BAC Information

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BAC

Clone NameB6Ng01-154A05
Chromosome3 (Build37)
Map Location 37,675,533 - 37,838,057
singlet/doubletdoublet
Overlap gene4930556A17Rik
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367
Downstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154A05.bB6Ng01-154A05.g
ACCDH949169DH949170
length1,0821,160
definitionDH949169|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A05, 5' end.DH949170|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,675,533 - 37,676,618)(37,836,869 - 37,838,057)
sequence
gaattcactgtcctgctgcaaaagcccaaacaggcaaacattctctgcat
gcagtaggtgctgtgtgattaaagaattcaagcatcgttagaccgtaaat
ccatttgtgagaggccctcaatggcaggtaacgtaaaattcccagaataa
acttgattgaattcattcctagcaagctgaaagcatacttcctagatagt
gtgtgacgccgggtctatcttcaacatacacccctggttcacatgtttag
acaatttttgctacaaacctggcagtcatcttcctactgatggggtgaac
gttcacaatggactagatcagttggtgagattttccatgaaaggaaggca
gctacagttctgaaactggaaaatgaacgtaatcatggttaggaccattc
atcgcccctacatgggttctatataaaacaaaagatttaccctataaaat
gagcactgacctacacacttgggacatgactattaggaagcctgtactga
tagcattccatgggataaacgctgaccaaaaccctatgtgcatggtccct
ttgagctccttgtgaccctcagcccaccactttcacttgtttgatgctgg
tagcctgcactttgctttcagcttgccccaaaggcttctctttggaatct
gtcacaccagcaatagtcaaaatggcaccaagggcaccatctaagtagtc
cctttttaaaatgactgcattgaagagtactcttttaggtcttcatgtca
agaatgttaagagtggtaggtttttttcttttttttctctgaatagctgg
cttgtttttatttacacactattatcctgtgactaattggcaacctctcc
atctttctgttttttttttttttttttgcggggggggggggcgagagtgc
tatttcctaatgttagtaattaaaaaaacctatggggatgaaattatgta
tattaattccctggggctaattgtctattttatgctctccccggaaatca
gatcctttttagttgaaatgtttcagctgcctttaacccttgtgggggtg
gctaaagtatccatgtgtcatggaattcatgt
gaattcccatgcactcccaagagcaagtaacctcgtcatctagtaacctc
ttaggttagaaaacacaattcccttggatactttgaaaggttcaagtgct
aggaacaccaaacaagcctgccctttgccttagaacaacattccttaagt
ctcataattacccatgggtccagtatcctgtggtttaaggcccatcatcc
tgtgggtgggctagctggagaatgaccagtcatccagtaataatttttaa
gtgtgatatgagatatgaaagaggcagaaagtatgaaccccaaactgaag
atgcatttaattactgggataaaggaagagaaagatgataaactgaacct
cccagagtacaacccccatgtgcaccttgacagacaaataggaatccact
aggagaaggctggtaacaccatcccttagtaagggaaggccacagagaat
gcagaggcatctgactgtgcttcaaaaagtctggacacagaatctgattt
atagaaactaatttcattcaagagtcttttaaagcaaggaagcatttgta
tagtgccacagagttccaaagacctagagagaggcatttcaaaccagtta
atcgtgagctgcttcaggaattcttcctcaatcattaacaaacactgtct
gcgtcactcatttttggctggtttccagctatcctatcttagaagtcttg
gcccttgaaatccgaagttaagcatttatatctagaacttaaggaccaaa
actatttctgcttctaggtcattaaaatttttagaatactaggccattct
ccagaagcctgtttctgtttggtagactgccatccaggaatgtgctccca
gtcggaattcacaggggaaatgagcctacactcacattaagggaatctat
ttcctctaaaagggaaaatagacagaaatcgtttttccacttgatgaaaa
ttcatcctatcaggagttcatggacagaatgggcaacagaaacttcttgc
atgcagaggcagatgctctggctttggaggaggaaatgctctactgggaa
agctgttcccacaggttgaagctattcttgggagctgcttgctgtctcgg
aaagtaactccttggggctctttgttttgttatgttgctgttctctcctg
aacagtcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37675533_37676618
seq2: B6Ng01-154A05.b_44_1125

seq1  GAATTCACTGTCCTGCTGCAAAAGCCCAAACAGGCAAACATTCTCTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCCTGCTGCAAAAGCCCAAACAGGCAAACATTCTCTGCAT  50

seq1  GCAGTAGGTGCTGTGTGATTAAAGAATTCAAGCATCGTTAGACCGTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGGTGCTGTGTGATTAAAGAATTCAAGCATCGTTAGACCGTAAAT  100

seq1  CCATTTGTGAGAGGCCCTCAATGGCAGGTAACGTAAAATTCCCAGAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTGAGAGGCCCTCAATGGCAGGTAACGTAAAATTCCCAGAATAA  150

seq1  ACTTGATTGAATTCATTCCTAGCAAGCTGAAAGCATACTTCCTAGATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTGAATTCATTCCTAGCAAGCTGAAAGCATACTTCCTAGATAGT  200

seq1  GTGTGACGCCGGGTCTATCTTCAACATACACCCCTGGTTCACATGTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACGCCGGGTCTATCTTCAACATACACCCCTGGTTCACATGTTTAG  250

seq1  ACAATTTTTGCTACAAACCTGGCAGTCATCTTCCTACTGATGGGGTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTTGCTACAAACCTGGCAGTCATCTTCCTACTGATGGGGTGAAC  300

seq1  GTTCACAATGGACTAGATCAGTTGGTGAGATTTTCCATGAAAGGAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAATGGACTAGATCAGTTGGTGAGATTTTCCATGAAAGGAAGGCA  350

seq1  GCTACAGTTCTGAAACTGGAAAATGAACGTAATCATGGTTAGGACCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTTCTGAAACTGGAAAATGAACGTAATCATGGTTAGGACCATTC  400

seq1  ATCGCCCCTACATGGGTTCTATATAAAACAAAAGATTTACCCTATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCCCTACATGGGTTCTATATAAAACAAAAGATTTACCCTATAAAAT  450

seq1  GAGCACTGACCTACACACTTGGGACATGACTATTAGGAAGCCTGTACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGACCTACACACTTGGGACATGACTATTAGGAAGCCTGTACTGA  500

seq1  TAGCATTCCATGGGATAAACGCTGACCAAAACCCTATGTGCATGGTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCCATGGGATAAACGCTGACCAAAACCCTATGTGCATGGTCCCT  550

seq1  TTGAGCTCCTTGTGACCCTCAGCCCACCACTTTCACTTGTTTGATGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCCTTGTGACCCTCAGCCCACCACTTTCACTTGTTTGATGCTGG  600

seq1  TAGCCTGCACTTTGCTTTCAGCTTGCCCCAAAGGCTTCTCTTTGGAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGCACTTTGCTTTCAGCTTGCCCCAAAGGCTTCTCTTTGGAATCT  650

seq1  GTCACACCAGCAATAGTCAAAATGGCACCAAGGGCACCATCTAAGTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACCAGCAATAGTCAAAATGGCACCAAGGGCACCATCTAAGTAGTC  700

seq1  CCTTTTTAAAATGACTGCATTGAAGAGTACTCTTTTAGGTCTTCATGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTAAAATGACTGCATTGAAGAGTACTCTTTTAGGTCTTCATGTCA  750

seq1  AGAATGTTAAGAGTGGTAGGTTTTTTTCTTTTTTTTCTCTGAATAGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTAAGAGTGGTAGGTTTTTTTCTTTTTTTTCTCTGAATAGCTGG  800

seq1  CTTGTTTTTATTTACACACTATTATCCTGTGACTAATTGGCAACCTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTATTTACACACTATTATCCTGTGACTAATTGGCAACCTCTCC  850

seq1  ATCTTTCTG-TTTTTTTTTTTTTTTTTGC-GGGGGGGGGGGCGAGAGTGC  898
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  ATCTTTCTGTTTTTTTTTTTTTTTTTTGCGGGGGGGGGGGGCGAGAGTGC  900

seq1  TATTTCCTAATGTTAGTAATTAAAAAGACCTATGGGGATGAATTCTATGT  948
      |||||||||||||||||||||||||| ||||||||||||||| | |||||
seq2  TATTTCCTAATGTTAGTAATTAAAAAAACCTATGGGGATGAAAT-TATGT  949

seq1  ATATTATTTCCCTGTGGCTATTTGTCTATTTTTATGCTCTCCCCGGAAAT  998
      |||||| ||||||| ||||| ||||||| |||||||||||||||||||||
seq2  ATATTAATTCCCTGGGGCTAATTGTCTA-TTTTATGCTCTCCCCGGAAAT  998

seq1  CAGCATCTTTTTAGTTGTATAATGTTTTCAAGCTGCCTTTAACCCTTTGT  1048
      |||   |||||||||||   |||||||   ||||||||||||||| ||||
seq2  CAGATCCTTTTTAGTTG--AAATGTTT--CAGCTGCCTTTAACCC-TTGT  1043

seq1  GGGGTGGGCTAGAGATACCCATGT-CCAT-GAATTCATGT  1086
      ||||  ||||| || || ||||||  ||| ||||||||||
seq2  GGGGGTGGCTAAAG-TATCCATGTGTCATGGAATTCATGT  1082

seq1: chr3_37836869_37838057
seq2: B6Ng01-154A05.g_67_1226 (reverse)

seq1  GAGGACTGGGGTACAGGAGAGGAGACAAGCCAACATAACAAAACAAAGAG  50
      |||||||   || |||||||| | |     ||||||||||||||||||||
seq2  GAGGACT---GTTCAGGAGAGAACA----GCAACATAACAAAACAAAGAG  43

seq1  CCCCAGGGGAAGTTAACATTTCAGAAGACAGGCAGCAGCTCCCAGGAATA  100
      ||||| ||  |||||   |||| | ||||||  ||||||||||| |||||
seq2  CCCCAAGG--AGTTA--CTTTCCG-AGACAGCAAGCAGCTCCCAAGAATA  88

seq1  GACTTTCAGAACTGTGGGGACCAGCCTTTCCCAGGTAGAGCAATTTCCAT  150
      |   |||| | |||| |||| ||| |||||||| ||||||| |||||| |
seq2  G--CTTCA-ACCTGT-GGGAACAG-CTTTCCCA-GTAGAGC-ATTTCC-T  130

seq1  CCTCCAAAGCCAGAGCATCCTGCCCTCTGGCATGCAAGAAGTTTTCTGTT  200
      |||||||||||||||||| ||| ||||| |||||||||||| |||||| |
seq2  CCTCCAAAGCCAGAGCAT-CTG-CCTCT-GCATGCAAGAAG-TTTCTG-T  175

seq1  TGCCCATTCTGTCCATGAACTCCTGATAGGATGAATTTTTCATCAAGTTG  250
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TGCCCATTCTGTCCATGAACTCCTGATAGGATGAA-TTTTCATCAAG-TG  223

seq1  GAAAAACGATTTCTGTCCTATTTTTCCCTTTTAGAGGAAATAGATTCCCT  300
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  GAAAAACGATTTCTGT-CTA-TTTTCCCTTTTAGAGGAAATAGATTCCCT  271

seq1  TAATGTGAGTGTAGGCTCATTTCCCCTGTGAATTCCGACTGGGAGCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGAGTGTAGGCTCATTTCCCCTGTGAATTCCGACTGGGAGCACAT  321

seq1  TCCTGGATGGCAGTCTACCAAACAGAAACAGGCTTCTGGAGAATGGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATGGCAGTCTACCAAACAGAAACAGGCTTCTGGAGAATGGCCTA  371

seq1  GTATTCTAAAAATTTTAATGACCTAGAAGCAGAAATAGTTTTGGTCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTAAAAATTTTAATGACCTAGAAGCAGAAATAGTTTTGGTCCTTA  421

seq1  AGTTCTAGATATAAATGCTTAACTTCGGATTTCAAGGGCCAAGACTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGATATAAATGCTTAACTTCGGATTTCAAGGGCCAAGACTTCTA  471

seq1  AGATAGGATAGCTGGAAACCAGCCAAAAATGAGTGACGCAGACAGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGATAGCTGGAAACCAGCCAAAAATGAGTGACGCAGACAGTGTTT  521

seq1  GTTAATGATTGAGGAAGAATTCCTGAAGCAGCTCACGATTAACTGGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGATTGAGGAAGAATTCCTGAAGCAGCTCACGATTAACTGGTTTG  571

seq1  AAATGCCTCTCTCTAGGTCTTTGGAACTCTGTGGCACTATACAAATGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTCTCTCTAGGTCTTTGGAACTCTGTGGCACTATACAAATGCTT  621

seq1  CCTTGCTTTAAAAGACTCTTGAATGAAATTAGTTTCTATAAATCAGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTAAAAGACTCTTGAATGAAATTAGTTTCTATAAATCAGATTC  671

seq1  TGTGTCCAGACTTTTTGAAGCACAGTCAGATGCCTCTGCATTCTCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCAGACTTTTTGAAGCACAGTCAGATGCCTCTGCATTCTCTGTGG  721

seq1  CCTTCCCTTACTAAGGGATGGTGTTACCAGCCTTCTCCTAGTGGATTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTTACTAAGGGATGGTGTTACCAGCCTTCTCCTAGTGGATTCCT  771

seq1  ATTTGTCTGTCAAGGTGCACATGGGGGTTGTACTCTGGGAGGTTCAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTGTCAAGGTGCACATGGGGGTTGTACTCTGGGAGGTTCAGTTT  821

seq1  ATCATCTTTCTCTTCCTTTATCCCAGTAATTAAATGCATCTTCAGTTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTTCTCTTCCTTTATCCCAGTAATTAAATGCATCTTCAGTTTGG  871

seq1  GGTTCATACTTTCTGCCTCTTTCATATCTCATATCACACTTAAAAATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATACTTTCTGCCTCTTTCATATCTCATATCACACTTAAAAATTAT  921

seq1  TACTGGATGACTGGTCATTCTCCAGCTAGCCCACCCACAGGATGATGGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATGACTGGTCATTCTCCAGCTAGCCCACCCACAGGATGATGGGC  971

seq1  CTTAAACCACAGGATACTGGACCCATGGGTAATTATGAGACTTAAGGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACCACAGGATACTGGACCCATGGGTAATTATGAGACTTAAGGAAT  1021

seq1  GTTGTTCTAAGGCAAAGGGCAGGCTTGTTTGGTGTTCCTAGCACTTGAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTAAGGCAAAGGGCAGGCTTGTTTGGTGTTCCTAGCACTTGAAC  1071

seq1  CTTTCAAAGTATCCAAGGGAATTGTGTTTTCTAACCTAAGAGGTTACTAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAAGTATCCAAGGGAATTGTGTTTTCTAACCTAAGAGGTTACTAG  1121

seq1  ATGACGAGGTTACTTGCTCTTGGGAGTGCATGGGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||
seq2  ATGACGAGGTTACTTGCTCTTGGGAGTGCATGGGAATTC  1160