BAC Information

Click to search

BAC

Clone NameB6Ng01-155F08
Chromosome12 (Build37)3 (Build37)
Map Location 111,595,270 - 111,595,31343,017,463 - 43,018,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245
Downstream geneLOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155F08.bB6Ng01-155F08.g
ACCDH950146DH950147
length5031,088
definitionDH950146|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F08, 5' end.DH950147|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,595,270 - 111,595,313)(43,017,463 - 43,018,577)
sequence
gaattcttaagttagttttatattctattacttgtttatcagctgtagaa
tttctctggtagaattttggggatcgattatgtatactatcatatcatca
acaaatagcgataccttgacttcttcctttccaatttgtatagctttgat
ctcttcttgttgtctaattgctctaactagaactttgaattccatgttaa
ataggtaagaagaaactgggcaaccttggccttaccgtgattgtagtggg
attgcttcaagtttctctatatttaatttgatattgactattggctcgat
gtatattgctattattattttcagatatgtgcctagaatcccttatcttc
caagacttttgacatgaagaggtgttacctttgttgtagtcctttttaga
acctaatgagaagatcatttggttttttttttttctttcactttgtttgt
gtagtggattatgttgatggattttcatatattgacccagccctgtatcc
ctg
gaattccagagctcatacaggggtgaagacccttccacattactcagcag
tcagcaccccacacgtatatctcgacagcaggcaaaaacatttagaacga
gactgtgatagaattaatatttgtagatatgggcttttctactctaaagt
cttcctttaaggaagcaaagaaaatataaggaaaatttgatattttgtat
tctgtgcattttttcattcttctgttttcataaatcagaaccaacatgaa
atttaacatcagaaccatttgttcttactgcaggtgaatgatatttataa
tgtacagtcataatttctacagatttatagctttgttattgttaaaaaaa
acaaattggtttgcattaggcacttattccagatctttgaaagttcatct
tcatccatctctgtgattctaagtatcttgtaatcagaggacactaacta
catctttttgtgactagctaattcaaaaaaattgcttggtttttacccag
gggtaatattagtcaattattaagccaatttattttctatttttataaga
ttttcctttattatttaaatgagttccaaaaattttaactcaatattact
gaagtaagtttaatttatgtctaaatgctactagagatagagtaaattat
aaatatttgaaagcctgtatcttagtattttcagtacacgtgcagaatga
tatatacagtttgataacataagtatctgtacatgtttattagtgtgtat
ttgaaaaatttatgtctgaagttgtttagttacaatgaataagtgactga
tacaggataaagaaaaagcagtttggcaagaccatttgatgtacgcagac
atagattgggtcctatacaacttctgatttaaaagaaaacttgaagcaca
tgatgtgactagagccttatctggaattggagtggactatatttgtaaat
gcaagagctcatttgtagatttgaaatataccggattatttaacttctat
tgtcacattgtgattctttggtggctcattcaagaaatatgagtttattt
ttcttctatatcagtctaaatctgtatctacatgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_111595270_111595313
seq2: B6Ng01-155F08.b_497_548 (reverse)

seq1  --------CAGGGATGGCTCAATATATGAAAATCCATCAACGTAATCCAC  42
              ||||| ||| ||||||||||||||||||||||| ||||||||
seq2  CAGGGATACAGGGCTGGGTCAATATATGAAAATCCATCAACATAATCCAC  50

seq1  TA  44
      ||
seq2  TA  52

seq1: chr3_43017463_43018577
seq2: B6Ng01-155F08.g_66_1153 (reverse)

seq1  AAATCAATGTAGATACAGTATTTTAAGAACTGAATATAAGAAGAAAAATA  50
      ||||| |||||||||||| ||||  || |||| |||| ||||||||||||
seq2  AAATC-ATGTAGATACAG-ATTT--AG-ACTG-ATAT-AGAAGAAAAATA  43

seq1  AACTCATATATCTTGAAAATTGAGCCAACACAAGAAATCACAAAATTGTG  100
      ||||||||| |||||||   ||||||| || ||| ||||||||   ||||
seq2  AACTCATATTTCTTGAA---TGAGCCACCA-AAG-AATCACAA---TGTG  85

seq1  ACCAATAGAAGTTAAAATTAATCCCGGTATATTTTCAAATCTACAAATGA  150
      | ||||||||||||||  |||| |||||||| ||||||||||||||||||
seq2  A-CAATAGAAGTTAAA--TAAT-CCGGTATA-TTTCAAATCTACAAATGA  130

seq1  GCTTCTTTTGCATTTTACAAATATAGTCCACTCCAATTCCAGATAAGGCT  200
      |   || ||||| |||||||||||||||||||||||||||||||||||||
seq2  G---CTCTTGCA-TTTACAAATATAGTCCACTCCAATTCCAGATAAGGCT  176

seq1  CTTAGTCACATCATGTGCCTTCAAGTTTTCTTTTTAAATCAGAAGTTGTA  250
      | ||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  C-TAGTCACATCATGTG-CTTCAAGTTTTC-TTTTAAATCAGAAGTTGTA  223

seq1  TAGGACCCAATCTATGTCTGCGTACATCAAATGGTCTTGCCAAACTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCCAATCTATGTCTGCGTACATCAAATGGTCTTGCCAAACTGCTT  273

seq1  TTTCTTTATCCTGTATCAGTCACTTATTCATTGTAACTAAACAACTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATCCTGTATCAGTCACTTATTCATTGTAACTAAACAACTTCAG  323

seq1  ACATAAATTTTTCAAATACACACTAATAAACATGTACAGATACTTATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATTTTTCAAATACACACTAATAAACATGTACAGATACTTATGTT  373

seq1  ATCAAACTGTATATATCATTCTGCACGTGTACTGAAAATACTAAGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTGTATATATCATTCTGCACGTGTACTGAAAATACTAAGATACA  423

seq1  GGCTTTCAAATATTTATAATTTACTCTATCTCTAGTAGCATTTAGACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAAATATTTATAATTTACTCTATCTCTAGTAGCATTTAGACATA  473

seq1  AATTAAACTTACTTCAGTAATATTGAGTTAAAATTTTTGGAACTCATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACTTACTTCAGTAATATTGAGTTAAAATTTTTGGAACTCATTTA  523

seq1  AATAATAAAGGAAAATCTTATAAAAATAGAAAATAAATTGGCTTAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAAGGAAAATCTTATAAAAATAGAAAATAAATTGGCTTAATAAT  573

seq1  TGACTAATATTACCCCTGGGTAAAAACCAAGCAATTTTTTTGAATTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATATTACCCCTGGGTAAAAACCAAGCAATTTTTTTGAATTAGCT  623

seq1  AGTCACAAAAAGATGTAGTTAGTGTCCTCTGATTACAAGATACTTAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAAAAGATGTAGTTAGTGTCCTCTGATTACAAGATACTTAGAAT  673

seq1  CACAGAGATGGATGAAGATGAACTTTCAAAGATCTGGAATAAGTGCCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATGGATGAAGATGAACTTTCAAAGATCTGGAATAAGTGCCTAA  723

seq1  TGCAAACCAATTTGTTTTTTTTAACAATAACAAAGCTATAAATCTGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCAATTTGTTTTTTTTAACAATAACAAAGCTATAAATCTGTAGA  773

seq1  AATTATGACTGTACATTATAAATATCATTCACCTGCAGTAAGAACAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGACTGTACATTATAAATATCATTCACCTGCAGTAAGAACAAATG  823

seq1  GTTCTGATGTTAAATTTCATGTTGGTTCTGATTTATGAAAACAGAAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATGTTAAATTTCATGTTGGTTCTGATTTATGAAAACAGAAGAAT  873

seq1  GAAAAAATGCACAGAATACAAAATATCAAATTTTCCTTATATTTTCTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGCACAGAATACAAAATATCAAATTTTCCTTATATTTTCTTTG  923

seq1  CTTCCTTAAAGGAAGACTTTAGAGTAGAAAAGCCCATATCTACAAATATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTAAAGGAAGACTTTAGAGTAGAAAAGCCCATATCTACAAATATT  973

seq1  AATTCTATCACAGTCTCGTTCTAAATGTTTTTGCCTGCTGTCGAGATATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATCACAGTCTCGTTCTAAATGTTTTTGCCTGCTGTCGAGATATA  1023

seq1  CGTGTGGGGTGCTGACTGCTGAGTAATGTGGAAGGGTCTTCACCCCTGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGGGTGCTGACTGCTGAGTAATGTGGAAGGGTCTTCACCCCTGTA  1073

seq1  TGAGCTCTGGAATTC  1115
      |||||||||||||||
seq2  TGAGCTCTGGAATTC  1088