BAC Information

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BAC

Clone NameB6Ng01-153C05
Chromosome3 (Build37)X (Build37)
Map Location 41,059,192 - 41,059,737150,772,659 - 150,773,727
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153C05.bB6Ng01-153C05.g
ACCDH948532DH948533
length9441,061
definitionDH948532|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C05, 5' end.DH948533|Mus musculus domesticus DNA, BAC clone: B6Ng01-153C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,192 - 41,059,737)(150,772,659 - 150,773,727)
sequence
gaattctttgtttagctctgagccacattttttaatgaggttatttgatt
ttctagagtccaccttcttgagttctttacatacacacacacaaacacac
acacacacacacacacacacacacacacatatatgatattagtctcctat
ctgatttagagtaggtaaataacttttcccaatctgttggtggccttttt
gtggtatttaccgtgccttttgccttacagaagctttgcaattttatgag
gtcccatttgtcgattctcaatcttacagcacaagccattgctgttctat
tcaggaattttccccctgtacccatatcttcgaggcttttccccaccgtg
tcctctataagtttcactgtctctggttttacctggagttccttgatcca
cttagatttgaccttagtacaaggagataggaatggatcaattcgcattc
ttctacatgataaccgccagttgtgccaacaccatttgttgaaaatgctg
tcttttttcatagttgtgtgggttcatttctgggtcttcaatcctattcc
attggtttacttgtctgtcactatactagtatcatgcagtttttatcaca
attgctctgtagtacagctttacattgggcatggtgattccaccagaggt
tcttttatcattgagaagagttttggctatcctaggttttttattattcc
agatgaatttgcagattgccctttcgaattcgttgaagaattgagtttgg
aattttgatggggattgcattgaatctgtaggttgcttatggcaagatag
ccatttttactatattgatcctgccaatccatgagcatgggagatctttc
catcttctgagatcttctttaatttctttcttcagagacttgaagttctt
atcatacaaatctttcacttcctagttagagtcatgccagtatt
gaattcagtaaataagagaaaaagatgaaaatgattttttcctatttata
gtatagatagtgaaacatataataaaataaattagatattactatttgct
attcataaaaagactcattcagataatttctggtttgctggggtacttta
aaactggaaacacggctggccaaaaaagaaggcatcatgtaatacatttg
tttcatttggaagagacaatctttagtgtctttaaattggaggcatagta
ctgataataatagtaaaatatgttctccttatatttttcaactgtgtctg
aatttgtaaccctggacacgtaatgaaacatcaaacacataatctctact
tcttgaatactcattagtctcactttgttctctgaaacctgtattaataa
actgtctgattactagtcagtcagacctgcagaaacaatctaattgctag
tcagttagagatgtgagattccctgaaatataatctactgattctctccc
ttgttttgctgactctttgtctcctctgctgaagtaaaacattggcaccc
tccacatctctctaatttggaaaagatattttattatttctcttggagca
cttgtctactctttggtattgagtggatccatggcattattttggacata
gtagtatttagtctagtactctaactttctgagaacttccgtatacatga
atcatgcccatatcctacccatttttccctacatggaacacttctctgca
tcagaacactttggaaatgactgggaatttcagaaaattccatcgagggg
agtcttcagagcactaagaatacccagtgaactgtttgtctacttttatt
caagaagaactttcagcagtgctaacaggctgcaagtactgctctgtatt
cggtacacattacctgttaagtgtgccacatgatgcatacataaatactt
tggtggtatttttattaaaaacaaacctctaacgtatgtttggttacttg
atttatgcctgaacactttgcctagaatgcacgtttagatgtgaagacct
ttagaaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059192_41059737
seq2: B6Ng01-153C05.b_46_597 (reverse)

seq1  AATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCAC  50
      |||||||||| ||||||||| |||||| ||| ||||||| ||||      
seq2  AATGGAATAGGATTGAAGACCCAGAAATGAACCCACACAACTAT------  44

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCAT  100
                                         |||||||||||||||
seq2  -----------------------------------GAAAAAAGACAGCAT  59

seq1  TTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  150
      ||||||||||||||| ||||||||||||  ||||||||||||||||||||
seq2  TTTCAACAAATGGTGTTGGCACAACTGGCGGTTATCATGTAGAAGAATGC  109

seq1  GAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  159

seq1  AAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||||| |||  |||||||||||||| |||||||||||||||| |  ||
seq2  AAGGAACTCCAGGTAAAACCAGAGACAGTGAAACTTATAGAGGACACGGT  209

seq1  GGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAA  300
      |||||||||||| ||||||||||  ||||||| |||||||||| ||||||
seq2  GGGGAAAAGCCTCGAAGATATGGGTACAGGGGGAAAATTCCTGAATAGAA  259

seq1  CAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATG  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  CAGCAATGGCTTGTGCTGTAAGATTGAGAATCGACAAATGGGACCTCATA  309

seq1  AAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||| ||||||||||||| |||||||||| ||| || ||||  ||||||||
seq2  AAATTGCAAAGCTTCTGTAAGGCAAAAGGCACGGTAAATACCACAAAAAG  359

seq1  G-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  449
      | |||||||||||||||||| | | ||||||||  |||||||||||||| 
seq2  GCCACCAACAGATTGGGAAAAGTTATTTACCTACTCTAAATCAGATAGGA  409

seq1  GACTAATATCCAATA-----------------------------------  464
      ||||||||||  |||                                   
seq2  GACTAATATCATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  459

seq1  -----------TATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAA  503
                 ||| | ||||||||||||||||||| || ||||||||||
seq2  TTGTGTGTGTGTATGTAAAGAACTCAAGAAGGTGGACTCTAGAAAATCAA  509

seq1  ATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  546
      |||||| |||||||||||| |||||||||||||||||||||||
seq2  ATAACCTCATTAAAAAATGTGGCTCAGAGCTAAACAAAGAATT  552

seq1: chrX_150772659_150773727
seq2: B6Ng01-153C05.g_69_1129

seq1  GAATTCAGTAAATAAGAGAAAAAGATGAAAATGATTTTTTCCTATTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAATAAGAGAAAAAGATGAAAATGATTTTTTCCTATTTATA  50

seq1  GTATAGATAGTGAAACATATAATAAAATAAATTAGATATTACTATTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATAGTGAAACATATAATAAAATAAATTAGATATTACTATTTGCT  100

seq1  ATTCATAAAAAGACTCATTCAGATAATTTCTGGTTTGCTGGGGTACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAAAAGACTCATTCAGATAATTTCTGGTTTGCTGGGGTACTTTA  150

seq1  AAACTGGAAACACGGCTGGCCAAAAAAGAAGGCATCATGTAATACATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAAACACGGCTGGCCAAAAAAGAAGGCATCATGTAATACATTTG  200

seq1  TTTCATTTGGAAGAGACAATCTTTAGTGTCTTTAAATTGGAGGCATAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGGAAGAGACAATCTTTAGTGTCTTTAAATTGGAGGCATAGTA  250

seq1  CTGATAATAATAGTAAAATATGTTCTCCTTATATTTTTCAACTGTGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAATAATAGTAAAATATGTTCTCCTTATATTTTTCAACTGTGTCTG  300

seq1  AATTTGTAACCCTGGACACGTAATGAAACATCAAACACATAATCTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAACCCTGGACACGTAATGAAACATCAAACACATAATCTCTACT  350

seq1  TCTTGAATACTCATTAGTCTCACTTTGTTCTCTGAAACCTGTATTAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATACTCATTAGTCTCACTTTGTTCTCTGAAACCTGTATTAATAA  400

seq1  ACTGTCTGATTACTAGTCAGTCAGACCTGCAGAAACAATCTAATTGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGATTACTAGTCAGTCAGACCTGCAGAAACAATCTAATTGCTAG  450

seq1  TCAGTTAGAGATGTGAGATTCCCTGAAATATAATCTACTGATTCTCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGAGATGTGAGATTCCCTGAAATATAATCTACTGATTCTCTCCC  500

seq1  TTGTTTTGCTGACTCTTTGTCTCCTCTGCTGAAGTAAAACATTGGCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCTGACTCTTTGTCTCCTCTGCTGAAGTAAAACATTGGCACCC  550

seq1  TCCACATCTCTCTAATTTGGAAAAGATATTTTATTATTTCTCTTGGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCTCTCTAATTTGGAAAAGATATTTTATTATTTCTCTTGGAGCA  600

seq1  CTTGTCTACTCTTTGGTATTGAGTGGATCCATGGCATTATTTTGGACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTACTCTTTGGTATTGAGTGGATCCATGGCATTATTTTGGACATA  650

seq1  GTAGTATTTAGTCTAGTACTCTAACTTTCTGAGAACTTCCGTATACATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATTTAGTCTAGTACTCTAACTTTCTGAGAACTTCCGTATACATGA  700

seq1  ATCATGCCCATATCCTACCCATTTTTCCCTACATGGAACACTTCTCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCCCATATCCTACCCATTTTTCCCTACATGGAACACTTCTCTGCA  750

seq1  TCAGAACACTTTGGAAATGACTGGGAATTTCAGAAAATTCCATCGAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACACTTTGGAAATGACTGGGAATTTCAGAAAATTCCATCGAGGGG  800

seq1  AGTCTTCAGAGCACTAAGAATACCCAGTGAACTGTTTGTCTACTTTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAGAGCACTAAGAATACCCAGTGAACTGTTTGTCTACTTTTATT  850

seq1  CAAGAAGAACTTTCAGCAGTGCTAACAGGCTGCAAGTACTGCTCTGTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAACTTTCAGCAGTGCTAACAGGCTGCAAGTACTGCTCTGTATT  900

seq1  CGGTACACATTACCTGTTAAGTGTGCCCACATGATGCATACATAAATACT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGGTACACATTACCTGTTAAGTGTG-CCACATGATGCATACATAAATACT  949

seq1  TTGGTGGTATTTTTTATTTAAAAACAAACCTCTAACGTATGTTTGGTTAC  1000
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  TTGGTGGTATTTTT--ATTAAAAACAAACCTCTAACGTATGTTTGGTTAC  997

seq1  TTGATTTATGCCTGAACACTTTGCCTTAGAATGCACAGTTTAGGATGTGA  1050
      ||||||||||||||||||||||||| |||||||||| ||||| |||||||
seq2  TTGATTTATGCCTGAACACTTTGCC-TAGAATGCAC-GTTTA-GATGTGA  1044

seq1  AGACCTTTAAGGAAGGCAG  1069
      |||||||||  ||||||||
seq2  AGACCTTTA--GAAGGCAG  1061