BAC Information

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BAC

Clone NameB6Ng01-154D15
Chromosome3 (Build37)
Map Location 56,893,659 - 57,019,590
singlet/doubletdoublet
Overlap geneLOC666585
Upstream geneLOC100040139
Downstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154D15.bB6Ng01-154D15.g
ACCDH949330DH949331
length1,1671,132
definitionDH949330|Mus musculus domesticus DNA, BAC clone: B6Ng01-154D15, 5' end.DH949331|Mus musculus domesticus DNA, BAC clone: B6Ng01-154D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,018,405 - 57,019,590)(56,893,659 - 56,894,804)
sequence
gaattctggatagtagtatgattaattctagataaccaaatttaagaagt
tatacttaaacagtgaattccattacccatacaaataggaattcctttta
ttcctacactataatttacaattttcttatcttcctctgcagattggaca
ggtctactatggtaaaaaggaccaggtagccaagaagactcattgaccac
cacaggaatatccatgtctcctcaatttattcctttgttaatgggcagat
taggaatataagtccaataagtatgatttgccctattacctgaacagtta
ccacagacagcatggcaaaaaaacaagctgtagtgctcagagggttctca
ttgtttgttcttcatcaaccaattttataagctgtccctgtagaaggatt
agctgtctgcctcaaaatttttctttgttgttttgttttagttttgtttg
tttgtttgtttgctttcctagtcccacatacatggacatcaacaaattcc
tcaattatcaataattacaaacgtcacaccaacatggcagctagtcaagc
cacttctatgattcatcctcacactctgggtcctgttccctcaagatcat
tggttccccacaaatctcatctctctgcttacactcctacttctcttctg
cccaaatgattgtcatacattcaccaccaactgactctcctaaattcagc
aattgtccagatatcctcatacatcaggctctctggaaaatctcctaagc
tccactgacctccctttctaaaaacatgctatctgtgtcagcagttaaag
ctgacaaattttagttagttttaatggaacccacaaattttcttctctcg
tagaaacaaaaaatgtaatctcataatttccattatgatgttaagacagc
cttggaataaacaggctgattaaactcagcagttttctatctctaatcca
acacctttcagaagctgttgttcctgttcactaggatttaaaaaaattaa
attagagttaataaggcagatgtgttctactagctgttgtgggctgcatt
gtctggactcagtggagaggagtcctgagtcttgcagagagtttagtgca
ggagggtagattctagaggtccctcacttgctcaaggaatgaagggctgg
ggaagactgtgaagggg
gaattcaagtgtgcacacagaaacacagtactttacttgttcaaatctct
gtgaccctatcagttttcagttcccagaggccttatttctgacccaagag
ctgcaggctgtaatacagaggtaatcagattgcagtaaggagcatggcta
cacatgggaccaggcagcataatagaaacctttagtctttgtggtaagtc
agagttatgcatggaggcccaacccttggaaactgtgatccactaagtac
accagtctaatggtgactgacatttatgacacctttctctgaagtcagag
gaaatgggaagagtgtggaagatctaggatacaaactatttatgtcaaga
tgaaatttgaccaatgtcacctctgctcatactccagtagctacaattca
attcctgtctatacaaactatgagggagattgggaaatgaattctggcta
agttctaggaagggtggcagcgtaatttttcataaatagctatcagcatc
tgctatagaaggaatttaaaaagctaccagaactcttctgggtacatagg
aagacatacctgtcttccttacatatctgttgttgtgtcaacaccgacca
aagcaacttgggggagaaaggattcatttggtttacatatcctaattaca
gtccatcagagggaagcgacagcagagacaaaagcaaagcaggaactgaa
gccatggaggaacattattttcacaacgcatgcacgcgcgcgcgcgcaca
cacacacacacacacacacacacacacatacattttagctttcttgattc
tttaggtttctttctcttcaagctagagaaggagtgaagtcattaaattc
tatgccctttctcattctgtcttctttcatatagtaataaaatcaaaggc
cagaattactgtggttaagaagtcccatgataaacaccagagatatggct
agctaacagctatttaatcaaagaattacagagatccatctgtagcctta
aagagatttccacctaacgtttgttgtgttgaaatgccgtttagaaccct
gtataaacagaggtaccaaattaatagagaaatgtaaaagctattttctt
caatgctctagctgcatcgactctaatcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57018405_57019590
seq2: B6Ng01-154D15.b_47_1213 (reverse)

seq1  CCCCTCTCACAGTCCTCTCCCCAGCCCCTTCACTTCTCCTCTGAGCAGGT  50
      ||||| ||||||||   ||||||| ||||||| | ||    |||||| ||
seq2  CCCCT-TCACAGTC--TTCCCCAG-CCCTTCATTCCT----TGAGCAAGT  42

seq1  GAGGGACCCTCTAGATATCCTACCCTTCCTGGCACTTAAACTCTCTGCAA  100
      |||||| |||||||| || |||||| |||| |||| ||||||||||||||
seq2  GAGGGA-CCTCTAGA-AT-CTACCC-TCCT-GCAC-TAAACTCTCTGCAA  86

seq1  GGCTCAGGACTTCCTCTTCCACTGAGTCCAGACAATGCAGCCCAC-ACAG  149
      | |||||||| ||||| |||||||||||||||||||||||||||| ||||
seq2  GACTCAGGAC-TCCTC-TCCACTGAGTCCAGACAATGCAGCCCACAACAG  134

seq1  CTAGTAGAACACATCCTGCCTTATTAACTCTAATTTTAATTTTTTTTAAA  199
      |||||||||||||| |||||||||||||||||||||  | ||||||||||
seq2  CTAGTAGAACACAT-CTGCCTTATTAACTCTAATTT--AATTTTTTTAAA  181

seq1  TCCTAGTGAAACAGGAACAACAGCTTCTGAAAGGTGTTGGATTAGAGATA  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTG-AACAGGAACAACAGCTTCTGAAAGGTGTTGGATTAGAGATA  230

seq1  GAAAACTGCTGAGTTTAATCAGCCTGTTTATTCCAAGGCTGTCTTAACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGCTGAGTTTAATCAGCCTGTTTATTCCAAGGCTGTCTTAACAT  280

seq1  CATAATGGAAATTATGAGATTACATTTTTTGTTTCTACGAGAGAAGAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGAAATTATGAGATTACATTTTTTGTTTCTACGAGAGAAGAAAA  330

seq1  TTTGTGGGTTCCATTAAAACTAACTAAAATTTGTCAGCCTTAACTGCTGA  399
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGTGGGTTCCATTAAAACTAACTAAAATTTGTCAGCTTTAACTGCTGA  380

seq1  CACAGATAGCATGTTTTTAGAAAGGGAGGTCAGTGGAGCTTAGGAGATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATAGCATGTTTTTAGAAAGGGAGGTCAGTGGAGCTTAGGAGATTT  430

seq1  TCCAGAGAGCCTGATGTATGAGGATATCTGGACAATTGCTGAATTTAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAGCCTGATGTATGAGGATATCTGGACAATTGCTGAATTTAGGA  480

seq1  GAGTCAGTTGGTGGTGAATGTATGACAATCATTTGGGCAGAAGAGAAGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTTGGTGGTGAATGTATGACAATCATTTGGGCAGAAGAGAAGTA  530

seq1  GGAGTGTAAGCAGAGAGATGAGATTTGTGGGGAACCAATGATCTTGAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTAAGCAGAGAGATGAGATTTGTGGGGAACCAATGATCTTGAGGG  580

seq1  AACAGGACCCAGAGTGTGAGGATGAATCATAGAAGTGGCTTGACTAGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACCCAGAGTGTGAGGATGAATCATAGAAGTGGCTTGACTAGCTG  630

seq1  CCATGTTGGTGTGACGTTTGTAATTATTGATAATTGAGGAATTTGTTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGGTGTGACGTTTGTAATTATTGATAATTGAGGAATTTGTTGAT  680

seq1  GTCCATGTATGTGGGACTAGGAAAGCAAACAAACAAACAAACAAAACTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTATGTGGGACTAGGAAAGCAAACAAACAAACAAACAAAACTAA  730

seq1  AACAAAACAACAAAGAAAAATTTTGAGGCAGACAGCTAATCCTTCTACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAACAAAGAAAAATTTTGAGGCAGACAGCTAATCCTTCTACAG  780

seq1  GGACAGCTTATAAAATTGGTTGATGAAGAACAAACAATGAGAACCCTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTTATAAAATTGGTTGATGAAGAACAAACAATGAGAACCCTCTG  830

seq1  AGCACTACAGCTTGTTTTTTTGCCATGCTGTCTGTGGTAACTGTTCAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTACAGCTTGTTTTTTTGCCATGCTGTCTGTGGTAACTGTTCAGGT  880

seq1  AATAGGGCAAATCATACTTATTGGACTTATATTCCTAATCTGCCCATTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGCAAATCATACTTATTGGACTTATATTCCTAATCTGCCCATTAA  930

seq1  CAAAGGAATAAATTGAGGAGACATGGATATTCCTGTGGTGGTCAATGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAATAAATTGAGGAGACATGGATATTCCTGTGGTGGTCAATGAGT  980

seq1  CTTCTTGGCTACCTGGTCCTTTTTACCATAGTAGACCTGTCCAATCTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGCTACCTGGTCCTTTTTACCATAGTAGACCTGTCCAATCTGCA  1030

seq1  GAGGAAGATAAGAAAATTGTAAATTATAGTGTAGGAATAAAAGGAATTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGATAAGAAAATTGTAAATTATAGTGTAGGAATAAAAGGAATTCC  1080

seq1  TATTTGTATGGGTAATGGAATTCACTGTTTAAGTATAACTTCTTAAATTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATGGGTAATGGAATTCACTGTTTAAGTATAACTTCTTAAATTT  1130

seq1  GGTTATCTAGAATTAATCATACTACTATCCAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTAGAATTAATCATACTACTATCCAGAATTC  1167

seq1: chr3_56893659_56894804
seq2: B6Ng01-154D15.g_67_1198

seq1  GAATTCAAGTGTGCACACAGAAACACAGTACTTTACTTGTTCAAATCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGTGCACACAGAAACACAGTACTTTACTTGTTCAAATCTCT  50

seq1  GTGACCCTATCAGTTTTCAGTTCCCAGAGGCCTTATTTCTGACCCAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTATCAGTTTTCAGTTCCCAGAGGCCTTATTTCTGACCCAAGAG  100

seq1  CTGCAGGCTGTAATACAGAGGTAATCAGATTGCAGTAAGGAGCATGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCTGTAATACAGAGGTAATCAGATTGCAGTAAGGAGCATGGCTA  150

seq1  CACATGGGACCAGGCAGCATAATAGAAACCTTTAGTCTTTGTGGTAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGACCAGGCAGCATAATAGAAACCTTTAGTCTTTGTGGTAAGTC  200

seq1  AGAGTTATGCATGGAGGCCCAACCCTTGGAAACTGTGATCCACTAAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATGCATGGAGGCCCAACCCTTGGAAACTGTGATCCACTAAGTAC  250

seq1  ACCAGTCTAATGGTGACTGACATTTATGACACCTTTCTCTGAAGTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTAATGGTGACTGACATTTATGACACCTTTCTCTGAAGTCAGAG  300

seq1  GAAATGGGAAGAGTGTGGAAGATCTAGGATACAAACTATTTATGTCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGAAGAGTGTGGAAGATCTAGGATACAAACTATTTATGTCAAGA  350

seq1  TGAAATTTGACCAATGTCACCTCTGCTCATACTCCAGTAGCTACAATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTGACCAATGTCACCTCTGCTCATACTCCAGTAGCTACAATTCA  400

seq1  ATTCCTGTCTATACAAACTATGAGGGAGATTGGGAAATGAATTCTGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTCTATACAAACTATGAGGGAGATTGGGAAATGAATTCTGGCTA  450

seq1  AGTTCTAGGAAGGGTGGCAGCGTAATTTTTCATAAATAGCTATCAGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGGAAGGGTGGCAGCGTAATTTTTCATAAATAGCTATCAGCATC  500

seq1  TGCTATAGAAGGAATTTAAAAAGCTACCAGAACTCTTCTGGGTACATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAGAAGGAATTTAAAAAGCTACCAGAACTCTTCTGGGTACATAGG  550

seq1  AAGACATACCTGTCTTCCTTACATATCTGTTGTTGTGTCAACACCGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATACCTGTCTTCCTTACATATCTGTTGTTGTGTCAACACCGACCA  600

seq1  AAGCAACTTGGGGGAGAAAGGATTCATTTGGTTTACATATCCTAATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTGGGGGAGAAAGGATTCATTTGGTTTACATATCCTAATTACA  650

seq1  GTCCATCAGAGGGAAGCGACAGCAGAGACAAAAGCAAAGCAGGAACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCAGAGGGAAGCGACAGCAGAGACAAAAGCAAAGCAGGAACTGAA  700

seq1  GCCATGGAGGAACATTATTTTCACAACGCATGCACGCGCGCGCGCGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGAGGAACATTATTTTCACAACGCATGCACGCGCGCGCGCGCACA  750

seq1  CACACACACACACACACACACACACACATACATTTTAGCTTTCTTGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACATACATTTTAGCTTTCTTGATTC  800

seq1  TTTAGGTTTCTTTCTCTTCAAGCTAGAGAAGGAGTGAAGTCATTAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTCTTTCTCTTCAAGCTAGAGAAGGAGTGAAGTCATTAAATTC  850

seq1  TATGCCCTTTCTCATTCTGTCTTCTTTCATATAGTAATAAAATCAAAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTTTCTCATTCTGTCTTCTTTCATATAGTAATAAAATCAAAGGC  900

seq1  CAGAATTACTGTGGTTAAAGAAGGTCCCATGATAAACACCAGAGATATGG  950
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  CAGAATTACTGTGGTT-AAGAA-GTCCCATGATAAACACCAGAGATATGG  948

seq1  CTAGCTAACAGCTATTTAATCAAAGAATTACAGAGATCCATCTGTAGCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAACAGCTATTTAATCAAAGAATTACAGAGATCCATCTGTAGCCT  998

seq1  TAAAAGAGATTTCCACCTAACGTTTGTTGTGTTGAAATGCGGTATAGAAC  1050
      | |||||||||||||||||||||||||||||||||||||| || ||||||
seq2  T-AAAGAGATTTCCACCTAACGTTTGTTGTGTTGAAATGCCGTTTAGAAC  1047

seq1  CCTGTATTAAACAAGGAAGTACCAAATTTAATAAGAGGAAATGTAAAAAG  1100
      |||||| ||||||  || |||||||| ||||| ||| ||||||| |||||
seq2  CCTGTA-TAAACA--GAGGTACCAAA-TTAAT-AGA-GAAATGT-AAAAG  1090

seq1  CTATTTTCTTCAAATGCCTCTAGCTGGCCATCGACTCTAATCACAT  1146
      ||||||||||| |||| |||||||||  ||||||||||||||||||
seq2  CTATTTTCTTC-AATG-CTCTAGCTG--CATCGACTCTAATCACAT  1132