BAC Information

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BAC

Clone NameB6Ng01-153J23
Chromosome3 (Build37)
Map Location 100,137,127 - 100,292,458
singlet/doubletdoublet
Overlap geneLOC195514, 4930431B09Rik
Upstream geneTbx15, M6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
Downstream geneOTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153J23.bB6Ng01-153J23.g
ACCDH948885DH948886
length9851,153
definitionDH948885|Mus musculus domesticus DNA, BAC clone: B6Ng01-153J23, 5' end.DH948886|Mus musculus domesticus DNA, BAC clone: B6Ng01-153J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,291,474 - 100,292,458)(100,137,127 - 100,138,295)
sequence
gaattcagcggctgtgaaacctggttcctcccctttggggatcgaaagtc
gcttactgcgtaggctgaaagccatgtagtcagtccgttgactctgatag
cggtgctgtcggtggcttagaggcgcggctcccggatcgtccgggtcagg
gaacttctttagcgcagtttgcgaggagggtgagagccttctccatagga
agaagttgaggaacctgcagtaccagctggtagcctttacacctagcgcg
ggcaggctggagggcaggagaccgcaaagtcctggagggctggtgaggaa
atgcctagttggtttttcaagaacgcaaaacttccaccagcatcgattgt
catccctaggtggtctaggcctcttttctctcctctcaacctttaatgtg
gagaaaccgttcagagcccggacccaagtcttaagcccctccctcaattg
aggataaagtgcttacaacgaaagatttaatagacttactgattttttaa
gaatagctgtgtatgtaatagtttgaattatgacgagtttggtgttctgg
aaataaagttaagatggtcaaatcctcctaaattaggtccccagctgccc
cgctactctgggaaggagggtgacggtggccattgctggctacaacaact
tccactgtaatttgcttggcaaggcagcgagggagccagaaagctagcca
ggcagccaagagggtggtaggaaggcttaccaagaattctatcttgctgg
aagtcaccagaggtgtgattgtttttccacatcttaccccgcagtcgaag
ggtgtggggtgaggagtaacgaagagccacttttctctcccagctgctac
agctggaccaccagtgggtcctgtcctctgctggccttgttgtggggatg
gagggcttatatcttagtatccggatcggacagctgaaaccttctctcct
gaagaagacactttggtttaggaacttttagatgg
gaattctcagtaagtccataattactgagtgaaaacgagctgaagattgc
tgcttagggcccttccagctttcagatttgtggtctccatgaatggaaga
aaaagtcagagccaggagcttctaagtatttaagcaaattgacaactatc
cctgcctctcctctaggtgggcttgcctcatctctgcctgggctaggaga
aatgtggtacatccactacccggtgtaattctgccacttgtgtcttgctt
caatagctgctcacctgttgtggagctcccttcaaacatctcctcctgga
gagaccctggaatctcaccaaatgcaggagccttagaaagctcagaacaa
tccaccgttcacaaggccaatccctaaagttatgaaaacagtaaatcatg
acaggctagcggagataccaggggactgcctgtgtgttgggcagggcatt
ctggaatgcaactctcatgagtcatcacccatgttgatgtggcccttttg
atgatacagctgctttgcagccaactgggcctcctgtaagtaattccagt
aagttcactgattcactgaggtaggcttgagcagagttgtttctttgatc
tgtagacacttcatctacaatcaaactttgttttcttcagtccatactca
tcccacagcactcagttctaaccaggacccagctcagatgcatgcataac
ctgcccttatcaaactcgaagctcacaactcagagaaagcagccaaacaa
agctcccttttcaaatatcatcaaatgtaacatttaatcttgcttggcct
cagatccagactagagccggtctctagacctcctagacaaagacttgcaa
attttcatgtgcataaagtttcttggggggaggaatttctactaatttgt
cagtccagaggtacatatttgaaaaaagaaagaaagaaaagaaaggcttt
ggatcagcagcatctgaagaagaattttacttccagtaacatggctgtct
ggcaaagaatcacattccaagaccttctaagcctttatgaatctgtctgg
atacagacatgcctgttagtataccttatcccctgctgggaaacagaaca
cttccttgtttccacatttaattccacataaaggaagtttgttgtgaatg
aag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_100291474_100292458
seq2: B6Ng01-153J23.b_45_1029 (reverse)

seq1  CCATCTAAAAGCTTCTTAAACCAAAGTGTC-TCTTCA-GAGAGAAGGTTT  48
      ||||||||||| ||| |||||||||||||| |||||| ||||||||||||
seq2  CCATCTAAAAG-TTCCTAAACCAAAGTGTCTTCTTCAGGAGAGAAGGTTT  49

seq1  CAGCTGTCCGATCCGGATACTAAGATACTAAGCCCTCCATCCCCACAAAC  98
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  CAGCTGTCCGATCCGGATACTAAGATA-TAAGCCCTCCATCCCCAC-AAC  97

seq1  AAGGCCAGCAGAGGACAGGA-CCACTGGTGGTCCAGCTGTAGCAGCTGGG  147
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGGCCAGCAGAGGACAGGACCCACTGGTGGTCCAGCTGTAGCAGCTGGG  147

seq1  AGAGAAAAGTGGCTCTTCGTTACTCCTCACCCCACACCCTTCGACTGCGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGTGGCTCTTCGTTACTCCTCACCCCACACCCTTCGACTGCGG  197

seq1  GGTAAGATGTGGAAAAACAATCACACCTCTGGTGACTTCCAGCAAGATAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGATGTGGAAAAACAATCACACCTCTGGTGACTTCCAGCAAGATAG  247

seq1  AATTCTTGGTAAGCCTTCCTACCACCCTCTTGGCTGCCTGGCTAGCTTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGGTAAGCCTTCCTACCACCCTCTTGGCTGCCTGGCTAGCTTTC  297

seq1  TGGCTCCCTCGCTGCCTTGCCAAGCAAATTACAGTGGAAGTTGTTGTAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCTCGCTGCCTTGCCAAGCAAATTACAGTGGAAGTTGTTGTAGC  347

seq1  CAGCAATGGCCACCGTCACCCTCCTTCCCAGAGTAGCGGGGCAGCTGGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGGCCACCGTCACCCTCCTTCCCAGAGTAGCGGGGCAGCTGGGG  397

seq1  ACCTAATTTAGGAGGATTTGACCATCTTAACTTTATTTCCAGAACACCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATTTAGGAGGATTTGACCATCTTAACTTTATTTCCAGAACACCAA  447

seq1  ACTCGTCATAATTCAAACTATTACATACACAGCTATTCTTAAAAAATCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTCATAATTCAAACTATTACATACACAGCTATTCTTAAAAAATCAG  497

seq1  TAAGTCTATTAAATCTTTCGTTGTAAGCACTTTATCCTCAATTGAGGGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTATTAAATCTTTCGTTGTAAGCACTTTATCCTCAATTGAGGGAG  547

seq1  GGGCTTAAGACTTGGGTCCGGGCTCTGAACGGTTTCTCCACATTAAAGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAAGACTTGGGTCCGGGCTCTGAACGGTTTCTCCACATTAAAGGT  597

seq1  TGAGAGGAGAGAAAAGAGGCCTAGACCACCTAGGGATGACAATCGATGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAGAGAAAAGAGGCCTAGACCACCTAGGGATGACAATCGATGCT  647

seq1  GGTGGAAGTTTTGCGTTCTTGAAAAACCAACTAGGCATTTCCTCACCAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGTTTTGCGTTCTTGAAAAACCAACTAGGCATTTCCTCACCAGC  697

seq1  CCTCCAGGACTTTGCGGTCTCCTGCCCTCCAGCCTGCCCGCGCTAGGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGACTTTGCGGTCTCCTGCCCTCCAGCCTGCCCGCGCTAGGTGT  747

seq1  AAAGGCTACCAGCTGGTACTGCAGGTTCCTCAACTTCTTCCTATGGAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTACCAGCTGGTACTGCAGGTTCCTCAACTTCTTCCTATGGAGAA  797

seq1  GGCTCTCACCCTCCTCGCAAACTGCGCTAAAGAAGTTCCCTGACCCGGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCACCCTCCTCGCAAACTGCGCTAAAGAAGTTCCCTGACCCGGAC  847

seq1  GATCCGGGAGCCGCGCCTCTAAGCCACCGACAGCACCGCTATCAGAGTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCGGGAGCCGCGCCTCTAAGCCACCGACAGCACCGCTATCAGAGTCA  897

seq1  ACGGACTGACTACATGGCTTTCAGCCTACGCAGTAAGCGACTTTCGATCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACTGACTACATGGCTTTCAGCCTACGCAGTAAGCGACTTTCGATCC  947

seq1  CCAAAGGGGAGGAACCAGGTTTCACAGCCGCTGAATTC  985
      ||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGGAGGAACCAGGTTTCACAGCCGCTGAATTC  985

seq1: chr3_100137127_100138295
seq2: B6Ng01-153J23.g_68_1220

seq1  GAATTCTCAGTAAGTCCATAATTACTGAGTGAAAACGAGCTGAAGATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTAAGTCCATAATTACTGAGTGAAAACGAGCTGAAGATTGC  50

seq1  TGCTTAGGGCCCTTCCAGCTTTCAGATTTGTGGTCTCCATGAATGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGGGCCCTTCCAGCTTTCAGATTTGTGGTCTCCATGAATGGAAGA  100

seq1  AAAAGTCAGAGCCAGGAGCTTCTAAGTATTTAAGCAAATTGACAACTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAGAGCCAGGAGCTTCTAAGTATTTAAGCAAATTGACAACTATC  150

seq1  CCTGCCTCTCCTCTAGGTGGGCTTGCCTCATCTCTGCCTGGGCTAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTCCTCTAGGTGGGCTTGCCTCATCTCTGCCTGGGCTAGGAGA  200

seq1  AATGTGGTACATCCACTACCCGGTGTAATTCTGCCACTTGTGTCTTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTACATCCACTACCCGGTGTAATTCTGCCACTTGTGTCTTGCTT  250

seq1  CAATAGCTGCTCACCTGTTGTGGAGCTCCCTTCAAACATCTCCTCCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTGCTCACCTGTTGTGGAGCTCCCTTCAAACATCTCCTCCTGGA  300

seq1  GAGACCCTGGAATCTCACCAAATGCAGGAGCCTTAGAAAGCTCAGAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTGGAATCTCACCAAATGCAGGAGCCTTAGAAAGCTCAGAACAA  350

seq1  TCCACCGTTCACAAGGCCAATCCCTAAAGTTATGAAAACAGTAAATCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCGTTCACAAGGCCAATCCCTAAAGTTATGAAAACAGTAAATCATG  400

seq1  ACAGGCTAGCGGAGATACCAGGGGACTGCCTGTGTGTTGGGCAGGGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAGCGGAGATACCAGGGGACTGCCTGTGTGTTGGGCAGGGCATT  450

seq1  CTGGAATGCAACTCTCATGAGTCATCACCCATGTTGATGTGGCCCTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGCAACTCTCATGAGTCATCACCCATGTTGATGTGGCCCTTTTG  500

seq1  ATGATACAGCTGCTTTGCAGCCAACTGGGCCTCCTGTAAGTAATTCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACAGCTGCTTTGCAGCCAACTGGGCCTCCTGTAAGTAATTCCAGT  550

seq1  AAGTTCACTGATTCACTGAGGTAGGCTTGAGCAGAGTTGTTTCTTTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACTGATTCACTGAGGTAGGCTTGAGCAGAGTTGTTTCTTTGATC  600

seq1  TGTAGACACTTCATCTACAATCAAACTTTGTTTTCTTCAGTCCATACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACACTTCATCTACAATCAAACTTTGTTTTCTTCAGTCCATACTCA  650

seq1  TCCCACAGCACTCAGTTCTAACCAGGACCCAGCTCAGATGCATGCATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGCACTCAGTTCTAACCAGGACCCAGCTCAGATGCATGCATAAC  700

seq1  CTGCCCTTATCAAACTCGAAGCTCACAACTCAGAGAAAGCAGCCAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTATCAAACTCGAAGCTCACAACTCAGAGAAAGCAGCCAAACAA  750

seq1  AGCTCCCTTTTCAAATATCATCAAATGTAACATTTAATCTTGCTTGGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTTTTCAAATATCATCAAATGTAACATTTAATCTTGCTTGGCCT  800

seq1  CAGATCCAGACTAGAGCCGGTCTCTAGACCTCCTAGACAAAGACTTGCAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGATCCAGACTAGAGCCGGTCTCTAGACCTCCTAGACAAAGACTTGC-A  849

seq1  AATTTTCATGTGCATAAAGTTTCTT-GGGGGAGGAATTTCTACTAATTTG  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATTTTCATGTGCATAAAGTTTCTTGGGGGGAGGAATTTCTACTAATTTG  899

seq1  TCAGGTCCAAGAGGTACATATTTGAAAAAAAGAAAAGAAAAGAAAAGAAA  949
      ||| |||| ||||||||||||||| ||||||||||   ||||||||||||
seq2  TCA-GTCC-AGAGGTACATATTTG-AAAAAAGAAA--GAAAGAAAAGAAA  944

seq1  GGCTTTGGATCAGCAGCATCTGAAGAAGAATTTTAC-TCCAGTAACATGG  998
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCTTTGGATCAGCAGCATCTGAAGAAGAATTTTACTTCCAGTAACATGG  994

seq1  CTGCTCTGGCAAAGGATCACATCCAAAGACCTTCTAGGCCTTTATG-ATC  1047
      ||| |||||||||| ||||||| | ||||||||||| ||||||||| |||
seq2  CTG-TCTGGCAAAGAATCACATTCCAAGACCTTCTAAGCCTTTATGAATC  1043

seq1  TGTCTGGAATACAGACATG-CTGTTAGTACATACCTTTAATCCCTCTGGC  1096
      ||||||| ||||||||||| ||||||||  |||||||  ||||| || ||
seq2  TGTCTGG-ATACAGACATGCCTGTTAGT--ATACCTT--ATCCC-CT-GC  1086

seq1  TGGAATACAG-ACACATCCTTGTTACCCACATTTAATCTCAACAATAAAG  1145
      ||| | |||| |||| ||||||||  ||||||||||| || || ||||||
seq2  TGGGAAACAGAACACTTCCTTGTT-TCCACATTTAAT-TCCAC-ATAAAG  1133

seq1  GTAGTTTTGGTTTGTAGAATGAAG  1169
      | |||||    |||| ||||||||
seq2  GAAGTTT---GTTGT-GAATGAAG  1153