BAC Information

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BAC

Clone NameB6Ng01-154F02
ChromosomeY (Build37)3 (Build37)
Map Location 573,321 - 573,37180,560,445 - 80,561,537
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154F02.bB6Ng01-154F02.g
ACCDH949394DH949395
length5001,081
definitionDH949394|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F02, 5' end.DH949395|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,371)(80,560,445 - 80,561,537)
sequence
gaattcttaggcaaatggatggatttggaagatatcatcccaagtgagtt
aacccaatcacaaaagaacacacatgatgtgcactcactgataagtggcc
cagaaactcagaatgcccaagatataatttgcaaacacatgaaaattaag
aaggaagaccaaagtgtggatacttcgttccttcctagaatggtgaacaa
aatacccatggaaagagttacagagacaaacttcagacctgagacagaag
gaaggaccatccagagactgccccatccagggatccatcccataaacaat
gaccaaacccagatactattgcatatgtcaacaagattttgctgacagga
ccctgatataggtatcttttgtgaggctatgccagcgcctggcaaataca
gaagtggatgctcacagtcatctatttgatggaacacaggacccccccaa
tgaaggagctatagaaagtacccaaggagctgaaggggtctgcaacccta

gaattccagggccaggaagcaggagtgagtgtattggtgagcaggaggag
gggggaaggaatagggcattttcagaggggaaattaagaaagggcatagc
atttgaaatgtaaataaagaaaatatctaattttttaaaaaatgaaaaga
aaaggggatgtttcattttcacttaatttcatcaataacatagaaaactg
tactgaccaacaattttcataaataatggaaccatggttcagttcctaaa
attctcctaaaaatcacatgaattttttaaaaaatgtatgtacaacatac
tactaatatatgctaaagggataaatgtcatttattacaaacttcaaggc
ttgatgcacacataatgcagagagaggggcaccttttttcacagaggtgt
cattccttcattgtaaaacttgtcatgctttaacctcttcattcagagtg
taaaatctgctgtacaaaaaaaattggcaaatagtaactccatttgatac
tacatgtatttcagagtggttttttgttttgtttttgtttttgttttcct
tttctgcttcaataaaaactgaccatgtttcatgaggattttaagagaaa
gccagagatcctgaaagtagcaattcaggagtgaagtgttgctttccaaa
aggtttgaacaccaacaaaaatgaagcttgactgtaagatcctgccattt
attttattaactatttggctctgatcaaatattcatcaagtaataaatag
tacaaaattcctgatttggctattgcagaagaaacaaaaactatgaacat
ttgatttattgttaaagcacacttgcctaatcattaatattttcctgatt
atgttctatagttttataacacaaacactaaagcatcccggtgatagtaa
atagacaagataggcatcccaagttactgaattaggaactgaggttcaag
atcagccgtttcctaccaggtggtcagggaagtagctctggcttctaatt
cccacttggttttatgtctactaagcctttgttaaaggttggaaatgaca
gaacaccctgatcaaatgtactgtaactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573371
seq2: B6Ng01-154F02.b_493_543

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||| |||||||| ||||||||||||||||||| ||||| ||||||| |||
seq2  ATGAAGGAGCTATAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCT  50

seq1  A  51
      |
seq2  A  51

seq1: chr3_80560445_80561537
seq2: B6Ng01-154F02.g_66_1146 (reverse)

seq1  TTCAGTTACAGTACCTTTG-TCAGGGTGTCTTGTCAATTTCCAAACTTCT  49
      |||||||||||||| |||| |||||||||  |||| ||||||||    ||
seq2  TTCAGTTACAGTACATTTGATCAGGGTGTTCTGTC-ATTTCCAA---CCT  46

seq1  TAAACAAAGGGCTCAGTACGACAATAAAACCAAAGTGGGGAATTAGAAGC  99
      | |||||| |||| |||| ||| |||||||| |||| |||||||||||||
seq2  TTAACAAA-GGCTTAGTA-GAC-ATAAAACC-AAGT-GGGAATTAGAAGC  91

seq1  CAGAGCCAACTTTCACTGACCACCTGGTAGGAAAACGGCTGATCCTGAAC  149
      |||||| |   ||| |||||||||||||||| |||||||||||| |||||
seq2  CAGAGCTA--CTTCCCTGACCACCTGGTAGG-AAACGGCTGATCTTGAAC  138

seq1  CTCAGTTCCTAATTCAGTAACTTGGGATGCCTATCTTGTCTATTTACT-T  198
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCAGTTCCTAATTCAGTAACTTGGGATGCCTATCTTGTCTATTTACTAT  188

seq1  CACCGGGATGCTTTAGTGTTTGTGTTATTAAAACTATAGAACATAATCAG  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACCGGGATGCTTTAGTGTTTGTGTTA-TAAAACTATAGAACATAATCAG  237

seq1  GAAAATATTAATGATTAGGCAAGTGTGCTTTTAACAATAAATCAAATGTT  298
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAAATATTAATGATTAGGCAAGTGTGC-TTTAACAATAAATCAAATGTT  286

seq1  CATAGTTTTTGTTTCTTCTGCAATAGCCAAATCAGGAATTTTGTACTATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTTTGTTTCTTCTGCAATAGCCAAATCAGGAATTTTGTACTATT  336

seq1  TATTACTTGATGAATATTTGATCAGAGCCAAATAGTTAATAAAATAAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTGATGAATATTTGATCAGAGCCAAATAGTTAATAAAATAAATG  386

seq1  GCAGGATCTTACAGTCAAGCTTCATTTTTGTTGGTGTTCAAACCTTTTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATCTTACAGTCAAGCTTCATTTTTGTTGGTGTTCAAACCTTTTGG  436

seq1  AAAGCAACACTTCACTCCTGAATTGCTACTTTCAGGATCTCTGGCTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACACTTCACTCCTGAATTGCTACTTTCAGGATCTCTGGCTTTCT  486

seq1  CTTAAAATCCTCATGAAACATGGTCAGTTTTTATTGAAGCAGAAAAGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATCCTCATGAAACATGGTCAGTTTTTATTGAAGCAGAAAAGGAA  536

seq1  AACAAAAACAAAAACAAAACAAAAAACCACTCTGAAATACATGTAGTATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAACAAAACAAAAAACCACTCTGAAATACATGTAGTATC  586

seq1  AAATGGAGTTACTATTTGCCAATTTTTTTTGTACAGCAGATTTTACACTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGTTACTATTTGCCAATTTTTTTTGTACAGCAGATTTTACACTC  636

seq1  TGAATGAAGAGGTTAAAGCATGACAAGTTTTACAATGAAGGAATGACACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAAGAGGTTAAAGCATGACAAGTTTTACAATGAAGGAATGACACC  686

seq1  TCTGTGAAAAAAGGTGCCCCTCTCTCTGCATTATGTGTGCATCAAGCCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAAAAAGGTGCCCCTCTCTCTGCATTATGTGTGCATCAAGCCTT  736

seq1  GAAGTTTGTAATAAATGACATTTATCCCTTTAGCATATATTAGTAGTATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGTAATAAATGACATTTATCCCTTTAGCATATATTAGTAGTATG  786

seq1  TTGTACATACATTTTTTAAAAAATTCATGTGATTTTTAGGAGAATTTTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATACATTTTTTAAAAAATTCATGTGATTTTTAGGAGAATTTTAG  836

seq1  GAACTGAACCATGGTTCCATTATTTATGAAAATTGTTGGTCAGTACAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACCATGGTTCCATTATTTATGAAAATTGTTGGTCAGTACAGTT  886

seq1  TTCTATGTTATTGATGAAATTAAGTGAAAATGAAACATCCCCTTTTCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTTATTGATGAAATTAAGTGAAAATGAAACATCCCCTTTTCTTT  936

seq1  TCATTTTTTAAAAAATTAGATATTTTCTTTATTTACATTTCAAATGCTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTAAAAAATTAGATATTTTCTTTATTTACATTTCAAATGCTAT  986

seq1  GCCCTTTCTTAATTTCCCCTCTGAAAATGCCCTATTCCTTCCCCCCTCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCTTAATTTCCCCTCTGAAAATGCCCTATTCCTTCCCCCCTCCT  1036

seq1  CCTGCTCACCAATACACTCACTCCTGCTTCCTGGCCCTGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCACCAATACACTCACTCCTGCTTCCTGGCCCTGGAATTC  1081