BAC Information

Click to search

BAC

Clone NameB6Ng01-154P16
Chromosome3 (Build37)
Map Location 141,404,731 - 141,536,009
singlet/doubletdoublet
Overlap geneUnc5c, Bmpr1b
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154P16.bB6Ng01-154P16.g
ACCDH949882DH949883
length1,0981,090
definitionDH949882|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P16, 5' end.DH949883|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,404,731 - 141,405,834)(141,534,916 - 141,536,009)
sequence
gaattccaaagactgtccttctgcttgtagtctgtacttacctcagtcag
tgtggatgggaaaagacagctctagagaacaataggcttgcatttcctga
tgatggtcagacttagcacagtcttaactattttatattgataaagagaa
ggctaaatattgcttatctggaagtcaagttctttgtaaaaagtaataaa
agactagtaattcatcaatgggcttgtcaatttacagcccttttattgta
gaaaatttagcttttaaacaattcagagctgatttgtttgttcccttgtg
tggtggtgtcatatatagtaattcaactttgggactttttcctgtttttt
ttacatcttatttctcaattagactttattacattacgtttctttgtcca
tttgcttttatttcttcatggtctaacttcagttttagaagtttacaaaa
ttgaagacaagttcacctccacaatatggtctgtgtacattcagctctca
aaagcaatgagccagacatatgtgcaattaagggaggaaaacaaattccc
tttcttggcaaattccttccttctgcagaagttacaacaactgaggaaaa
tgtcactgtagtttccatttgaattttttaaattctttgcccattttatt
tttacaattgcctaaagatagaatttcaatttgcttaaagactaacactt
tttacagcacgtgaaatacctttagtttcatagtcctattgaaaactata
aagaatattgaataatgccattaaagaagaagtagataaatgtttgtttg
tttgtttgtttggagatcgaagaaggaaatagctgcaaatacaatgtggc
cttccattcttggaatgttttcttggttatttgagatattctaacggtac
aataagatatctattgccaatgggacaagcaaaagaaaatggaatcccgg
aacttcaacttataggcagatgaaaccaaacaattcttgtgtgcatagag
aacaccttgctccttgggatgtgtgcatagttgatcattgtacccacatc
tgagagcttctcagatggacttcttaggcactcaaccgcacatacaac
gaattccaactgagaaatactgtcaccaatagcctgaacacagaggaaac
cacacaaagagtattcactcagatttcttgtggtgaaggtctgtcttaca
tattgccttcagtactgtgtgttttacactcccgctgaggtttcagtccg
ttgagtaaaaagctccaaagaatttgagcgtggactgttcacaggcattt
tttcttctacagcatcatgcatccatttgaccagagtcaaacacggagtt
atcattctccttcctagccagtcactagtatgttccagctccgccctttg
aggttttataaaatgagacatgttggatcacttgagacctaaaaactaag
taaacagttgtaaggatgttgatggtaactcgagggctaatgcatggctg
aatgctgctcccactaatgcaagcagacagacctacaaatcacggctcat
acagctctcacagctttgttcccatgacctttagcactccattgtcatgt
gccttggacactgcacatgcatatggatgagaagaggatggaagatgtgg
actccacgctttctttctagggacacgatggcagcttgtgacttattggg
aacccacagtataagtcctgatttatgaggagaatctatctctttgtaca
cagccctgtatacacaagttattcttttcagtttactcccaggttagcgg
ataatgagtgggagtaaataagaggacttccaattcaaggcccaatgctg
taactgtttctgttcagctttatatatattcatactttctcacgaagtca
atttcaccatatgtaaaacagaaatggtattatcttcaaatgatcaataa
gaagatgaaatgtcatgtaacaactgaaagtcatttttatttaggaaaca
ttaaaatttacttaaatcaagacatttctataaattctatttgtatccat
acccaatagtgtttgctgccaatgctcagtgtctgctgtgccatgccagc
ccaaggagagaggagaaggtgctagaacttagcctgcatcgccctctgct
gtgaattgtatcccacttctgctatcttccaccaccctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141404731_141405834
seq2: B6Ng01-154P16.b_47_1144

seq1  GAATTCCAAAGACTGTCCTTCTGCTTGTAGTCTGTACTTACCTCAGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGACTGTCCTTCTGCTTGTAGTCTGTACTTACCTCAGTCAG  50

seq1  TGTGGATGGGAAAAGACAGCTCTAGAGAACAATAGGCTTGCATTTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGGGAAAAGACAGCTCTAGAGAACAATAGGCTTGCATTTCCTGA  100

seq1  TGATGGTCAGACTTAGCACAGTCTTAACTATTTTATATTGATAAAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTCAGACTTAGCACAGTCTTAACTATTTTATATTGATAAAGAGAA  150

seq1  GGCTAAATATTGCTTATCTGGAAGTCAAGTTCTTTGTAAAAAGTAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATATTGCTTATCTGGAAGTCAAGTTCTTTGTAAAAAGTAATAAA  200

seq1  AGACTAGTAATTCATCAATGGGCTTGTCAATTTACAGCCCTTTTATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTAATTCATCAATGGGCTTGTCAATTTACAGCCCTTTTATTGTA  250

seq1  GAAAATTTAGCTTTTAAACAATTCAGAGCTGATTTGTTTGTTCCCTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTAGCTTTTAAACAATTCAGAGCTGATTTGTTTGTTCCCTTGTG  300

seq1  TGGTGGTGTCATATATAGTAATTCAACTTTGGGACTTTTTCCTGTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGTCATATATAGTAATTCAACTTTGGGACTTTTTCCTGTTTTTT  350

seq1  TTACATCTTATTTCTCAATTAGACTTTATTACATTACGTTTCTTTGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTATTTCTCAATTAGACTTTATTACATTACGTTTCTTTGTCCA  400

seq1  TTTGCTTTTATTTCTTCATGGTCTAACTTCAGTTTTAGAAGTTTACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTATTTCTTCATGGTCTAACTTCAGTTTTAGAAGTTTACAAAA  450

seq1  TTGAAGACAAGTTCACCTCCACAATATGGTCTGTGTACATTCAGCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACAAGTTCACCTCCACAATATGGTCTGTGTACATTCAGCTCTCA  500

seq1  AAAGCAATGAGCCAGACATATGTGCAATTAAGGGAGGAAAACAAATTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGAGCCAGACATATGTGCAATTAAGGGAGGAAAACAAATTCCC  550

seq1  TTTCTTGGCAAATTCCTTCCTTCTGCAGAAGTTACAACAACTGAGGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGCAAATTCCTTCCTTCTGCAGAAGTTACAACAACTGAGGAAAA  600

seq1  TGTCACTGTAGTTTCCATTTGAATTTTTTAAATTCTTTGCCCATTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTAGTTTCCATTTGAATTTTTTAAATTCTTTGCCCATTTTATT  650

seq1  TTTACAATTGCCTAAAGATAGAATTTCAATTTGCTTAAAGACTAACACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATTGCCTAAAGATAGAATTTCAATTTGCTTAAAGACTAACACTT  700

seq1  TTTACAGCACGTGAAATACCTTTAGTTTCATAGTCCTATTGAAAACTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCACGTGAAATACCTTTAGTTTCATAGTCCTATTGAAAACTATA  750

seq1  AAGAATATTGAATAATGCCATTAAAGAAGAAGTAGATAAATGTTTGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATTGAATAATGCCATTAAAGAAGAAGTAGATAAATGTTTGTTTG  800

seq1  TTTGTTTGTTTGGAGATCGAAGAAGGAAATAGCTGCAAATACAATGTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGGAGATCGAAGAAGGAAATAGCTGCAAATACAATGTGGC  850

seq1  CTTCCATTCTTGGAATGTTTTCTTGGTTATTTGAGATATTCTAACGGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTCTTGGAATGTTTTCTTGGTTATTTGAGATATTCTAACGGTAC  900

seq1  AATAAGATATCTATTGCCAATGGGACAAGCAAAAAGAAAATGGAATCCCG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATAAGATATCTATTGCCAATGGGACAAGC-AAAAGAAAATGGAATCCCG  949

seq1  GAACTTCAAACTTATAGGCAGATGAAACCAAACAATTCTTGTGTTGCAAT  1000
      ||||||| ||||||||||||||||||||||||||||||||||| ||| ||
seq2  GAACTTC-AACTTATAGGCAGATGAAACCAAACAATTCTTGTG-TGC-AT  996

seq1  AGAGAACACCTTGCTCCCTGGGATGTGGTGCATAGTTGATCCATGTACAC  1050
      ||||||||||||||||| |||||||| ||||||||||||||  ||||| |
seq2  AGAGAACACCTTGCTCCTTGGGATGT-GTGCATAGTTGATCATTGTACCC  1045

seq1  ACAACCTGAGAGCTTCTCAGATAGAC-TCTTAGGCACTCCAACCGCACAT  1099
      || | ||||||||||||||||| ||| ||||||||||| |||||||||||
seq2  AC-ATCTGAGAGCTTCTCAGATGGACTTCTTAGGCACT-CAACCGCACAT  1093

seq1  ACAAC  1104
      |||||
seq2  ACAAC  1098

seq1: chr3_141534916_141536009
seq2: B6Ng01-154P16.g_68_1157 (reverse)

seq1  GCAGGGTGGTGGAAGATAGGCAGAAGTGGGATTAACCAATCACAGCAGA-  49
      |||||||||||||||||| |||||||||||||  || | |||||||||| 
seq2  GCAGGGTGGTGGAAGATA-GCAGAAGTGGGAT--ACAATTCACAGCAGAG  47

seq1  GGCGATGCAGGCTAAGGTTCTTAGCACTCTCT-CTCTCTCTTTGGGCTGG  98
      ||||||||||||||| |||| ||||||  ||| ||||||| |||||||||
seq2  GGCGATGCAGGCTAA-GTTC-TAGCACCTTCTCCTCTCTCCTTGGGCTGG  95

seq1  CATGGCACAGCAAGACACTGAGCATTGGCAGCAAACACTATTGGGTATGG  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACAGC-AGACACTGAGCATTGGCAGCAAACACTATTGGGTATGG  144

seq1  ATACAAATAGAATTTATAGAAATGTCTTGATTTAAGTAAATTTTAATGTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATAGAATTTATAGAAATGTCTTGATTTAAGTAAATTTTAATGTT  194

seq1  TCCTAAATAAAAATGACTTTCAGTTGTTACATGACATTTCATCTTCTTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATAAAAATGACTTTCAGTTGTTACATGACATTTCATCTTCTTAT  244

seq1  TGATCATTTGAAGATAATACCATTTCTGTTTTACATATGGTGAAATTGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTTGAAGATAATACCATTTCTGTTTTACATATGGTGAAATTGAC  294

seq1  TTCGTGAGAAAGTATGAATATATATAAAGCTGAACAGAAACAGTTACAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGAGAAAGTATGAATATATATAAAGCTGAACAGAAACAGTTACAGC  344

seq1  ATTGGGCCTTGAATTGGAAGTCCTCTTATTTACTCCCACTCATTATCCGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCCTTGAATTGGAAGTCCTCTTATTTACTCCCACTCATTATCCGC  394

seq1  TAACCTGGGAGTAAACTGAAAAGAATAACTTGTGTATACAGGGCTGTGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGGAGTAAACTGAAAAGAATAACTTGTGTATACAGGGCTGTGTA  444

seq1  CAAAGAGATAGATTCTCCTCATAAATCAGGACTTATACTGTGGGTTCCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGATAGATTCTCCTCATAAATCAGGACTTATACTGTGGGTTCCCA  494

seq1  ATAAGTCACAAGCTGCCATCGTGTCCCTAGAAAGAAAGCGTGGAGTCCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCACAAGCTGCCATCGTGTCCCTAGAAAGAAAGCGTGGAGTCCAC  544

seq1  ATCTTCCATCCTCTTCTCATCCATATGCATGTGCAGTGTCCAAGGCACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCATCCTCTTCTCATCCATATGCATGTGCAGTGTCCAAGGCACAT  594

seq1  GACAATGGAGTGCTAAAGGTCATGGGAACAAAGCTGTGAGAGCTGTATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGGAGTGCTAAAGGTCATGGGAACAAAGCTGTGAGAGCTGTATGA  644

seq1  GCCGTGATTTGTAGGTCTGTCTGCTTGCATTAGTGGGAGCAGCATTCAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGATTTGTAGGTCTGTCTGCTTGCATTAGTGGGAGCAGCATTCAGC  694

seq1  CATGCATTAGCCCTCGAGTTACCATCAACATCCTTACAACTGTTTACTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATTAGCCCTCGAGTTACCATCAACATCCTTACAACTGTTTACTTA  744

seq1  GTTTTTAGGTCTCAAGTGATCCAACATGTCTCATTTTATAAAACCTCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGGTCTCAAGTGATCCAACATGTCTCATTTTATAAAACCTCAAA  794

seq1  GGGCGGAGCTGGAACATACTAGTGACTGGCTAGGAAGGAGAATGATAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGAGCTGGAACATACTAGTGACTGGCTAGGAAGGAGAATGATAACT  844

seq1  CCGTGTTTGACTCTGGTCAAATGGATGCATGATGCTGTAGAAGAAAAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTTTGACTCTGGTCAAATGGATGCATGATGCTGTAGAAGAAAAAAT  894

seq1  GCCTGTGAACAGTCCACGCTCAAATTCTTTGGAGCTTTTTACTCAACGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAACAGTCCACGCTCAAATTCTTTGGAGCTTTTTACTCAACGGA  944

seq1  CTGAAACCTCAGCGGGAGTGTAAAACACACAGTACTGAAGGCAATATGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTCAGCGGGAGTGTAAAACACACAGTACTGAAGGCAATATGTA  994

seq1  AGACAGACCTTCACCACAAGAAATCTGAGTGAATACTCTTTGTGTGGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACCTTCACCACAAGAAATCTGAGTGAATACTCTTTGTGTGGTTT  1044

seq1  CCTCTGTGTTCAGGCTATTGGTGACAGTATTTCTCAGTTGGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGTTCAGGCTATTGGTGACAGTATTTCTCAGTTGGAATTC  1090