BAC Information

Click to search

BAC

Clone NameB6Ng01-153O18
Chromosome3 (Build37)
Map Location 110,543,003 - 110,666,715
singlet/doubletdoublet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153O18.bB6Ng01-153O18.g
ACCDH949102DH949103
length1,036378
definitionDH949102|Mus musculus domesticus DNA, BAC clone: B6Ng01-153O18, 5' end.DH949103|Mus musculus domesticus DNA, BAC clone: B6Ng01-153O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,665,673 - 110,666,715)(110,543,003 - 110,543,386)
sequence
gaattcctaaaagccacagcagttagaatattagcaccttatgaactgat
acttgcttctaaaagtttgcaagccctagataacagagggtctatagcca
actgtcagttctgtcttggtgttctctactggtggagcagatgaagacta
taagcagagcagcagtatcatacttgtacctcaactagtcccacagagag
caatatccatctaacattagggaaggaaaaagaatttcagctttccccaa
gccatgggccattgttttgataaaagtaatcagaataaaaattatctgct
aggagacttagctactccagagaaagtgagagaggaaagaaatcttcggc
ttctgtgggacagtgtgcaagcccccttatctgaggacttgtcaccgcac
caagtgcatgcaagggattatgggtgaaaatgcaaggcatatagaaatat
gaaacacatgataggagaaaaatgccaagaaaaccccacatcttagaaaa
agttgagtaagagaatcacctctgtcaactctccctgactgtacagagtg
ataggcaaaagcagtttgattactggagatatgtgaaatgaaaagaaatg
aaatgaagtggtgcatgcatactatgctggctcattcaataacccggcta
ccctttattcctgatcagaatcacagcttattcctatgtccaaaaacatg
aaacccacataattgtaatgacaaaagtgaactatagtcagccaggcagt
ggtgtcattcccctttaatcccagcactcgggaggcagaggcaggctgat
ttctgagttcgaggccagcctggtctacagagtgagtttccaggacagcc
aggactacacagagaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaga
gagaagagaaatggactatagcaaagagataagtcaagcaacagaacaag
taagaaaaaccacatgaggagtcaaactcttagaaggtaatgaactcttt
attacacctattagtaatctgagggaagccttgtga
attaagaactagaaaggttgagcttattcagcagtaggtctctgatgtgc
caattatatgttatgaataaaacatacctttaaaagagaactgaaggcag
agtgccatagaacccagttcttcatgatctctactatgcccagtgaattc
tttaatgattaatatataggaggaacagcagtctcaattaaactggaccc
ccaagctctctcaaacactgaaccatcaaacagagaacatacatcaactg
atatgaggtccccaacacacatgcagtagaggacttctgggtctctgttc
attcagagatgatgcacctaactctcaagagactggaggccccagggagt
ttagaagttaggttgggtgggggtggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_110665673_110666715
seq2: B6Ng01-153O18.b_48_1083 (reverse)

seq1  TCACAGGGCTT-CCTCAGATTACT-ATAGTTGTAATAAAGAGTTCATTAC  48
      ||||| ||||| |||||||||||| |||| ||||||||||||||||||||
seq2  TCACAAGGCTTCCCTCAGATTACTAATAGGTGTAATAAAGAGTTCATTAC  50

seq1  C-TCTGAGAGTTATGACTCCTCATGTGGTTCTTTCTTACTTGTTCTGTTG  97
      | ||| |||||| ||||||||||||||||| |||||||||||||||||||
seq2  CTTCTAAGAGTT-TGACTCCTCATGTGGTT-TTTCTTACTTGTTCTGTTG  98

seq1  CTTGACTTATCTCTTTGCTATAGTCCATTTCTTCTTCTTCTTCTTTTTTT  147
      |||||||||||||||||||||||||||||||       |||||  | | |
seq2  CTTGACTTATCTCTTTGCTATAGTCCATTTC-------TCTTC--TCTCT  139

seq1  TTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGC  189

seq1  TGTCCTGG-AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  239

seq1  AGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGGGAATGACACCACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGGGAATGACACCACT  289

seq1  GCCTGGCTGACTATAGTTCACTTTTGTCATTACAATTATGTGGGTTTCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTGACTATAGTTCACTTTTGTCATTACAATTATGTGGGTTTCAT  339

seq1  GTTTTTGGACATAGGAATAAGCTGTGATTCTGATCAGGAATAAAGGGTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGACATAGGAATAAGCTGTGATTCTGATCAGGAATAAAGGGTAG  389

seq1  CCGGGTTATTGAATGAGCCAGCATAGTATGCATGCACCACTTCATTTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTTATTGAATGAGCCAGCATAGTATGCATGCACCACTTCATTTCAT  439

seq1  TTCTTTTCATTTCACATATCTCCAGTAATCAAACTGCTTTTGCCTATCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCATTTCACATATCTCCAGTAATCAAACTGCTTTTGCCTATCAC  489

seq1  TCTGTACAGTCAGGGAGAGTTGACAGAGGTGATTCTCTTACTCAACTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAGTCAGGGAGAGTTGACAGAGGTGATTCTCTTACTCAACTTTT  539

seq1  TCTAAGATGTGGGGTTTTCTTGGCATTTTTCTCCTATCATGTGTTTCATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATGTGGGGTTTTCTTGGCATTTTTCTCCTATCATGTGTTTCATA  589

seq1  TTTCTATATGCCTTGCATTTTCACCCATAATCCCTTGCATGCACTTGGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATGCCTTGCATTTTCACCCATAATCCCTTGCATGCACTTGGTG  639

seq1  CGGTGACAAGTCCTCAGATAAGGGGGCTTGCACACTGTCCCACAGAAGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACAAGTCCTCAGATAAGGGGGCTTGCACACTGTCCCACAGAAGCC  689

seq1  GAAGATTTCTTTCCTCTCTCACTTTCTCTGGAGTAGCTAAGTCTCCTAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTCTTTCCTCTCTCACTTTCTCTGGAGTAGCTAAGTCTCCTAGC  739

seq1  AGATAATTTTTATTCTGATTACTTTTATCAAAACAATGGCCCATGGCTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTTTATTCTGATTACTTTTATCAAAACAATGGCCCATGGCTTG  789

seq1  GGGAAAGCTGAAATTCTTTTTCCTTCCCTAATGTTAGATGGATATTGCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGCTGAAATTCTTTTTCCTTCCCTAATGTTAGATGGATATTGCTC  839

seq1  TCTGTGGGACTAGTTGAGGTACAAGTATGATACTGCTGCTCTGCTTATAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGACTAGTTGAGGTACAAGTATGATACTGCTGCTCTGCTTATAG  889

seq1  TCTTCATCTGCTCCACCAGTAGAGAACACCAAGACAGAACTGACAGTTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCTGCTCCACCAGTAGAGAACACCAAGACAGAACTGACAGTTGG  939

seq1  CTATAGACCCTCTGTTATCTAGGGCTTGCAAACTTTTAGAAGCAAGTATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACCCTCTGTTATCTAGGGCTTGCAAACTTTTAGAAGCAAGTATC  989

seq1  AGTTCATAAGGTGCTAATATTCTAACTGCTGTGGCTTTTAGGAATTC  1043
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATAAGGTGCTAATATTCTAACTGCTGTGGCTTTTAGGAATTC  1036

seq1: chr3_110543003_110543386
seq2: B6Ng01-153O18.g_70_453

seq1  GAATTCATTAAGAACTAGAAAGGTTGAGCTTATTCAGCAGTAGGTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGAACTAGAAAGGTTGAGCTTATTCAGCAGTAGGTCTCTG  50

seq1  ATGTGCCAATTATATGTTATGAATAAAACATACCTTTAAAAGAGAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCAATTATATGTTATGAATAAAACATACCTTTAAAAGAGAACTGA  100

seq1  AGGCAGAGTGCCATAGAACCCAGTTCTTCATGATCTCTACTATGCCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGTGCCATAGAACCCAGTTCTTCATGATCTCTACTATGCCCAGT  150

seq1  GAATTCTTTAATGATTAATATATAGGAGGAACAGCAGTCTCAATTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATGATTAATATATAGGAGGAACAGCAGTCTCAATTAAACT  200

seq1  GGACCCCCAAGCTCTCTCAAACACTGAACCATCAAACAGAGAACATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCCAAGCTCTCTCAAACACTGAACCATCAAACAGAGAACATACAT  250

seq1  CAACTGATATGAGGTCCCCAACACACATGCAGTAGAGGACTTCTGGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGATATGAGGTCCCCAACACACATGCAGTAGAGGACTTCTGGGTCT  300

seq1  CTGTTCATTCAGAGATGATGCACCTAACTCTCAAGAGACTGGAGGCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATTCAGAGATGATGCACCTAACTCTCAAGAGACTGGAGGCCCCA  350

seq1  GGGAGTTTAGAAGTTAGGTTGGGTGGGGGTGGAG  384
      ||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTAGAAGTTAGGTTGGGTGGGGGTGGAG  384