BAC Information

Click to search

BAC

Clone NameB6Ng01-154K07
Chromosome3 (Build37)
Map Location 156,037,625 - 156,038,575
singlet/doubletsinglet
Overlap genenone
Upstream geneScp2-ps1, EG668902, LOC624519, LOC100040901
Downstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154K07.bB6Ng01-154K07.g
ACCDH949635DH949636
length1,146949
definitionDH949635|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K07, 5' end.DH949636|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctatttgtctctctggttctggatcacctcacgttagatgactt
tttagagtttcatccatttacctccaaattttgtgattttatttttttcc
tcaatggagtaattctccactctgtaaatgtaatatattttaaaattcat
acattgaaggacatctaggttgttttcagtttctgactcttatgaatata
acaaaaaatgaagatgaatgagcaactgtctctgtagtaggatgaggtat
cctttgggtatatgcctgagaatggcatggcttccatcttccagagaaac
agccacacatgttttcagagtagctgtaccagtttgtactcccaccagca
atggaggggagctcccccattccctgttcccaccagcctgggctgttact
tgttgtgtctattatgatcattctgacaagtgttaaattaaggatcaaag
aagttttgaattgcatttcctgttgaagattgccttaagtgtttctcagc
tgtttttcctcttttaagaaatctctattgatatctggtccccatttgtg
aaattgggttatttgttttcttagtacttaacttttgatattatcctact
atcagatgtatagttggtacaaagtattttcctatgtcaatgagttcaag
gctattccctactttctcggctatctgagtcagtatagcttgctctatct
tgatgtttttggtcattgaaatttttagtttggtgcaagatggtatgtaa
tgatatatttggattcctctaaattcagtcatccatttgaccaaaccttt
tgttaaagatgctgttttgttgtcgtttttgttagttttgtttttccctc
agtgtgtatgtcttacgtatttaccaaaattaaagctgtgtataggtatg
tggatttctgtctagtgttttcagcttgatttcattatcatgtgtctaat
ttttgtgtctaattgatcatagtacatggtgtttggataatgtttcttga
atttggttgcagatattttattgatattttttagcatcttattactcaca
agggaatttgactgtaatccttctttttgcatattatgtggttagttatc
aggtaactggagcctcatggaatgaattgcccatggcttcccttct
gaattcacagaaagaactctcatgttgctcagtcatctcccataaccatg
tgacctgttagacaatatatgaagatgaaggtcaccatagagctccctct
aaagaattctattctcacgtttgaggtagggaatttaatcctggatttga
aattagactatgaatgaaaaactgcttcacttccatctaatgctgagaat
ggccatggtagtaaacatggtgcctggaatggggcaaacttcacagtagt
caactgtactttctgtttaatgctggagcaaaattcaagtcttcccacct
cccgaatgttcactatgtccatcttactgccaaggatgtagtcacactgt
catggacacttaattcagactgtggagctcacatttctgctcagctttca
gggtgctcctaaatgaccaacacatcatccagggctccccttgttctcaa
caattttgttttttttttttttttgttttgtttttttgtttttgttttgt
tttgtttttgttttttagatattttctttatttacatttcaaatgttatc
acctttcctggtttcccctccaaaaaccccctatcctctcacccctccac
ctgttcatcaatccacccactcctgcttcctggccctggtattcctctac
actggggcatagagccttcacaggaccaagggcctctcctcccattgatg
accgactaggccatcttctgctacatatgcagctagagccatgagtccca
ccatgtgtattgtttggttggtggattagtccctgggatctctggaggta
ctggttggttcatattgttgttccccctatggggctgcaaaccccttcag
ctccttgggtcctttttctagctcctccatttgggatcctgtgcttagtc
caatggatggctgtgagcatccacttctgttttttcagcactggcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156037625_156038575
seq2: B6Ng01-154K07.g_68_1016

seq1  GAATTCACAGAAAGAACTCTCATGTTGCTCAGTCATCTCCCATAACCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAAGAACTCTCATGTTGCTCAGTCATCTCCCATAACCATG  50

seq1  TGACCTGTTAGACAATATATGAAGATGAAGGTCACCATAGAGCTCCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTTAGACAATATATGAAGATGAAGGTCACCATAGAGCTCCCTCT  100

seq1  AAAGAATTCTATTCTCACGTTTGAGGTAGGGAATTTAATCCTGGATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCTATTCTCACGTTTGAGGTAGGGAATTTAATCCTGGATTTGA  150

seq1  AATTAGACTATGAATGAAAAACTGCTTCACTTCCATCTAATGCTGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGACTATGAATGAAAAACTGCTTCACTTCCATCTAATGCTGAGAAT  200

seq1  GGCCATGGTAGTAAACATGGTGCCTGGAATGGGGCAAACTTCACAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGTAGTAAACATGGTGCCTGGAATGGGGCAAACTTCACAGTAGT  250

seq1  CAACTGTACTTTCTGTTTAATGCTGGAGCAAAATTCAAGTCTTCCCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTACTTTCTGTTTAATGCTGGAGCAAAATTCAAGTCTTCCCACCT  300

seq1  CCCGAATGTTCACTATGTCCATCTTACTGCCAAGGATGTAGTCACACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAATGTTCACTATGTCCATCTTACTGCCAAGGATGTAGTCACACTGT  350

seq1  CATGGACACTTAATTCAGACTGTGGAGCTCACATTTCTGCTCAGCTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACACTTAATTCAGACTGTGGAGCTCACATTTCTGCTCAGCTTTCA  400

seq1  GGGTGCTCCTAAATGACCAACACATCATCCAGGGCTCCCCTTGTTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTCCTAAATGACCAACACATCATCCAGGGCTCCCCTTGTTCTCAA  450

seq1  CAATTTTGTTTTTTTTTTTTTTTTGTTTTGTTTTTTTGTTTTTGTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTTTTTTTTTTTTTTTTGTTTTGTTTTTTTGTTTTTGTTTTGT  500

seq1  TTTGTTTTTGTTTTTTAGATATTTTCTTTATTTACATTTCAAATGTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTTAGATATTTTCTTTATTTACATTTCAAATGTTATC  550

seq1  ACCTTTCCTGGTTTCCCCTCCAAAAACCCCCTATCCTCTCACCCCTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCTGGTTTCCCCTCCAAAAACCCCCTATCCTCTCACCCCTCCAC  600

seq1  CTGTTCATCAATCCACCCACTCCTGCTTCCTGGCCCTGGTATTCCTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCAATCCACCCACTCCTGCTTCCTGGCCCTGGTATTCCTCTAC  650

seq1  ACTGGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCCATTGATG  700

seq1  ACCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGCCATGAGTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGCCATGAGTCCCA  750

seq1  CCATGTGTATTGTTTGGTTGGTGGATTAGTCCCTGGGATCTCTGGAGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTATTGTTTGGTTGGTGGATTAGTCCCTGGGATCTCTGGAGGTA  800

seq1  CTGGTTGGTTCATATTGTTGTTCCCCCTATGGGGCTGCAAACCCCTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGTTCATATTGTTGTTCCCCCTATGGGGCTGCAAACCCCTTCAG  850

seq1  CTCCTTGGGTCCTTTTTCTAGCTCCTCCATTTGGGATCCTGTGCTTAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGGTCCTTTTTCTAGCTCCTCCATTTGGGATCCTGTGCTTAGTC  900

seq1  CAATGGATGGCTGTGAGCATCCACTTCTGTTTTTTTCAGGCACTGGCAGA  950
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  CAATGGATGGCTGTGAGCATCCACTTCTG-TTTTTTCA-GCACTGGCAGA  948

seq1  G  951
      |
seq2  G  949