BAC Information

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BAC

Clone NameB6Ng01-154J07
Chromosome3 (Build37)
Map Location 50,018,756 - 50,123,239
singlet/doubletdoublet
Overlap geneLOC100039628, LOC639469
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneSlc7a11, EG621304, LOC100039667, Ccrn4l, Elf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154J07.bB6Ng01-154J07.g
ACCDH949587DH949588
length4571,056
definitionDH949587|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J07, 5' end.DH949588|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,018,756 - 50,019,218)(50,122,166 - 50,123,239)
sequence
acactgcttgataaatatggagggcaggaagcacggatgatctcctgcag
taagcacttcagtttaattagaagtgatttggtttttattccttctaaga
gtcacacccttggaatagcataatcaatagtatatcatatccttttattt
tgtcattgtgttagaaacaaagaataatctgggtcttaaacacaaaccaa
gtgaacacaactagggcacagagagtcacctggttcttatcctcacacag
gtggtgactgtctcttttggccttggctggcacttgacctcacagtcttt
ccagattatctctctctttttttttaaagactctgcaagggaaatgagag
agagaaagagtcagccacccacactgaccattgagctccaggaggatagg
aggaggggtgtgtatgaataagggtcttactaggcagggggcggggtggg
ggggagt
gaattccctaacattgtctttgttgagcaagtttgttatcttcttgccct
gagtaacgcagatttccttcctatttgctcttcttttctgagtactggct
ttggaaccttaatatagtctcaagtttggtaacaacacagcttgaaaaat
tagttcatgtatggagaacaattgaaaatttatcaaaatgtcatacttct
caaagaagaactccaatttatcctggaggcatactattatacgtttgcaa
agtggcatgtgtataatgctattaatttcatgattgcttataagagtaaa
atttagaaaacatttgagttgcattaataacacagtgattaaatacaaca
tgctattatgtatgcttcagaagagaactacatggctgccaggaaatgat
atggaaacagccctctcttaaaggtataattaggtgaaaatggcaatgta
tagaacatgctttatcacatcctatcattttcattaaagcagagggaaaa
tatgcttacctctgcttatttatgtataaatatcttcaggagcaaacaga
caaaattagttgatgagagaggaaactgggttgaattaaaaaatagggca
aaggaaacttttcacaggaaaaatttaatatatgtatatatgtatatata
tatatatgcacatatatatatgtatgtgtatatatgttatatatacacat
atatgtgtgaaagaaacaaataattccaacctggattctttgaaacagga
agttttattttagctgaatcttgggagaggaatatttcaagcagagagga
agaaagaaatgaataccatgagacattgtaggaaacacatgaaaatcttt
ggggtgggggtgggggcagcagagcacaaaatgccacttagcagcaaagt
tcaaagaggtaagaaaagagccatgatacataaacagggacagaaagttc
agaagagatctgatcatagcagcagcacagcaggagtcacgcagctgcag
ctcctctgtgttatctgcgtgatggcatctctctactctctgctcttgcc
ttgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50018756_50019218
seq2: B6Ng01-154J07.b_45_507

seq1  GAATTCACACTGCTTGATAAATATGGAGGGCAGGAAGCACGGATGATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGCTTGATAAATATGGAGGGCAGGAAGCACGGATGATCTC  50

seq1  CTGCAGTAAGCACTTCAGTTTAATTAGAAGTGATTTGGTTTTTATTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTAAGCACTTCAGTTTAATTAGAAGTGATTTGGTTTTTATTCCTT  100

seq1  CTAAGAGTCACACCCTTGGAATAGCATAATCAATAGTATATCATATCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTCACACCCTTGGAATAGCATAATCAATAGTATATCATATCCTT  150

seq1  TTATTTTGTCATTGTGTTAGAAACAAAGAATAATCTGGGTCTTAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTCATTGTGTTAGAAACAAAGAATAATCTGGGTCTTAAACACA  200

seq1  AACCAAGTGAACACAACTAGGGCACAGAGAGTCACCTGGTTCTTATCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTGAACACAACTAGGGCACAGAGAGTCACCTGGTTCTTATCCTC  250

seq1  ACACAGGTGGTGACTGTCTCTTTTGGCCTTGGCTGGCACTTGACCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTGGTGACTGTCTCTTTTGGCCTTGGCTGGCACTTGACCTCACA  300

seq1  GTCTTTCCAGATTATCTCTCTCTTTTTTTTTAAAGACTCTGCAAGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCCAGATTATCTCTCTCTTTTTTTTTAAAGACTCTGCAAGGGAAA  350

seq1  TGAGAGAGAGAAAGAGTCAGCCACCCACACTGACCATTGAGCTCCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGAGAAAGAGTCAGCCACCCACACTGACCATTGAGCTCCAGGAG  400

seq1  GATAGGAGGAGGGGTGTGTATGAATAAGGGTCTTACTAGGCAGGGGGCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGGAGGGGTGTGTATGAATAAGGGTCTTACTAGGCAGGGGGCGG  450

seq1  GGTGGGGGGGAGT  463
      |||||||||||||
seq2  GGTGGGGGGGAGT  463

seq1: chr3_50122166_50123239
seq2: B6Ng01-154J07.g_64_1119 (reverse)

seq1  GCCCAGAGGCAAGGAGCAGAGAGTAGAGAGATGCCATCAACGGCAGATAA  50
      ||||| |||||| ||||||||||||||||||||||||||   ||||||||
seq2  GCCCA-AGGCAA-GAGCAGAGAGTAGAGAGATGCCATCA--CGCAGATAA  46

seq1  CCACAGGAGAGCTGCAGCCTTGCGTGACCTCCCTGCTGTGCTTGCTGCTA  100
       |||||  ||||||||||  ||||||||   |||||||||| ||||||| 
seq2  -CACAGAGGAGCTGCAGC--TGCGTGAC--TCCTGCTGTGC-TGCTGCT-  89

seq1  ATGATCAGATCTTCCTTCTGGAACTTTCTGTTCCCTTGTTTTATGTATCA  150
      ||||||||||||  ||||| |||||||||| |||||   |||||||||||
seq2  ATGATCAGATCT--CTTCT-GAACTTTCTG-TCCCT--GTTTATGTATCA  133

seq1  TGGCTCTTTTCTTACCTCTTTGAACTTTGCTGCTAAGTGGCATTTTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTTTCTTACCTCTTTGAACTTTGCTGCTAAGTGGCATTTTGTGC  183

seq1  TTCTGCTGCCCCCACCCCCACCCCAAAGATTTTCATGTGTTTCCTACAAT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTGCTGCCCCCACCCCCACCCCAAAGATTTTCATGTGTTTCCTACAAT  232

seq1  GTCTCATGGTATTCATTTCTTTCTTCCTCTCTGCTTGAAATATTCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGGTATTCATTTCTTTCTTCCTCTCTGCTTGAAATATTCCTCTC  282

seq1  CCAAGATTCAGCTAAAATAAAACTTCCTGTTTCAAAGAATCCAGGTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTCAGCTAAAATAAAACTTCCTGTTTCAAAGAATCCAGGTTGGA  332

seq1  ATTATTTGTTTCTTTCACACATATATGTGTATATATAACATATATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGTTTCTTTCACACATATATGTGTATATATAACATATATACACA  382

seq1  TACATATATATATGTGCATATATATATATATACATATATACATATATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATATATGTGCATATATATATATATACATATATACATATATTAA  432

seq1  ATTTTTCCTGTGAAAAGTTTCCTTTGCCCTATTTTTTAATTCAACCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTGTGAAAAGTTTCCTTTGCCCTATTTTTTAATTCAACCCAGT  482

seq1  TTCCTCTCTCATCAACTAATTTTGTCTGTTTGCTCCTGAAGATATTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTCATCAACTAATTTTGTCTGTTTGCTCCTGAAGATATTTATA  532

seq1  CATAAATAAGCAGAGGTAAGCATATTTTCCCTCTGCTTTAATGAAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAAGCAGAGGTAAGCATATTTTCCCTCTGCTTTAATGAAAATGA  582

seq1  TAGGATGTGATAAAGCATGTTCTATACATTGCCATTTTCACCTAATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTGATAAAGCATGTTCTATACATTGCCATTTTCACCTAATTATA  632

seq1  CCTTTAAGAGAGGGCTGTTTCCATATCATTTCCTGGCAGCCATGTAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGAGAGGGCTGTTTCCATATCATTTCCTGGCAGCCATGTAGTTC  682

seq1  TCTTCTGAAGCATACATAATAGCATGTTGTATTTAATCACTGTGTTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAAGCATACATAATAGCATGTTGTATTTAATCACTGTGTTATTA  732

seq1  ATGCAACTCAAATGTTTTCTAAATTTTACTCTTATAAGCAATCATGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACTCAAATGTTTTCTAAATTTTACTCTTATAAGCAATCATGAAAT  782

seq1  TAATAGCATTATACACATGCCACTTTGCAAACGTATAATAGTATGCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCATTATACACATGCCACTTTGCAAACGTATAATAGTATGCCTCC  832

seq1  AGGATAAATTGGAGTTCTTCTTTGAGAAGTATGACATTTTGATAAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAATTGGAGTTCTTCTTTGAGAAGTATGACATTTTGATAAATTTT  882

seq1  CAATTGTTCTCCATACATGAACTAATTTTTCAAGCTGTGTTGTTACCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTCTCCATACATGAACTAATTTTTCAAGCTGTGTTGTTACCAAA  932

seq1  CTTGAGACTATATTAAGGTTCCAAAGCCAGTACTCAGAAAAGAAGAGCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACTATATTAAGGTTCCAAAGCCAGTACTCAGAAAAGAAGAGCAA  982

seq1  ATAGGAAGGAAATCTGCGTTACTCAGGGCAAGAAGATAACAAACTTGCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGGAAATCTGCGTTACTCAGGGCAAGAAGATAACAAACTTGCTC  1032

seq1  AACAAAGACAATGTTAGGGAATTC  1074
      ||||||||||||||||||||||||
seq2  AACAAAGACAATGTTAGGGAATTC  1056