BAC Information

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BAC

Clone NameB6Ng01-153E03
Chromosome3 (Build37)
Map Location 124,480,756 - 124,516,709
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153E03.bB6Ng01-153E03.g
ACCDH948622DH948623
length1,049728
definitionDH948622|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E03, 5' end.DH948623|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,480,756 - 124,481,589)(124,515,990 - 124,516,709)
sequence
gaattcacagatcttggattagaatatgaacaaccattctactaaactag
caaaactcctaatcgcactctaaatatatatttttatacccacagataat
tatagtctggatccctaatcaacaaaccttttgtccaatggagattttta
cagaaaactacaagcaatcataatgcaaagtcatgtagtctcgtcccagt
ggttacatcaagaaaacaatttccctacctaagattcagagaatattaag
gaagaaaggttgcaaatattttaagattaggtcaatcatggagtttttaa
tcagactgcaatgacagaagctacatctataaaagtctcaccaacatgac
agcctaaacacaacccgaaggagataaacatgcacaactggactgaggaa
atcacagtaaacctcagtcaaacataaaataactaaagataaatgctggg
agttaacgaaatagtcttcctcagaagtgaagaaaccaaagagttaaaca
ataccaaatgatcagccctaaaaatatacacataagttacattatgcaga
cagatctagttattatatttaggattatacatgcatgaccatatatgcac
ataacaatcattaacgaacaaaaaggttatgatttgaaagagagtaagca
tagatggataggagggttttaagctggaaaagggaagggagaaatatcat
acttataatctcaaaaaaacattttaaaaggttttatcaatagtattaga
tatacagtatctaaaatttacttacaatataaaggaaatagttaaatcat
ttttaaatatatttatgagtgaagttatcagaaatttgttttgaagccaa
atcacaaatactgggtttcaagtaaatacatcttatctcttcaaaatgat
gaagttagtctttatggtgaaacatgcatcacatacagaaagatgccatt
catgaaaagaaaaaaaatcaattcagaactctcataaacaggtatcatcc
taacataacccttagaatgacaccttggtgatgggacaaccagtgctat
cggaattagataacaacccacataaaggtacaagagagaactagccacaa
aaattgtaaacctgatctccccacagctcagtgacaccagcaacaacaca
ttgaacacacacacatacacacacacacacacacacacacacagagagag
agagagagagagagagagagagagagagagagagagagagagagaagaga
gagagaatatatatatatatattgtttaaaaatcattatcaggttaaaca
catatcagagaaatttaaatttgatatttacatgtttaaatacaaaattg
ggaacatgatcttcgaaagtggataccaagcttcaacacttaagacaagt
tgaagcgttttttgtttgtgtacacccttaattccagcttttggtttgca
gaggccggtagatttctgagttcaagattaggctggtctacagagtgagt
tccaggtctttctgggctacaaagataaaccctgtctcaaaaataacaac
aacaacaataataataataaataaaaaacaagctgaaaaagtaaagttca
ctgcagtaaggtgaacatacttgctttttgctctagtaggcagtgtgaat
ctggaagagctgtgccaaaaaatgagatcaaatgtattcagaacatcaga
caattatacttggacagttacaggagtcacaataaaagatattcaatcac
aaaggacaagccgcatgagaccaaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124480756_124481589
seq2: B6Ng01-153E03.b_266_1094

seq1  TTCCCTACCTAAGATTCAGAGAATATTAAGGAAGAAAGGTTGCAAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCTAAGATTCAGAGAATATTAAGGAAGAAAGGTTGCAAATATT  50

seq1  TTAAGATTAGGTCAATCATGGAGTTTTTAATCAGACTGCAATGACAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTAGGTCAATCATGGAGTTTTTAATCAGACTGCAATGACAGAAG  100

seq1  CTACATCTATAAAAGTCTCACCAACATGACAGCCTAAACACAACCCGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTATAAAAGTCTCACCAACATGACAGCCTAAACACAACCCGAAG  150

seq1  GAGATAAACATGCACAACTGGACTGAGGAAATCACAGTAAACCTCAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAACATGCACAACTGGACTGAGGAAATCACAGTAAACCTCAGTCA  200

seq1  AACATAAAATAACTAAAGATAAATGCTGGGAGTTAACGAAATAGTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAATAACTAAAGATAAATGCTGGGAGTTAACGAAATAGTCTTCC  250

seq1  TCAGAAGAGAAGAAACCAAAGAGTTAAACAATACCAAATGATCAGCCCTA  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTGAAGAAACCAAAGAGTTAAACAATACCAAATGATCAGCCCTA  300

seq1  AAAATATACACATAAGTTACATTATGCAGACAGATCTAGTTATTATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACACATAAGTTACATTATGCAGACAGATCTAGTTATTATATTT  350

seq1  AGGATTATACATGCATGACCATATATGCACATAACAATCATTAACGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATACATGCATGACCATATATGCACATAACAATCATTAACGAACA  400

seq1  AAAAGGTTATGATTTGAAAGAGAGTAAGCATAGATGGATAGGAGGGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTATGATTTGAAAGAGAGTAAGCATAGATGGATAGGAGGGTTTT  450

seq1  AAGCTGGAAAAGGGAAGGGAGAAATATCATACTTATAATCTCAAAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAAAAGGGAAGGGAGAAATATCATACTTATAATCTCAAAAAAAC  500

seq1  ATTTTAAAAGGTTTTATCAATAGTATTAGATATACAGTATCTAAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGGTTTTATCAATAGTATTAGATATACAGTATCTAAAATTTA  550

seq1  CTTACAATATAAAGGAAATAGTTAAATCATTTTTAAATATATTTATGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATATAAAGGAAATAGTTAAATCATTTTTAAATATATTTATGAGT  600

seq1  GAAGTTATCAGAAATTTGTTTTGAAGCCAAATCACAAATACTGGGTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATCAGAAATTTGTTTTGAAGCCAAATCACAAATACTGGGTTTCA  650

seq1  AGTAAATACATCTTATCCCTTCAAAAATGATGAAGTTAGTCTTTATGGGT  700
      ||||||||||||||||| |||| ||||||||||||||||||||||| |||
seq2  AGTAAATACATCTTATCTCTTC-AAAATGATGAAGTTAGTCTTTAT-GGT  698

seq1  GAAACATGCATCACATACAGAAAGATGCCATTCAATGAAAAGAAAAAAAA  750
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  GAAACATGCATCACATACAGAAAGATGCCATTC-ATGAAAAG-AAAAAAA  746

seq1  ATCAAATTCAGAACTCACATAAACA-GTATCATCATAACATAACACTTAA  799
      ||| |||||||||||| |||||||| |||||||| ||||||||| ||| |
seq2  ATC-AATTCAGAACTCTCATAAACAGGTATCATCCTAACATAACCCTT-A  794

seq1  GAATGACCACTTGGT-ATTGGACAATCAGTTGCTAT  834
      |||||||  |||||| || |||||| ||| ||||||
seq2  GAATGACACCTTGGTGATGGGACAACCAG-TGCTAT  829

seq1: chr3_124515990_124516709
seq2: B6Ng01-153E03.g_78_795 (reverse)

seq1  TGGTTTGGTCTCATGCGGCTTGTCC-TTGTGATTGAATATCTTATTAATG  49
      ||||||||||||||||||||||||| ||||||||||||||||| ||| ||
seq2  TGGTTTGGTCTCATGCGGCTTGTCCTTTGTGATTGAATATCTT-TTATTG  49

seq1  TGACTCCTGTTAACTGTCCAAGTATAATTGTCTGATGTTCTGAATACATT  99
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTG-TAACTGTCCAAGTATAATTGTCTGATGTTCTGAATACATT  98

seq1  TGGTCTCATTTTTTGGCACAGCTCTTCCAGATTCACACTGCCTACTAGAG  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCATTTTTTGGCACAGCTCTTCCAGATTCACACTGCCTACTAGAG  148

seq1  CAAAAAGCAATGTATGTTCACCTTACTGCAGTGAACTTTACTTTTTCAGC  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCAA-GTATGTTCACCTTACTGCAGTGAACTTTACTTTTTCAGC  197

seq1  TTGTTTTTTATTTATTATTATTATTGTTGTTGTTGTTATTTTTGAGACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTATTTATTATTATTATTGTTGTTGTTGTTATTTTTGAGACAG  247

seq1  GGTTTATCTTTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGC  299
      |||||||||||||||||| |   | |||||||||||||||||||||||||
seq2  GGTTTATCTTTGTAGCCCAGAAAGACCTGGAACTCACTCTGTAGACCAGC  297

seq1  CTGATCTTGAACTCAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGAA  349
      || |||||||||||||||||||||| ||||||||   ||||  |||||||
seq2  CTAATCTTGAACTCAGAAATCTACCGGCCTCTGCAAACCAAAAGCTGGAA  347

seq1  TTAAGGGTGTGCGCCACCACTGCCCCGCTTCAACTTGTCTTAAGTGTTGA  399
      |||||||||| | | | ||      |||||||||||||||||||||||||
seq2  TTAAGGGTGTACACAAACA-AAAAACGCTTCAACTTGTCTTAAGTGTTGA  396

seq1  AGCTTGGTATCCACTTTCGAAGATCATGTTCCCAATTTTGTATTTAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTATCCACTTTCGAAGATCATGTTCCCAATTTTGTATTTAAACA  446

seq1  TGTAAATATCAAATTTAAATTTCTCTGATATGTGTTTAACCTGATAATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATCAAATTTAAATTTCTCTGATATGTGTTTAACCTGATAATGA  496

seq1  TTTTTAAACAATATATATATATATATTCTCTCTCTCTTCTCTCTCTCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACAATATATATATATATATTCTCTCTCTCTTCTCTCTCTCTCT  546

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGT  596

seq1  GTGTGTGTGTGTGTGTATGTGTGTGTGTTCAATGTGTTGTTGCTGGTGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTATGTGTGTGTGTTCAATGTGTTGTTGCTGGTGTC  646

seq1  ACTGAGCTGTGGGGAGATCAGG-GGACAAGTTTTGTGGCTAGTTCTCTCT  698
      ||||||||||||||||||||||   |||| ||||||||||||||||||||
seq2  ACTGAGCTGTGGGGAGATCAGGTTTACAATTTTTGTGGCTAGTTCTCTCT  696

seq1  TGTACCTTTATGTGGGTTGTTA  720
      ||||||||||||||||||||||
seq2  TGTACCTTTATGTGGGTTGTTA  718