BAC Information

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BAC

Clone NameB6Ng01-155C24
Chromosome3 (Build37)
Map Location 126,149,091 - 126,281,943
singlet/doubletdoublet
Overlap genenone
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155C24.bB6Ng01-155C24.g
ACCDH950038DH950039
length1,2091,141
definitionDH950038|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C24, 5' end.DH950039|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,149,091 - 126,150,315)(126,280,774 - 126,281,943)
sequence
gaattctttacatggttggggaaaaaaaaatcttttattacttaaaacca
ctttctttttttaattttattttatttttctgccaccaaacatccagagg
ctcccttcaaagagaaataggatgacgtgtctgtcaagggaactcgccat
ctcttatgcaggaacccattctctatttttagcatttcctgataggaaca
actctgtctaacatccatacagagaaaaaggcaagcacaccatctttcat
tatttttgccaggcatttagatttaatatcagctggataatactatcaat
tatctttctttccttcaagctttcctgagagcttcagttaccacagaatt
ccagctatgaaattcccagctgcctcggtgtccgctgtctccctgctgtc
tgtggggcagtggggcctaagcaatgggtggtgtgaagaagatccacctt
tccctacacttcggcttgtgctatgcagttcctggcatcctcgctggcct
caagctgcaccatttcacatctctcaagcaactgttactccagactcaac
agctctggttggccacccatcccactactcctgctaaagagatggataat
ggggaaaagcagagaaaggagacagaatgagtgtggcacaatgggaaagg
ggagcagaaataggggtggagtgatcccaagttcatctttggggtgctgt
cataaactttagatttaaatcaaggatgagctgaaacaggatgcaaaagg
tatttaggattaagttgactgggttccaaatagagtctccttaatgatta
tctcaattatggttctataggtggttcaaagaagttccttgcttgaggta
acagaccattttagatgagatgattcacttgtttattactgcattgtgca
ctgagatcccattttcctgggcctcattcttcctgtaatcttaggcgact
tcagatgtaagacaaaggatacagacctttacgtgtattttaggggtctg
ggaatagacgctgcacacattgctggtaagaccattcagtaactctatca
ttatgctgcagctttaaaaggaaataagaaagattggcattctgcctttg
gatgattctcctctatgatggcatgcttacctgacgaagagcactgatgc
aagcagcgaattccagaacgaatctttggttacctgtcagccagtgtctt
ctttagcaa
gaattccatgctttcatgaaggaccaggatagaaagttatgatgagaact
ttttctgcatcaccttcctctctgcctttgctcacatgacttgcctatgg
tcagagctgcatcttacatctttagctgattgcctaacatttctggacat
taagaagccagctcctggaacttagctaaggagaactaggaaattcactc
cctaggggtttttgttgctagacaatgaaactaagtgttaacacaggaat
atggatattgatgttttgagctagtctgaatctattagttcagattcaag
aaatggacatttctgggccagccaagtgtttattttgttgtaaattgcga
ttataactgtaaggaagaaaaccatcttaacacactgccaagagtgccgt
ctctggatgttgtcatgtgcaatgtatgcctgcaaacatgtgactacaaa
gacactcaaatgaactatgtactccggtgggtgtgcttcttgtccacagc
gataaagaaaataagagatggcttgctgttcctccagctggaagaaaagt
aaatacagacccaaggatggctcttcaaacaccctagatgctacagataa
gaaaaatgatagcttttcccacactcagagaagtaaaataaaacataaca
aaacaaaacaaacttcagaaattaaaaacacaaacccccacatcgttgcc
aaggcagggccttttaatcttaagtcagtctgtttctctgctggtccagc
cctcagcctcagcctcagcctcagcctcagtctcagcctccagctttgca
tttattttttattttattttgttttgtttattttattttatttttttcag
tctgggttgttttggaagcttatcatccattctttataccacttctctaa
ttctgtgtttatatgtgctccaaagaagagggaacatttttctactaaac
aacacagcttattgtccatcttgagaaagccattatacaagagtgatgaa
agttagatttattctatgtgcagtagagaaatcccctcttgtgttcagtt
cggtaaattcagaagaatttgtcgtgctgacctagaggattgaacatgaa
gcatcaggaagcacgtgagcgagaaagactttgtgtatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126149091_126150315
seq2: B6Ng01-155C24.b_42_1250

seq1  GAATTCTTTACATGGTTGGGGAAAAAAAAATCTTTTATTACTTAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACATGGTTGGGGAAAAAAAAATCTTTTATTACTTAAAACCA  50

seq1  CTTTCTTTTTTTAATTTTATTTTATTTTTCTGCCACCAAACATCCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTTAATTTTATTTTATTTTTCTGCCACCAAACATCCAGAGG  100

seq1  CTCCCTTCAAAGAGAAATAGGATGACGTGTCTGTCAAGGGAACTCGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCAAAGAGAAATAGGATGACGTGTCTGTCAAGGGAACTCGCCAT  150

seq1  CTCTTATGCAGGAACCCATTCTCTATTTTTAGCATTTCCTGATAGGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGCAGGAACCCATTCTCTATTTTTAGCATTTCCTGATAGGAACA  200

seq1  ACTCTGTCTAACATCCATACAGAGAAAAAGGCAAGCACACCATCTTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTAACATCCATACAGAGAAAAAGGCAAGCACACCATCTTTCAT  250

seq1  TATTTTTGCCAGGCATTTAGATTTAATATCAGCTGGATAATACTATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGCCAGGCATTTAGATTTAATATCAGCTGGATAATACTATCAAT  300

seq1  TATCTTTCTTTCCTTCAAGCTTTCCTGAGAGCTTCAGTTACCACAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCTTTCCTTCAAGCTTTCCTGAGAGCTTCAGTTACCACAGAATT  350

seq1  CCAGCTATGAAATTCCCAGCTGCCTCGGTGTCCGCTGTCTCCCTGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTATGAAATTCCCAGCTGCCTCGGTGTCCGCTGTCTCCCTGCTGTC  400

seq1  TGTGGGGCAGTGGGGCCTAAGCAATGGGTGGTGTGAAGAAGATCCACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCAGTGGGGCCTAAGCAATGGGTGGTGTGAAGAAGATCCACCTT  450

seq1  TCCCTACACTTCGGCTTGTGCTATGCAGTTCCTGGCATCCTCGCTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACACTTCGGCTTGTGCTATGCAGTTCCTGGCATCCTCGCTGGCCT  500

seq1  CAAGCTGCACCATTTCACATCTCTCAAGCAACTGTTACTCCAGACTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCACCATTTCACATCTCTCAAGCAACTGTTACTCCAGACTCAAC  550

seq1  AGCTCTGGTTGGCCACCCATCCCACTACTCCTGCTAAAGAGATGGATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGTTGGCCACCCATCCCACTACTCCTGCTAAAGAGATGGATAAT  600

seq1  GGGGAAAAGCAGAGAAAGGAGACAGAATGAGTGTGGCACAATGGGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAGCAGAGAAAGGAGACAGAATGAGTGTGGCACAATGGGAAAGG  650

seq1  GGAGCAGAAATAGGGGTGGAGTGATCCCAAGTTCATCTTTGGGGTGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAAATAGGGGTGGAGTGATCCCAAGTTCATCTTTGGGGTGCTGT  700

seq1  CATAAACTTTAGATTTAAATCAAGGATGAGCTGAAACAGGATGCAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTTTAGATTTAAATCAAGGATGAGCTGAAACAGGATGCAAAAGG  750

seq1  TATTTAGGATTAAGTTGACTGGGTTCCAAATAGAGTCTCCTTAATGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGATTAAGTTGACTGGGTTCCAAATAGAGTCTCCTTAATGATTA  800

seq1  TCTCAATTATGGTTCTATAGGTGGTTCAAAGAAGTTCCTTGCTTGAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTATGGTTCTATAGGTGGTTCAAAGAAGTTCCTTGCTTGAGGTA  850

seq1  ACAGACCATTTTAGATGAGATGATTCACTTGTTTATTACTGCATTGTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCATTTTAGATGAGATGATTCACTTGTTTATTACTGCATTGTGCA  900

seq1  CTGAGATCCCATTTTCCTGGGCCTCATTCTTCCTGTAATCTTAGGCGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCCCATTTTCCTGGGCCTCATTCTTCCTGTAATCTTAGGCGACT  950

seq1  TCAGATGTAAGACAAAGGATACAGACCTTTACGTGTATTTTAGGGGTCT-  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAGATGTAAGACAAAGGATACAGACCTTTACGTGTATTTTAGGGGTCTG  1000

seq1  GGAATAGGACGCTGCAACACATTGCTGGTAAGACCATTCAGTAACTCTTA  1049
      |||||| |||||||| ||||||||||||||||||||||||||||||| ||
seq2  GGAATA-GACGCTGC-ACACATTGCTGGTAAGACCATTCAGTAACTC-TA  1047

seq1  TCATTATGCCTGCAGCTTTAAAAGGAAATAAGAAAGATTGGGCATTCCTG  1099
      |||||||| |||||||||||||||||||||||||||||| |||||||   
seq2  TCATTATG-CTGCAGCTTTAAAAGGAAATAAGAAAGATT-GGCATTC--T  1093

seq1  GCCTTTGGATAGATTCTCTTCTAATGATTGCCATGGCTACCTGCAGAAGA  1149
      |||||||||| ||||||| ||| |||| || ||||  ||||||  |||| 
seq2  GCCTTTGGAT-GATTCTCCTCT-ATGA-TGGCATGCTTACCTGACGAAG-  1139

seq1  AGCACTGATGCAAAAGCAGGCAGAG-ATGCCAGGACGGATCCTTGTGGTT  1198
      |||||||||||||      |||| | || |||| ||| |||  | |||||
seq2  AGCACTGATGCAA------GCAGCGAATTCCAGAACGAATC--TTTGGTT  1181

seq1  ACCCTGTCAGCCAGTG-CTTC-TTAGCAA  1225
      | |||||||||||||| |||| |||||||
seq2  A-CCTGTCAGCCAGTGTCTTCTTTAGCAA  1209

seq1: chr3_126280774_126281943
seq2: B6Ng01-155C24.g_65_1205 (reverse)

seq1  TGCATACACAAAGTATCTTTCTTCTGCTTCTACGTTGCTCTCCTTGGAAT  50
      |||||||||||||  |||||||   |||   ||| |||| ||||  ||  
seq2  TGCATACACAAAG--TCTTTCT--CGCT--CACG-TGCT-TCCT--GA--  38

seq1  TGGCTTCATGTTCTAATTCTCTTAGGGTTCCAGCAACGGACAAATCTTTC  100
        ||||||||||| ||| ||| ||||    |||||   ||||||| | | 
seq2  -TGCTTCATGTTC-AATCCTC-TAGG---TCAGCA--CGACAAAT-TCTT  79

seq1  CTGAATTTACCGAACTGAACACAGGAGGGGATTTCCTCCTACTGCACATA  150
      ||||||||||||||||||||||| |||||||||||   ||||||||||||
seq2  CTGAATTTACCGAACTGAACACAAGAGGGGATTTC--TCTACTGCACATA  127

seq1  GAATAAATCTAACTTTCATTCACTTCTGTGTATAATGGCTTTCTCAAGAT  200
      |||||||||||||||||| |||| ||| ||||||||||||||||||||||
seq2  GAATAAATCTAACTTTCA-TCAC-TCT-TGTATAATGGCTTTCTCAAGAT  174

seq1  GGACAATAAGCTGTGTTGTTTAGTAG-AAAATGTTCCCTCCTTCTTTGGA  249
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GGACAATAAGCTGTGTTGTTTAGTAGAAAAATGTTCCCT-CTTCTTTGGA  223

seq1  GCACATTATAAACACAGAATTAGAGAAGTGGTATAAAAGAATGGATGATA  299
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  GCACA-TATAAACACAGAATTAGAGAAGTGGTAT-AAAGAATGGATGATA  271

seq1  AGCTTCCAAAACAACCCAGACTGAAAAAAATAAAATAAAATAAAACAAAA  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCTTCCAAAACAACCCAGACTGAAAAAAATAAAATAAAAT-AAACAAAA  320

seq1  CAAAATAAAATAAAAAATAAATGCAAAGCTGGAGGCTGAGACTGAGGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAATAAAAAATAAATGCAAAGCTGGAGGCTGAGACTGAGGCTG  370

seq1  AGGCTGAGGCTGAGGCTGAGGGCTGGACCAGCAGAGAAACAGACTGACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGGCTGAGGCTGAGGGCTGGACCAGCAGAGAAACAGACTGACTT  420

seq1  AAGATTAAAAGGCCCTGCCTTGGCAACGATGTGGGGGTTTGTGTTTTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAAAGGCCCTGCCTTGGCAACGATGTGGGGGTTTGTGTTTTTAA  470

seq1  TTTCTGAAGTTTGTTTTGTTTTGTTATGTTTTATTTTACTTCTCTGAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGTTTGTTTTGTTTTGTTATGTTTTATTTTACTTCTCTGAGTG  520

seq1  TGGGAAAAGCTATCATTTTTCTTATCTGTAGCATCTAGGGTGTTTGAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAGCTATCATTTTTCTTATCTGTAGCATCTAGGGTGTTTGAAGA  570

seq1  GCCATCCTTGGGTCTGTATTTACTTTTCTTCCAGCTGGAGGAACAGCAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTTGGGTCTGTATTTACTTTTCTTCCAGCTGGAGGAACAGCAAG  620

seq1  CCATCTCTTATTTTCTTTATCGCTGTGGACAAGAAGCACACCCACCGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTTATTTTCTTTATCGCTGTGGACAAGAAGCACACCCACCGGAG  670

seq1  TACATAGTTCATTTGAGTGTCTTTGTAGTCACATGTTTGCAGGCATACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTTCATTTGAGTGTCTTTGTAGTCACATGTTTGCAGGCATACAT  720

seq1  TGCACATGACAACATCCAGAGACGGCACTCTTGGCAGTGTGTTAAGATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGACAACATCCAGAGACGGCACTCTTGGCAGTGTGTTAAGATGG  770

seq1  TTTTCTTCCTTACAGTTATAATCGCAATTTACAACAAAATAAACACTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTTACAGTTATAATCGCAATTTACAACAAAATAAACACTTGG  820

seq1  CTGGCCCAGAAATGTCCATTTCTTGAATCTGAACTAATAGATTCAGACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAGAAATGTCCATTTCTTGAATCTGAACTAATAGATTCAGACTA  870

seq1  GCTCAAAACATCAATATCCATATTCCTGTGTTAACACTTAGTTTCATTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAACATCAATATCCATATTCCTGTGTTAACACTTAGTTTCATTGT  920

seq1  CTAGCAACAAAAACCCCTAGGGAGTGAATTTCCTAGTTCTCCTTAGCTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAACAAAAACCCCTAGGGAGTGAATTTCCTAGTTCTCCTTAGCTAA  970

seq1  GTTCCAGGAGCTGGCTTCTTAATGTCCAGAAATGTTAGGCAATCAGCTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGAGCTGGCTTCTTAATGTCCAGAAATGTTAGGCAATCAGCTAA  1020

seq1  AGATGTAAGATGCAGCTCTGACCATAGGCAAGTCATGTGAGCAAAGGCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGATGCAGCTCTGACCATAGGCAAGTCATGTGAGCAAAGGCAG  1070

seq1  AGAGGAAGGTGATGCAGAAAAAGTTCTCATCATAACTTTCTATCCTGGTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGTGATGCAGAAAAAGTTCTCATCATAACTTTCTATCCTGGTC  1120

seq1  CTTCATGAAAGCATGGAATTC  1170
      |||||||||||||||||||||
seq2  CTTCATGAAAGCATGGAATTC  1141