BAC Information

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BAC

Clone NameB6Ng01-154C10
Chromosome3 (Build37)
Map Location 50,619,576 - 50,743,377
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154C10.bB6Ng01-154C10.g
ACCDH949274DH949275
length1,1771,149
definitionDH949274|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C10, 5' end.DH949275|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,619,576 - 50,620,753)(50,742,201 - 50,743,377)
sequence
gaattctagtccagcctgggttacatgacgaccatgtctagggagattgg
gggtgggaggagcacgtattcacttgcaattcagaggagaacagcaaagg
gaccaggtagcccctctgttatgagctctggggcttctcgaaagatagga
gctgagctttcggctaccagaattggcacgctctcacactcttgcaggtc
tctgtgcagggaccgggagccctggtggctggtccttttagaagagcata
gagataagaggtatctgctcagctgcagcgtcttggctgagccacttaga
cattcccctcggaaatccggtgtaatttgggtttggaataagctagcaca
cgtaagcatcctctggaactccctgctcacagaggagcagatcggtggca
gagaagcacctatcccactcagccacagcagccaccaccccctctctctc
tttttttttttttttcaaatcaaagagcagtgtctgaagggtctaaatat
caacattgtttttccctaaatggcttggatttcctcaggagagagagaga
gaaattaagaggaggctatgcagaaaggatggcagaggggaaatgaaagg
cgtaaggtatgaggagagggtcataggtgtgagttcattctactacatat
gtgccaggaaccgtgcccaaaacagcagtgagcaagacacagaaacgtac
gatctaaacgcttggtgttgacattcttgtgtcctaatttaagctttttc
cctgtgccagactcttacttatattctctttagaccccacaggaggggcc
atgaaacatgggtaacatgcagagaagggtaagcttcccctgaagcacac
agcagcagaaatgcaggtctatggaaaccgtctctagaagtgccccgccc
acagaatcctgttttctccagctactcactttagactccagtctgcagtc
agatgttctcctgaaacctacccaagcaagcaaaggagtcccaaggataa
attagagggaaaggttcctgagcgtgccggcacttttggccgtgctagcg
atatgacttggctgatagcttggtttattttagagcaaggtagactaaag
cagctgcgactgcgatgcttggccagatgatctggtcacggtccttccac
tccatttattttggaaattatatttta
gaattcagtcttggtcattaaaagttgtagaagataaaatgcttatctgc
tcctcacagccacaaggtttggatgcccctactgtgaaaaaggcatcttt
taagtcaatgaaaagaagcattaaaggttgagcttggaatttgtttcagt
tgagttgacaacaattcttcacataagaaggatgctaggctctattcatt
tctttaaaaattgataatgttgtggctgggaggcagagacaggaggattg
ctgcaagttcctcacaggttccaggccagtcaagaccctgtctcaaaaga
gacaaaaaagaagaaagagaaaagttgatgatattgtggcttaacaaagc
caactgctttactaagaaaggctaacatgacaagctcatgaaatgtctca
gagtcaatgctactttaaaattgtttcttgaattcacgattaagatcttt
cccatgaaattgctgaagactaactttggctatgtggtgaaagtcaatga
agttaaattcaatgagatattttatacatccatgttaaatgccagtattg
atatgtgtggttataaacaacatcaaccaccccccaaaacaacaacaaca
acaacaacaacaacaacaacaacaacaacacagttgttgggtgtggtagt
atgctgattctagcacttgggaggttgaggcaggaggataaaaagttctg
gactacgtggacagccaatgtctcaagactagaataattccacaaaacaa
aacaaaacaaaacaaaacaaaacaaagcaaaacaacaacagaacccaagc
aaacaaacaaaaatcaaatgctttcttatttgatatatgtgcatatattt
tataaatttgctattgccactgttgctagaagtttcctctagataagaga
agctcaaaagtcaaaaaaaaaaaaggcagtgtctttcataactctgtagg
aagttaggagtatccaaatctagcctgacactcagactgtctggcagtcc
ccatgcagcgtctttcacaagcagcttttctgtcttgtatgtatgctagt
ttgcccattctaaagcactgcttcaatctctgaattatactcatccgctg
aatttctctgataccaaacactatgtctttggacctaagcagttcccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50619576_50620753
seq2: B6Ng01-154C10.b_46_1222

seq1  GAATTCTAGTCCAGCCTGGGTTACATGA-GACCATGTCTAGGGAGATTGG  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTAGTCCAGCCTGGGTTACATGACGACCATGTCTAGGGAGATTGG  50

seq1  GGGTGGGAGGAGCACGTATTCACTTGCAATTCAGAGGAGAACAGCAAAGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAGGAGCACGTATTCACTTGCAATTCAGAGGAGAACAGCAAAGG  100

seq1  GACCAGGTAGCCCCTCTGTTATGAGCTCTGGGGCTTCTCGAAAGATAGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGTAGCCCCTCTGTTATGAGCTCTGGGGCTTCTCGAAAGATAGGA  150

seq1  GCTGAGCTTTCGGCTACCAGAATTGGCACGCTCTCACACTCTTGCAGGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTTTCGGCTACCAGAATTGGCACGCTCTCACACTCTTGCAGGTC  200

seq1  TCTGTGCAGGGACCGGGAGCCCTGGTGGCTGGTCCTTTTAGAAGAGCATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAGGGACCGGGAGCCCTGGTGGCTGGTCCTTTTAGAAGAGCATA  250

seq1  GAGATAAGAGGTATCTGCTCAGCTGCAGCGTCTTGGCTGAGCCACTTAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGAGGTATCTGCTCAGCTGCAGCGTCTTGGCTGAGCCACTTAGA  300

seq1  CATTCCCCTCGGAAATCCGGTGTAATTTGGGTTTGGAATAAGCTAGCACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCTCGGAAATCCGGTGTAATTTGGGTTTGGAATAAGCTAGCACA  350

seq1  CGTAAGCATCCTCTGGAACTCCCTGCTCACAGAGGAGCAGATCGGTGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGCATCCTCTGGAACTCCCTGCTCACAGAGGAGCAGATCGGTGGCA  400

seq1  GAGAAGCACCTATCCCACTCAGCCACAGCAGCCACCACCCCCTCTCTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCACCTATCCCACTCAGCCACAGCAGCCACCACCCCCTCTCTCTC  450

seq1  TTTTTTTTTTTTTTTCAAATCAAAGAGCAGTGTCTGAAGGGTCTAAATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTCAAATCAAAGAGCAGTGTCTGAAGGGTCTAAATAT  500

seq1  CAACATTGTTTTTCCCTAAATGGCTTGGATTTCCTCAGGAGAGAGAGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGTTTTTCCCTAAATGGCTTGGATTTCCTCAGGAGAGAGAGAGA  550

seq1  GAAATTAAGAGGAGGCTATGCAGAAAGGATGGCAGAGGGGAAATGAAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAGAGGAGGCTATGCAGAAAGGATGGCAGAGGGGAAATGAAAGG  600

seq1  CGTAAGGTATGAGGAGAGGGTCATAGGTGTGAGTTCATTCTACTACATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGGTATGAGGAGAGGGTCATAGGTGTGAGTTCATTCTACTACATAT  650

seq1  GTGCCAGGAACCGTGCCCAAAACAGCAGTGAGCAAGACACAGAAACGTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGAACCGTGCCCAAAACAGCAGTGAGCAAGACACAGAAACGTAC  700

seq1  GATCTAAACGCTTGGTGTTGACATTCTTGTGTCCTAATTTAAGC-TTTTC  748
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATCTAAACGCTTGGTGTTGACATTCTTGTGTCCTAATTTAAGCTTTTTC  750

seq1  CCTGTGCCAGACTCTTACTTATATTCTCTTTAGACCCCACAGGAGGGGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCAGACTCTTACTTATATTCTCTTTAGACCCCACAGGAGGGGCC  800

seq1  ATGAAACATGGGTAACATGCAGAGAAGGGTAAGC-TCCCCTGAAGCACAC  847
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGAAACATGGGTAACATGCAGAGAAGGGTAAGCTTCCCCTGAAGCACAC  850

seq1  AGCAGCAGAAATGCAGGTCTATGGAAACCGTCTCTAGAAGTGCCCCGCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGAAATGCAGGTCTATGGAAACCGTCTCTAGAAGTGCCCCGCCC  900

seq1  ACAGAATCCTGTTTCCTCCAGCTACTCACTTTAGACTCCAGTCTGCAGTC  947
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAGAATCCTGTTTTCTCCAGCTACTCACTTTAGACTCCAGTCTGCAGTC  950

seq1  AGATGTTCTCCTGAAA-CTACCCAAGCAAAGCAAAGGAGTCCCAAGGATA  996
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  AGATGTTCTCCTGAAACCTACCCAAGC-AAGCAAAGGAGTCCCAAGGATA  999

seq1  AA-TAGAGGG-AAGGTTCCTGAGCGTGGCCGGCACTTTTGGCCGTGCTAA  1044
      || ||||||| ||||||||||||||| ||||||||||||||||||||| |
seq2  AATTAGAGGGAAAGGTTCCTGAGCGT-GCCGGCACTTTTGGCCGTGCT-A  1047

seq1  GCGATATGGACTTGGCTGGATAGTCTTGGTTATTTATAGAGCAAGTGAAG  1094
      ||||||| ||||||||| ||||| |||||||  || ||||||||| | ||
seq2  GCGATAT-GACTTGGCT-GATAG-CTTGGTTTATTTTAGAGCAAG-GTAG  1093

seq1  ACTAAAGCAAGCTGCGACTGCAGATGGCTGGGCCAGATGATCT-GTCACG  1143
      |||||||| |||||||||||| ||| ||| ||||||||||||| ||||||
seq2  ACTAAAGC-AGCTGCGACTGC-GAT-GCTTGGCCAGATGATCTGGTCACG  1140

seq1  GTCCCTTCCAACTCCATTTATTTTG----TGATATTTTA  1178
      || |||||| |||||||||||||||    | ||||||||
seq2  GT-CCTTCC-ACTCCATTTATTTTGGAAATTATATTTTA  1177

seq1: chr3_50742201_50743377
seq2: B6Ng01-154C10.g_68_1216 (reverse)

seq1  GTGGGAAATTGCTTAGTGTCAGAAAAGACATAGTGTGTTTGGTATCAGAG  50
      ||||| || ||||||| |||   |||||||||  ||||||||||||||||
seq2  GTGGG-AACTGCTTAG-GTC--CAAAGACATA--GTGTTTGGTATCAGAG  44

seq1  AAAATCAGACGGATGAGTATAAATCAGAGATGGAAGGCAGTTGGCTTTTA  100
      ||| |||| ||||||||||||| |||||||| ||| |||||  |||||  
seq2  AAATTCAG-CGGATGAGTATAATTCAGAGATTGAA-GCAGT--GCTTTAG  90

seq1  GATGGGCAAACTAGCATACATACAAGAACCAGAAAAAGCTGCCTTTGTTG  150
       ||||||||||||||||||||||||||  ||| |||||||||  ||| ||
seq2  AATGGGCAAACTAGCATACATACAAGA--CAG-AAAAGCTGC--TTG-TG  134

seq1  AAAGACGCCTGCATGGGGGACTTGCCAGACAGGTTCTGAGTGTCAGGCTA  200
      ||||||| |||||| |||||| ||||||||||  ||||||||||||||||
seq2  AAAGACG-CTGCAT-GGGGAC-TGCCAGACAG--TCTGAGTGTCAGGCTA  179

seq1  GGATTTGGATACTTCCTAACTTCCTAACAGAGTTTATGGAAAGACACTGC  250
       ||||||||||| |||||||||||| |||||| |||| ||||||||||||
seq2  -GATTTGGATAC-TCCTAACTTCCT-ACAGAG-TTAT-GAAAGACACTGC  224

seq1  CTTTTTTTTTTTTTGACTTTTGAGCTTCTCTTATCTTAGAGGAAACTTCT  300
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  C-TTTTTTTTTTTTGACTTTTGAGCTTCTCTTATC-TAGAGGAAACTTCT  272

seq1  AGCAACAGTGGCAATAGCAAATTTATAAAATATATGCACATATATCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTGGCAATAGCAAATTTATAAAATATATGCACATATATCAAAT  322

seq1  AAGAAAGCATTTGATTTTTGTTTGTTTGCTTGGGTTCTGTTGTTGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCATTTGATTTTTGTTTGTTTGCTTGGGTTCTGTTGTTGTTTTG  372

seq1  CTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTGGAATTATTCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTGGAATTATTCTAGT  422

seq1  CTTGAGACATTGGCTGTCCACGTAGTCCAGAACTTTTTATCCTCCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACATTGGCTGTCCACGTAGTCCAGAACTTTTTATCCTCCTGCCT  472

seq1  CAACCTCCCAAGTGCTAGAATCAGCATACTACCACACCCAACAACTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCCCAAGTGCTAGAATCAGCATACTACCACACCCAACAACTGTGT  522

seq1  TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTGGGGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTGGGGGGTG  572

seq1  GTTGATGTTGTTTATAACCACACATATCAATACTGGCATTTAACATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTGTTTATAACCACACATATCAATACTGGCATTTAACATGGAT  622

seq1  GTATAAAATATCTCATTGAATTTAACTTCATTGACTTTCACCACATAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAATATCTCATTGAATTTAACTTCATTGACTTTCACCACATAGCC  672

seq1  AAAGTTAGTCTTCAGCAATTTCATGGGAAAGATCTTAATCGTGAATTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGTCTTCAGCAATTTCATGGGAAAGATCTTAATCGTGAATTCAA  722

seq1  GAAACAATTTTAAAGTAGCATTGACTCTGAGACATTTCATGAGCTTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATTTTAAAGTAGCATTGACTCTGAGACATTTCATGAGCTTGTCA  772

seq1  TGTTAGCCTTTCTTAGTAAAGCAGTTGGCTTTGTTAAGCCACAATATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCTTTCTTAGTAAAGCAGTTGGCTTTGTTAAGCCACAATATCAT  822

seq1  CAACTTTTCTCTTTCTTCTTTTTTGTCTCTTTTGAGACAGGGTCTTGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTCTCTTTCTTCTTTTTTGTCTCTTTTGAGACAGGGTCTTGACT  872

seq1  GGCCTGGAACCTGTGAGGAACTTGCAGCAATCCTCCTGTCTCTGCCTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAACCTGTGAGGAACTTGCAGCAATCCTCCTGTCTCTGCCTCCC  922

seq1  AGCCACAACATTATCAATTTTTAAAGAAATGAATAGAGCCTAGCATCCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAACATTATCAATTTTTAAAGAAATGAATAGAGCCTAGCATCCTT  972

seq1  CTTATGTGAAGAATTGTTGTCAACTCAACTGAAACAAATTCCAAGCTCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGAAGAATTGTTGTCAACTCAACTGAAACAAATTCCAAGCTCAA  1022

seq1  CCTTTAATGCTTCTTTTCATTGACTTAAAAGATGCCTTTTTCACAGTAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATGCTTCTTTTCATTGACTTAAAAGATGCCTTTTTCACAGTAGG  1072

seq1  GGCATCCAAACCTTGTGGCTGTGAGGAGCAGATAAGCATTTTATCTTCTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCAAACCTTGTGGCTGTGAGGAGCAGATAAGCATTTTATCTTCTA  1122

seq1  CAACTTTTAATGACCAAGACTGAATTC  1177
      |||||||||||||||||||||||||||
seq2  CAACTTTTAATGACCAAGACTGAATTC  1149