BAC Information

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BAC

Clone NameB6Ng01-154K11
Chromosome3 (Build37)
Map Location 156,953,268 - 157,157,201
singlet/doubletdoublet
Overlap geneNegr1, LOC546818
Upstream gene4930570G19Rik, LOC100041152, LOC668853
Downstream geneZranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154K11.bB6Ng01-154K11.g
ACCDH949641DH949642
length1,1541,134
definitionDH949641|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K11, 5' end.DH949642|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,953,268 - 156,954,444)(157,156,061 - 157,157,201)
sequence
gaattccataaaaatattaattcatctagacaatatgatattatgaaagt
tcatcttcatattgactgcttcatatggactgcttcccagaaggtaatca
caccatgctatgggcagtgggggtctccccaagccaaatcatacaattcc
agataaatgaggaacacagtgatggtaagcatgagacaggagcatgacag
caaagttctccagggagcacccattgtagctgtgcaaaacagtagaccgt
cttcaggaacctcatttgcccactataacttctcttgcatagcatccacc
gttactcatgatctcttactgcctgcacattgcttaatggttcctgttgt
gtccaaaagaataatttttttttcaaaactgtccagccaagtcatttcac
cttttggaatcaacacattcaagctttgaccaagaaggcactaactggga
tcagttatctcatggttacctggccttattattcttttgaaatgtggtat
ggaattattattctttcatgtcaatcagaattgtaagtttagataaagac
cagttcatgacagactcttaactaaggaccatagtgtctgcctcaagaca
ctataaaattctcctgcgattatataattcttcaacctgaaaaaaaaaaa
aagagaaaaaagaaattacagacgcacaagtttttctttattaccttgaa
agtagtttttcatccctcttttcaatgggatgaggagctgtttatgttgg
tttagggagcttattattatgtaaagtactgtttcaacataacacaagaa
atgaaggtgctggaattcatcacacttaaagtaccctcataaatggatag
aaatgcttcataatgggaaaggggctcggagctgatggattctttcataa
atgcagacttaagtatctttgcaaaagatccattaatttcccatgccaaa
tttgagcatgacaccccaggtatgagacttctggatattatatttgtaca
ctgccagcctttgactaagacttggcagaaacactgtttgtcttcaatct
ttccaatagttacatggcttatctgtaccgatgatctcattggtggatgg
gtaatagctggctgtaaagcacagatcagtacctagttcaagaactgact
gaac
gaattcagtccaccaccttcctgtgagaggcttgcattttgaaaaggcaa
agggggtactcacttttatttattatctatttttttgagattataattac
aacatttttcttctctttcctcccttcaaacattctcctgtaaacacaca
cacacacacacacacacacacacacacacacacacactccttttcaattt
cagagctcctttttactatctgtgttattctcatttcttattctcatgct
ttctggacagagctgctcatagcaaaggaaggaaggcggttaaaaactga
cttcaatcaatctgatgagcaggtggggtttggcccaagactcatggtgt
aaattccttgccgtgagtgacttgccatccttcctgcagcatttgaccag
aagtgtatgtacaacactggttggtgaggaaagctaacctacacttatca
gctgctggggccttattttcaagctgtccagatgtacaaaagagagctaa
ctggggcccacagcgcaggcattgaactaaaggagctaaccatggctcta
cagcataggctagagctatatagagacctagtgcataggaagaagggcag
acattggttctgatccacatttggattaagaactcacatgtgctgatgtt
ttctactcactagacccagtatgtgaggcaggagaatggctggagacaga
gtatggtcagctgccacgtgaaagagtgagcaagcctctttcatcctcat
tgcagacaggacacctaaccggggactcactatgagatgtaccaatatca
ttttaaaaaatgaaaactgccttcatgtccttgttttaaaaaggttcctc
aatacttctcattctggaaaaaatatttattgtttaaatacagcttgatg
ggatttaagtacctctcttccctcacactagaactttggatgcagaagta
ttcccaggaattgcccttttctgaactgaaacagtagccaatcaagagaa
cctaaattccttggtttggaggtactcagcccacgccattgaaccagcta
atggctgtctgatgatagctcggtctccgaacagttttgcaaacacaggg
acaagtacaggaaattgtatgcttctcaaatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156953268_156954444
seq2: B6Ng01-154K11.b_46_1199

seq1  GAATTCCATAAAAATATTAATTCATCTAGACAATATGATATTATGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAAATATTAATTCATCTAGACAATATGATATTATGAAAGT  50

seq1  TCATCTTCATATTGACTGCTTCATATGGACTGCTTCCCAGAAGGTAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCATATTGACTGCTTCATATGGACTGCTTCCCAGAAGGTAATCA  100

seq1  CACCATGCTATGGGCAGTGGGGGTCTCCCCAAGCCAAATCATACAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCTATGGGCAGTGGGGGTCTCCCCAAGCCAAATCATACAATTCC  150

seq1  AGATAAATGAGGAACACAGTGATGGTAAGCATGAGACAGGAGCATGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATGAGGAACACAGTGATGGTAAGCATGAGACAGGAGCATGACAG  200

seq1  CAAAGTTCTCCAGGGAGCACCCATTGTAGCTGTGCAAAACAGTAGACCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCTCCAGGGAGCACCCATTGTAGCTGTGCAAAACAGTAGACCGT  250

seq1  CTTCAGGAACCTCATTTGCCCACTATAACTTCTCTTGCATAGCATCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAACCTCATTTGCCCACTATAACTTCTCTTGCATAGCATCCACC  300

seq1  GTTACTCATGATCTCTTACTGCCTGCACATTGCTTAATGGTTCCTGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCATGATCTCTTACTGCCTGCACATTGCTTAATGGTTCCTGTTGT  350

seq1  GTCCAAAAGAATAATTTTTTTTTCAAAACTGTCCAGCCAAGTCATTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAAGAATAATTTTTTTTTCAAAACTGTCCAGCCAAGTCATTTCAC  400

seq1  CTTTTGGAATCAACACATTCAAGCTTTGACCAAGAAGGCACTAACTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGAATCAACACATTCAAGCTTTGACCAAGAAGGCACTAACTGGGA  450

seq1  TCAGTTATCTCATGGTTACCTGGCCTTATTATTCTTTTGAAATGTGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATCTCATGGTTACCTGGCCTTATTATTCTTTTGAAATGTGGTAT  500

seq1  GGAATTATTATTCTTTCATGTCAATCAGAATTGTAAGTTTAGATAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATTATTCTTTCATGTCAATCAGAATTGTAAGTTTAGATAAAGAC  550

seq1  CAGTTCATGACAGACTCTTAACTAAGGACCATAGTGTCTGCCTCAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATGACAGACTCTTAACTAAGGACCATAGTGTCTGCCTCAAGACA  600

seq1  CTATAAAATTCTCCTGCGATTATATAATTCTTCAACCTGAAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATTCTCCTGCGATTATATAATTCTTCAACCTGAAAAAAAAAAA  650

seq1  AAGAGAAAAAAGAAATTACAGACGCACAAGTTTTTCTTTATTACCTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAAAGAAATTACAGACGCACAAGTTTTTCTTTATTACCTTGAA  700

seq1  AGTAGTTTTTCATCCCTCTTTTCAATGGGATGAGGAGCTGTTTATGTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTTTCATCCCTCTTTTCAATGGGATGAGGAGCTGTTTATGTTGG  750

seq1  TTTAGGGAGCTTATTATTATGTAAAGTACTGTTTCAACATAACACAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAGCTTATTATTATGTAAAGTACTGTTTCAACATAACACAAGAA  800

seq1  ATGAAGGTGCTGGAATTCATCACACTTAAAGTACCCTCATAAATGGATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTGCTGGAATTCATCACACTTAAAGTACCCTCATAAATGGATAG  850

seq1  AAATGCTTCATAATGGGAAAGGGGCTCGGAGCTGATGGATTCTTTCATAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAATGCTTCATAATGGGAAAGGGGCTCGGAGCTGATGGATTCTTTCAT-A  899

seq1  AATGCAGACTTAAGTATCTTTGCAAAAGATCCATTAATTTCCCCATGCCA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATGCAGACTTAAGTATCTTTGCAAAAGATCCATTAATTT-CCCATGCCA  948

seq1  AATTTGAGCATGACACCCCAGGTATGAGGACTTCTGGAATATTATATTTG  1000
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  AATTTGAGCATGACACCCCAGGTATGA-GACTTCTGG-ATATTATATTTG  996

seq1  TACACTGCCAGCCTTTGACTAAAGACTTGGCAGGAAACACTTGTTTGTCT  1050
      |||||||||||||||||||| ||||||||||| ||||||| |||||||||
seq2  TACACTGCCAGCCTTTGACT-AAGACTTGGCA-GAAACAC-TGTTTGTCT  1043

seq1  TCAAATCTTTCCAAATAGTTTACATGGCTTTATCTGTTACCGATGATCCT  1100
      || ||||||||| ||||| ||||||||| ||||||| |||||||||| ||
seq2  TC-AATCTTTCC-AATAG-TTACATGGC-TTATCTG-TACCGATGAT-CT  1087

seq1  CATTGTGTGATATGGTTTAATAGCTGGCTGGTTAGAAGCACAGATCAGTA  1150
      ||||| |||  ||||  |||||||||||||  || |||||||||||||||
seq2  CATTG-GTG-GATGG-GTAATAGCTGGCTG--TA-AAGCACAGATCAGTA  1131

seq1  ACCATAGTTACAAGAACTGGACTGAAC  1177
        | ||||| |||||||| ||||||||
seq2  --CCTAGTT-CAAGAACT-GACTGAAC  1154

seq1: chr3_157156061_157157201
seq2: B6Ng01-154K11.g_70_1203 (reverse)

seq1  AGCATACTGAGAGAGCATACAATTTTCCTGTTACTTTGTCACTGTGTTTT  50
      |||||  ||||| ||||||||| ||||||| ||| ||||| ||||| |||
seq2  AGCAT-TTGAGA-AGCATACAA-TTTCCTG-TAC-TTGTCCCTGTG-TTT  44

seq1  GCAAAACTGTTCCGAGACCGAGCTAATCATCAGACAGCCATTAGCTGGTT  100
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  GCAAAACTGTTCGGAGACCGAGCT-ATCATCAGACAGCCATTAGCTGGTT  93

seq1  CAAT-GCGTGGGCTGAGTAACTCCAAAACAAGAGATTTAGTTTCTCTTGA  149
      |||| |||||||||||||| ||||||| ||||  |||||| |||||||||
seq2  CAATGGCGTGGGCTGAGTACCTCCAAACCAAGGAATTTAGGTTCTCTTGA  143

seq1  TTGGCTACTGTTTCAGTTCAG-AAAGGGCAATTCCTGGG-ATACTTCTGC  197
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TTGGCTACTGTTTCAGTTCAGAAAAGGGCAATTCCTGGGAATACTTCTGC  193

seq1  ATCCAAAGTTCTAGTGTGAGGGAAGAGAAGGTACTTAAATCCCATCAAGC  247
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCCAAAGTTCTAGTGTGAGGGAAGAG-AGGTACTTAAATCCCATCAAGC  242

seq1  TGTATTTAAAACAATAAATATTTTTTTCCAGAATGAGAAGTATTGAGGAA  297
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  TGTATTT-AAACAATAAATA-TTTTTTCCAGAATGAGAAGTATTGAGGAA  290

seq1  CCTTTTTAAAACAAGGACATGAAGGCAGTTTTCATTTTTTAAAATGATAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTAAAACAAGGACATGAAGGCAGTTTTCATTTTTTAAAATGATAT  340

seq1  TGGTACATCTCATAGTGAGTCCCCGGTTAGGTGTCCTGTCTGCAATGAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATCTCATAGTGAGTCCCCGGTTAGGTGTCCTGTCTGCAATGAGG  390

seq1  ATGAAAGAGGCTTGCTCACTCTTTCACGTGGCAGCTGACCATACTCTGTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGGCTTGCTCACTCTTTCACGTGGCAGCTGACCATACTCTGTC  440

seq1  TCCAGCCATTCTCCTGCCTCACATACTGGGTCTAGTGAGTAGAAAACATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCATTCTCCTGCCTCACATACTGGGTCTAGTGAGTAGAAAACATC  490

seq1  AGCACATGTGAGTTCTTAATCCAAATGTGGATCAGAACCAATGTCTGCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGTGAGTTCTTAATCCAAATGTGGATCAGAACCAATGTCTGCCC  540

seq1  TTCTTCCTATGCACTAGGTCTCTATATAGCTCTAGCCTATGCTGTAGAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTATGCACTAGGTCTCTATATAGCTCTAGCCTATGCTGTAGAGC  590

seq1  CATGGTTAGCTCCTTTAGTTCAATGCCTGCGCTGTGGGCCCCAGTTAGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTAGCTCCTTTAGTTCAATGCCTGCGCTGTGGGCCCCAGTTAGCT  640

seq1  CTCTTTTGTACATCTGGACAGCTTGAAAATAAGGCCCCAGCAGCTGATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTACATCTGGACAGCTTGAAAATAAGGCCCCAGCAGCTGATAA  690

seq1  GTGTAGGTTAGCTTTCCTCACCAACCAGTGTTGTACATACACTTCTGGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGTTAGCTTTCCTCACCAACCAGTGTTGTACATACACTTCTGGTC  740

seq1  AAATGCTGCAGGAAGGATGGCAAGTCACTCACGGCAAGGAATTTACACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGCAGGAAGGATGGCAAGTCACTCACGGCAAGGAATTTACACCA  790

seq1  TGAGTCTTGGGCCAAACCCCACCTGCTCATCAGATTGATTGAAGTCAGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTGGGCCAAACCCCACCTGCTCATCAGATTGATTGAAGTCAGTT  840

seq1  TTTAACCGCCTTCCTTCCTTTGCTATGAGCAGCTCTGTCCAGAAAGCATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCGCCTTCCTTCCTTTGCTATGAGCAGCTCTGTCCAGAAAGCATG  890

seq1  AGAATAAGAAATGAGAATAACACAGATAGTAAAAAGGAGCTCTGAAATTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGAAATGAGAATAACACAGATAGTAAAAAGGAGCTCTGAAATTG  940

seq1  AAAAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  990

seq1  TTTACAGGAGAATGTTTGAAGGGAGGAAAGAGAAGAAAAATGTTGTAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGAGAATGTTTGAAGGGAGGAAAGAGAAGAAAAATGTTGTAATT  1040

seq1  ATAATCTCAAAAAAATAGATAATAAATAAAAGTGAGTACCCCCTTTGCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCAAAAAAATAGATAATAAATAAAAGTGAGTACCCCCTTTGCCT  1090

seq1  TTTCAAAATGCAAGCCTCTCACAGGAAGGTGGTGGACTGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATGCAAGCCTCTCACAGGAAGGTGGTGGACTGAATTC  1134