ||||||||
seq2  AATGTCTGCATG-AACACTTG  1100