BAC Information

Click to search

BAC

Clone NameB6Ng01-155I17
Chromosome3 (Build37)4 (Build37)
Map Location 140,854,501 - 140,855,19629,969,818 - 29,969,912
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC621343, 4930590L14Rik
Downstream genePdha2, Unc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155I17.bB6Ng01-155I17.g
ACCDH950297DH950298
length966927
definitionDH950297|Mus musculus domesticus DNA, BAC clone: B6Ng01-155I17, 5' end.DH950298|Mus musculus domesticus DNA, BAC clone: B6Ng01-155I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,854,501 - 140,855,196)(29,969,818 - 29,969,912)
sequence
gaattctattggcaatgttaatgggtagccctaaagaacactgaaaagaa
acagtaaataaaaaattaaagcaattaagaataaatgtgtaagtaaaata
gtctgaattcacttgtgctgccaaattacttcttaattaaaattatgatc
aatcaactgtaacataaaactcaaagttacagtagttcattcaagaaaaa
atttatttcactttgacccagtattgacagactactaaacttactctgag
tatgccctctcattttgaatgtataaaacaggactctatttgagtagcta
aatcttggccaatcatagcagcttaccctttctgaatcacagctgatcgg
cccatgttcaaatgcggcaaacagcaagttgtgtaacccatcaccccctg
tgtgtttcacttccctttactgtctataaatgcgacctcatttggaagca
gaaagaaatgggattcttttcttgttcagatggctgcctggttcataaat
tattcacagaccattgctcaattggtgtatgctacatttaatttttcttt
atgtgtatgtttgtgtgtgttcatgcttgcttgtgtgcatgtgtgcatat
tggtgtacatgtatgtgtgccagtggatggaggtgagaagtcaattcctt
aatgtcttcagcaaccatagccttcatttttctggtgacagtctcactaa
atctggagctcattggttctgatagaatgaatggttagaaatgcccagga
atctgcccacatccttccctccagccctgagaatacaatcctgactgttg
ttggtggtgattttttgtttgtttgtttttaatttattttgtctgatgac
aataatgattttggccatgttcaaaagaagtaaaaataaaaaatgaccaa
gaagtatcattaagtgttcagcatctttaggacttggaaaaaggaaatta
aataacttcagacttt
gaattctcacctgaggaatacctaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagac
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgatggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgctagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaagatccagcaatacctcttctgggc
atatatccagaagatgttccaaccagtaagaaggacacatgctccactat
gttcatagcagccttataatagccagaagctggaaagaacccaggtgtgc
ctcaacagaggaatgaatacagaaaatgtggtacatttacacaatggagt
actactcagctattaaaaagaatgaatttatgaaattcctaggcaaatgg
attgacctggagggcatcatcctgagtgaggtaacccaatcacaaaggac
ctttcacaatatgtactcactgataagtggatattagcccagaaacttag
gatacccaagatataagatacaatttgctaaacacattaaactcaagaga
acgaagaccaaagtgtggacactttgccccttcttagaataggaaacaaa
acacctatggaaggagttacatagacacaatttggtagtgtgacaaaagg
atggaccaactcgtgattgccatatccagagatccatcccatgatcagct
tctaaacactgacaccattgcataaactagcaagattttgctgaaaggac
ccagatattgctgtctcttgtgagactatgccagggcctagcaaacacag
aagtggatgctcacagtcagctattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140854501_140855196
seq2: B6Ng01-155I17.b_43_738 (reverse)

seq1  TGAGACTGTCACCAGAAAAATGAAGGCTATGGTTGCTGAAGACATTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGTCACCAGAAAAATGAAGGCTATGGTTGCTGAAGACATTAAGG  50

seq1  AATTGACTTCTCACCTCCATCCACTGGCACACATACATGTACACCAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTTCTCACCTCCATCCACTGGCACACATACATGTACACCAATAT  100

seq1  GCACACATGCACACAAGCAAGCATGAACACACACAAACATACACATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATGCACACAAGCAAGCATGAACACACACAAACATACACATAAAG  150

seq1  AAAAATTAAATGTAGCATACACCAATTGAGCAATGGTCTGTGAATAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAATGTAGCATACACCAATTGAGCAATGGTCTGTGAATAATTT  200

seq1  ATGAACCAGGCAGCCATCTGAACAAGAAAAGAATCCCATTTCTTTCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCAGGCAGCCATCTGAACAAGAAAAGAATCCCATTTCTTTCTGCT  250

seq1  TCCAAATGAGGTCGCATTTATAGACAGTAAAGGGAAGTGAAACACACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGAGGTCGCATTTATAGACAGTAAAGGGAAGTGAAACACACAGG  300

seq1  GGGTGATGGGTTACACAACTTGCTGTTTGCCGCATTTGAACATGGGCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGGGTTACACAACTTGCTGTTTGCCGCATTTGAACATGGGCCGA  350

seq1  TCAGCTGTGATTCAGAAAGGGTAAGCTGCTATGATTGGCCAAGATTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTGATTCAGAAAGGGTAAGCTGCTATGATTGGCCAAGATTTAGC  400

seq1  TACTCAAATAGAGTCCTGTTTTATACATTCAAAATGAGAGGGCATACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAATAGAGTCCTGTTTTATACATTCAAAATGAGAGGGCATACTCA  450

seq1  GAGTAAGTTTAGTAGTCTGTCAATACTGGGTCAAAGTGAAATAAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGTTTAGTAGTCTGTCAATACTGGGTCAAAGTGAAATAAATTTTT  500

seq1  TCTTGAATGAACTACTGTAACTTTGAGTTTTATGTTACAGTTGATTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATGAACTACTGTAACTTTGAGTTTTATGTTACAGTTGATTGATC  550

seq1  ATAATTTTAATTAAGAAGTAATTTGGCAGCACAAGTGAATTCAGACTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTAATTAAGAAGTAATTTGGCAGCACAAGTGAATTCAGACTATT  600

seq1  TTACTTACACATTTATTCTTAATTGCTTTAATTTTTTATTTACTGTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACACATTTATTCTTAATTGCTTTAATTTTTTATTTACTGTTTCT  650

seq1  TTTCAGTGTTCTTTAGGGCTACCCATTAACATTGCCAATAGAATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTTCTTTAGGGCTACCCATTAACATTGCCAATAGAATTC  696

seq1: chr4_29969818_29969912
seq2: B6Ng01-155I17.g_701_794 (reverse)

seq1  TGTCTCTGTAACTCCTTCCTTGGGTGTTTTGTTCCCAATTCTAAGAAGGG  50
      ||||| ||||||||||||| | ||||||||||| || |||||||||||||
seq2  TGTCTATGTAACTCCTTCCATAGGTGTTTTGTTTCCTATTCTAAGAAGGG  50

seq1  GCAAAGTGTCCACACTTTGGTCTTCATTCTTCTTGAGTTTCATGT  95
      ||||||||||||||||||||||||| ||| |||||||||| ||||
seq2  GCAAAGTGTCCACACTTTGGTCTTCGTTC-TCTTGAGTTTAATGT  94