BAC Information

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BAC

Clone NameB6Ng01-154A16
Chromosome3 (Build37)
Map Location 83,481,380 - 83,664,717
singlet/doubletdoublet
Overlap geneLOC100042091, Sfrp2, LOC633522, Tlr2
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007
Downstream geneD930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154A16.bB6Ng01-154A16.g
ACCDH949191DH949192
length1,0141,152
definitionDH949191|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A16, 5' end.DH949192|Mus musculus domesticus DNA, BAC clone: B6Ng01-154A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,663,702 - 83,664,717)(83,481,380 - 83,482,534)
sequence
gaattccaggtgcttgctggacatgaccttataaggagagaagaagtctg
gccaccaagctatgtgactgcctcaagggtagcagaggtgggggtcttaa
ggctacgtgtgcccagagcagggaggaagccatctgctcatgccattctc
agaatgagattttccgagtttgaacacatctttacctcacgcttgctcca
gactggtttccctagacgcatggctttctgggctcacaggaccctgaatt
gtggacaggaatgatttccattttccagatatgaaaactgagtcttgtga
tctatttagtcacacagccatcaagatgtaagctcaagtctgctgacagt
gcttacccctatgggtcataaacattgccccaacagtgctgtggaggctg
gattattgggggtgaaggcattgctctgggacccagtagtcagctgacac
agatctggattggaggcacatgggccactcctgaaggctgccaagagtca
gtccaggagaagatttagagcagtgattagctgtaagtccattaaagcca
aagtaaagggtatgtgttttagatctgcagtgaagagttacagcctgcag
gctaagaatgatgatgatagcagcttaccattaccattactgagcttctt
ctgtatactcagccttttggttgggaacacacacacacatatatgtatat
gtgtatgtgtatatatacatatatatatatatatatatatatatatatat
atatatatatatacatatatatgtatatatatattcgatcatgctgggaa
gaaacccatcgtgagtggaaacacatacttacatacataagcatgtgttt
atttatcatcgacttccatcttgaacataaaataataaatgagattgttt
caggctgatccacttggcttaaaacatttcttgttggcaatttgcagatg
aattgtgaaaatctgtgggcacattcctgtaaagcaaactccggcagatg
ggaagacatccaca
gaattcaactcattctcttaatctgcacagctccagtgcctcttttctaa
acaattgttttaatttgaaaaaaaaaaacccacataataaaccaggacca
tgttccatatcccatgtttctttctgtgaccacaaatgtttctaatcgtc
agaaatgcatgtagccacatagcagggcattgtctgctccactactctgc
actcactccgtggacctaattttcttatagagtaggcttcaaagagttat
gccagcctacagctctcactcagaccacagtctgcactccagcagcagca
gctgtttcaacaagacagtcattacactgaaagaaagcagagggtgaaga
catggtcatcaccagtccccggaccatcatcatgagatggtgcaccaggt
gtcctgcagcactggctgaaaagaaccaagaaccatggccttttatattt
aactccattggtattgtcttttcttcctctaactacttcataatctactt
caaacacccttgggatgaagcaagccttgttcgggcagagacaagaagac
ccttcacctactaagacccaggagacaactgaaaggtaggctcattttat
ttgttttgcctaagatatgagacatgaaaagcatttagatattttaacta
gtaaatataatcctataactaaaaagccaaaataaagatattttttaaat
tgcaaattcaggtaaaatacaggtcattcatttttgttaataccaccaat
gaatataatcctaatttctataactaggaaatataaaagaaaaaagtcaa
aatacataacagtgactgtatggaaagtatattgagagcagttatactga
tatattgagagttggaattaagagttcttttcttttcttttttatcttct
taccatggttttctacactaagcacctgttgttacctttatggtctagga
aagaacacatttattctttttttgagaaagagatgctcataaggaaaata
aatcatcccactagtcatgcatgcttaaattattcctggtagcaatttac
taaatctgctatgcactaaattcaattaaacatgtcttcaggtactactt
gaacacgcaataagaaataccaagatgccacaaacaaccttgttcaagat
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83663702_83664717
seq2: B6Ng01-154A16.b_46_1059 (reverse)

seq1  TGTGGATGTCTTCCCATTCTGCCGTGAGTTTGCTTTACAGGAATGTTGCC  50
      |||||||||||||||| ||||||| |||||||||||||||||||| ||||
seq2  TGTGGATGTCTTCCCA-TCTGCCG-GAGTTTGCTTTACAGGAATG-TGCC  47

seq1  CAACAGATTTTGCACAATTCATCTGC-AATTGCCAAACAAG-AATGTTTT  98
      | ||||||||| |||||||||||||| ||||||| |||||| ||||||||
seq2  C-ACAGATTTT-CACAATTCATCTGCAAATTGCC-AACAAGAAATGTTTT  94

seq1  AAGCCAAGTGGACCATGCCTGAAACAATATCATTTATTATTTTAGGTTCA  148
      |||||||||||| || |||||||||||| ||||||||||||||| |||||
seq2  AAGCCAAGTGGATCA-GCCTGAAACAATCTCATTTATTATTTTATGTTCA  143

seq1  AGATGGAAGTCGATGATAATTAAACAATGGCTTAAGTATGAAAGTATGAG  198
      ||||||||||||||||||| ||||||   ||||| ||||| ||||||| |
seq2  AGATGGAAGTCGATGATAAATAAACACATGCTTATGTATGTAAGTATGTG  193

seq1  ATTCCACTC-CGATGGGTTTCCTCCCAGCCTGATCGAATAGGAATATACA  247
       |||||||| ||||||||||| ||||||| ||||||||||   |||||||
seq2  TTTCCACTCACGATGGGTTTCTTCCCAGCATGATCGAATATATATATACA  243

seq1  TATATATG--TATATATATATATATATATATATATATATATATATATATA  295
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTATATATATATATATATATATATATATATATATATATATATA  293

seq1  TATGTATATATACACATACACATATACATATATGTGTGTGTGTGTTCCCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATATACACATACACATATACATATATGTGTGTGTGTGTTCCCA  343

seq1  ACCAAAAGGCTGAGTATACAGAAGAAGCTCAGTAATGGTAATGGTAAGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGGCTGAGTATACAGAAGAAGCTCAGTAATGGTAATGGTAAGCT  393

seq1  GCTATCATCATCATTCTTAGCCTGCAGGCTGTAACTCTTCACTGCAGATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCATCATCATTCTTAGCCTGCAGGCTGTAACTCTTCACTGCAGATC  443

seq1  TAAAACACATACCCTTTACTTTGGCTTTAATGGACTTACAGCTAATCACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACATACCCTTTACTTTGGCTTTAATGGACTTACAGCTAATCACT  493

seq1  GCTCTAAATCTTCTCCTGGACTGACTCTTGGCAGCCTTCAGGAGTGGCCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAATCTTCTCCTGGACTGACTCTTGGCAGCCTTCAGGAGTGGCCC  543

seq1  ATGTGCCTCCAATCCAGATCTGTGTCAGCTGACTACTGGGTCCCAGAGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCTCCAATCCAGATCTGTGTCAGCTGACTACTGGGTCCCAGAGCA  593

seq1  ATGCCTTCACCCCCAATAATCCAGCCTCCACAGCACTGTTGGGGCAATGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCACCCCCAATAATCCAGCCTCCACAGCACTGTTGGGGCAATGT  643

seq1  TTATGACCCATAGGGGTAAGCACTGTCAGCAGACTTGAGCTTACATCTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACCCATAGGGGTAAGCACTGTCAGCAGACTTGAGCTTACATCTTG  693

seq1  ATGGCTGTGTGACTAAATAGATCACAAGACTCAGTTTTCATATCTGGAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTGTGACTAAATAGATCACAAGACTCAGTTTTCATATCTGGAAA  743

seq1  ATGGAAATCATTCCTGTCCACAATTCAGGGTCCTGTGAGCCCAGAAAGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATCATTCCTGTCCACAATTCAGGGTCCTGTGAGCCCAGAAAGCC  793

seq1  ATGCGTCTAGGGAAACCAGTCTGGAGCAAGCGTGAGGTAAAGATGTGTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTCTAGGGAAACCAGTCTGGAGCAAGCGTGAGGTAAAGATGTGTTC  843

seq1  AAACTCGGAAAATCTCATTCTGAGAATGGCATGAGCAGATGGCTTCCTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGGAAAATCTCATTCTGAGAATGGCATGAGCAGATGGCTTCCTCC  893

seq1  CTGCTCTGGGCACACGTAGCCTTAAGACCCCCACCTCTGCTACCCTTGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGGGCACACGTAGCCTTAAGACCCCCACCTCTGCTACCCTTGAG  943

seq1  GCAGTCACATAGCTTGGTGGCCAGACTTCTTCTCTCCTTATAAGGTCATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCACATAGCTTGGTGGCCAGACTTCTTCTCTCCTTATAAGGTCATG  993

seq1  TCCAGCAAGCACCTGGAATTC  1016
      |||||||||||||||||||||
seq2  TCCAGCAAGCACCTGGAATTC  1014

seq1: chr3_83481380_83482534
seq2: B6Ng01-154A16.g_66_1217

seq1  GAATTCAACTCATTCTCTTAATCTGCACAGCTCCAGTGCCTCTTTTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCATTCTCTTAATCTGCACAGCTCCAGTGCCTCTTTTCTAA  50

seq1  ACAATTGTTTTAATTTGAAAAAAAAAAACCCACATAATAAACCAGGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTTTTAATTTGAAAAAAAAAAACCCACATAATAAACCAGGACCA  100

seq1  TGTTCCATATCCCATGTTTCTTTCTGTGACCACAAATGTTTCTAATCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATATCCCATGTTTCTTTCTGTGACCACAAATGTTTCTAATCGTC  150

seq1  AGAAATGCATGTAGCCACATAGCAGGGCATTGTCTGCTCCACTACTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCATGTAGCCACATAGCAGGGCATTGTCTGCTCCACTACTCTGC  200

seq1  ACTCACTCCGTGGACCTAATTTTCTTATAGAGTAGGCTTCAAAGAGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCCGTGGACCTAATTTTCTTATAGAGTAGGCTTCAAAGAGTTAT  250

seq1  GCCAGCCTACAGCTCTCACTCAGACCACAGTCTGCACTCCAGCAGCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTACAGCTCTCACTCAGACCACAGTCTGCACTCCAGCAGCAGCA  300

seq1  GCTGTTTCAACAAGACAGTCATTACACTGAAAGAAAGCAGAGGGTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCAACAAGACAGTCATTACACTGAAAGAAAGCAGAGGGTGAAGA  350

seq1  CATGGTCATCACCAGTCCCCGGACCATCATCATGAGATGGTGCACCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCATCACCAGTCCCCGGACCATCATCATGAGATGGTGCACCAGGT  400

seq1  GTCCTGCAGCACTGGCTGAAAAGAACCAAGAACCATGGCCTTTTATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCAGCACTGGCTGAAAAGAACCAAGAACCATGGCCTTTTATATTT  450

seq1  AACTCCATTGGTATTGTCTTTTCTTCCTCTAACTACTTCATAATCTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATTGGTATTGTCTTTTCTTCCTCTAACTACTTCATAATCTACTT  500

seq1  CAAACACCCTTGGGATGAAGCAAGCCTTGTTCGGGCAGAGACAAGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCCTTGGGATGAAGCAAGCCTTGTTCGGGCAGAGACAAGAAGAC  550

seq1  CCTTCACCTACTAAGACCCAGGAGACAACTGAAAGGTAGGCTCATTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCTACTAAGACCCAGGAGACAACTGAAAGGTAGGCTCATTTTAT  600

seq1  TTGTTTTGCCTAAGATATGAGACATGAAAAGCATTTAGATATTTTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCCTAAGATATGAGACATGAAAAGCATTTAGATATTTTAACTA  650

seq1  GTAAATATAATCCTATAACTAAAAAGCCAAAATAAAGATATTTTTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATAATCCTATAACTAAAAAGCCAAAATAAAGATATTTTTTAAAT  700

seq1  TGCAAATTCAGGTAAAATACAGGTCATTCATTTTTGTTAATACCACCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTCAGGTAAAATACAGGTCATTCATTTTTGTTAATACCACCAAT  750

seq1  GAATATAATCCTAATTTCTATAACTAGGAAATATAAAAGAAAAAAGTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATCCTAATTTCTATAACTAGGAAATATAAAAGAAAAAAGTCAA  800

seq1  AATACATAACAGTGACTGTATGGAAAGTATATTGAGAGCAGTTATACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAACAGTGACTGTATGGAAAGTATATTGAGAGCAGTTATACTGA  850

seq1  TATATTGAGAGTTGGAATTAAGAGTTCTTTTCTTTTCTTTTTTTATCTTC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATATTGAGAGTTGGAATTAAGAGTTCTTTTCTTTTC-TTTTTTATCTTC  899

seq1  TTACCATGGTTTTCTACACTAAGCACCTGTTGTTACCTTTATGGTCTAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATGGTTTTCTACACTAAGCACCTGTTGTTACCTTTATGGTCTAGG  949

seq1  AAAAGAACACATGTATTC-TTTTTTGAGAAAGAGATGCTCATAAAGGAAA  999
       ||||||||||| ||||| ||||||||||||||||||||||| |||||||
seq2  -AAAGAACACATTTATTCTTTTTTTGAGAAAGAGATGCTCAT-AAGGAAA  997

seq1  ATAAATCATCCCACTAGTCATGCATGCCTAAATTATTCCTGGTAGCAATT  1049
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAAATCATCCCACTAGTCATGCATGCTTAAATTATTCCTGGTAGCAATT  1047

seq1  TACTAAATCTGCTATGCACTAAATTCAA-TATACATGTC-TCAGGTACCT  1097
      |||||||||||||||||||||||||||| || ||||||| ||||||| ||
seq2  TACTAAATCTGCTATGCACTAAATTCAATTAAACATGTCTTCAGGTA-CT  1096

seq1  ACTTTGAACACAGCATACAGAATACCAAGATGCACACAACACAACC-TGT  1146
      || ||||||||   |||   ||||||||||||| ||||| |||||| |||
seq2  AC-TTGAACACGCAATAAGAAATACCAAGATGC-CACAA-ACAACCTTGT  1143

seq1  CAAAGATGT  1155
        |||||||
seq2  TCAAGATGT  1152