BAC Information

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BAC

Clone NameB6Ng01-155N16
Chromosome3 (Build37)
Map Location 40,602,166 - 40,709,806
singlet/doubletdoublet
Overlap genePlk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Upstream geneLOC100041458, LOC100040882, Intu, Slc25a31, Hspa4l
Downstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155N16.bB6Ng01-155N16.g
ACCDH950517DH950518
length1,1881,138
definitionDH950517|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N16, 5' end.DH950518|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,602,166 - 40,603,385)(40,708,662 - 40,709,806)
sequence
gaattcaaggccagcctgaggtgcatagcatgaccctgagtcataataat
cttatttgcctattaagacactgcaagggaaattctaatatgccagtgtg
cttgaaattagaattctagaatgttaaatcatgttgaaaattgagagtgc
ttctatgaatgtaaacattccttaaactacaaatgaatccattaaattgc
aggtttttgtttttgatgtgcaatcattcctgtgtgtacgtaaattacgt
gttcattataaagtatcttcacacaagctccatccggcaggcacggtgct
ttgttttcaaacagctttgagaaagttctgtacatgagatcagctttttt
gtttgtagattttatttttataacgtgagtttatgtgagtataggtttgt
gtacatgagtgctatgtcgataggagccagaaggtggcatcagagcccct
ggacgtggataacaggaggctagctgacagcattgagtactgataggcaa
atatggctctctcccacagcagctaggtctcactcactatgtcggtatct
cctacccctgagatgtgcacagtgtctgaaaagcatgaaacttgtgaagt
gatgccttgcttgcaggataacgtgttcatttaaatatgtgtggaggttg
gccttaattgtctcaaggatactgcagccaaagacaaaaaggtcctaaat
gaggacctcactcagcatagaaccttttaaaagtgcccgctagcctattc
ctcttattcctaactataaattgcccttggagacacaggcccccactaag
acgactcatctttgttgatagaccccctgaccacccaggtgccatcatct
ctgatttgctgtctttccaaatgaatctttccttgcctcacttcttgtcc
tggaatcactggcatttggggatagcaatctagacctggattggaacact
attagagttgagataaaacacagacacagagagacacactattgagatct
tcagaaaacagtcactactttggatttttttgcatctgattaaaaatctc
aaaacaattagctaaaagcaaaccctgtcgattatttactagcactatgt
aagatcatacccctactttcttcaaacttttgagaaaatgactagctagt
cactcaattgctccaataatggaaattggtagccaggt
gaattcaaagagtctgttaggaaacatttttttttaaataaaaagataaa
ccttttatgttaactattagacctactatgttatgagtgatgaacagtga
ttaaaattagaaaattcaattaagaggtcttgtgtaatttagctttcatc
attaatagaaaagggtactttttcttctctcttttaggaatgggaaactt
ctctcaagaaatatgagaaacaaaattgttcagaattaaaacatttaaga
ttcagaatgaacggagtcaatcctgaaaataatttttctcaggatcaggt
tttgtcatgaggtccagcatattccagtttcacagtcactgaaaattgaa
gttacccaagaaaatcagagcctggaaaccacacacgacttcacacagga
tagtaaagagtgatgctaaaaaactagtttgtacccaagtcatgatgcta
tatgctaaagtgtacaaatataagaaagaggataaaagcaaaacttttta
tgaagctcaatatttaatttcatcaataagctactttagatttgaagcta
caatatattataactaaaataaaatgttaaatgtgtattaaaaaagaaat
ttaaaaataagcattcaaggctggagagatggtttagtaactcagagcac
ttgtggctcttgcagaatacccaggttggttctcaggacccatgtggtaa
ttcatgatcatgcacaactccagttcctggggatcctgttaccactctaa
tctccacaagcacaaggcacacaggtggtacacaaacacttaaacatgca
ggcaggtactcatacacataaataaacagtcaagcattcatgaaacatac
acacgcacacacacacacacacacacacacacacacactacctcttgagg
tcttctggccctccccatcctctgatgaaaagttttgtgagaagaagtct
ccggtatagatatctaacttgcttacacccatgagtgccaacagcatcta
gaagtaaaatttaaaattactttaaaaatacttttacttgcccacaggca
gcaattttctaccacttatttgaatatcaggcaaaataaagactgacggt
aaatctttgtaaaaatataggagattgaagacctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40602166_40603385
seq2: B6Ng01-155N16.b_44_1231

seq1  GAATTCAAGGCCAGCCTGAGGTGCATAGCATGACCCTGAGTCATAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGAGGTGCATAGCATGACCCTGAGTCATAATAAT  50

seq1  CTTATTTGCCTATTAAGACACTGCAAGGGAAATTCTAATATGCCAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGCCTATTAAGACACTGCAAGGGAAATTCTAATATGCCAGTGTG  100

seq1  CTTGAAATTAGAATTCTAGAATGTTAAATCATGTTGAAAATTGAGAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATTAGAATTCTAGAATGTTAAATCATGTTGAAAATTGAGAGTGC  150

seq1  TTCTATGAATGTAAACATTCCTTAAACTACAAATGAATCCATTAAATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAATGTAAACATTCCTTAAACTACAAATGAATCCATTAAATTGC  200

seq1  AGGTTTTTGTTTTTGATGTGCAATCATTCCTGTGTGTACGTAAATTACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTGTTTTTGATGTGCAATCATTCCTGTGTGTACGTAAATTACGT  250

seq1  GTTCATTATAAAGTATCTTCACACAAGCTCCATCCGGCAGGCACGGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTATAAAGTATCTTCACACAAGCTCCATCCGGCAGGCACGGTGCT  300

seq1  TTGTTTTCAAACAGCTTTGAGAAAGTTCTGTACATGAGATCAGCTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAAACAGCTTTGAGAAAGTTCTGTACATGAGATCAGCTTTTTT  350

seq1  GTTTGTAGATTTTATTTTTATAACGTGAGTTTATGTGAGTATAGGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAGATTTTATTTTTATAACGTGAGTTTATGTGAGTATAGGTTTGT  400

seq1  GTACATGAGTGCTATGTCGATAGGAGCCAGAAGGTGGCATCAGAGCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGAGTGCTATGTCGATAGGAGCCAGAAGGTGGCATCAGAGCCCCT  450

seq1  GGACGTGGATAACAGGAGGCTAGCTGACAGCATTGAGTACTGATAGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGGATAACAGGAGGCTAGCTGACAGCATTGAGTACTGATAGGCAA  500

seq1  ATATGGCTCTCTCCCACAGCAGCTAGGTCTCACTCACTATGTCGGTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTCTCTCCCACAGCAGCTAGGTCTCACTCACTATGTCGGTATCT  550

seq1  CCTACCCCTGAGATGTGCACAGTGTCTGAAAAGCATGAAACTTGTGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCTGAGATGTGCACAGTGTCTGAAAAGCATGAAACTTGTGAAGT  600

seq1  GATGCCTTGCTTGCAGGATAACGTGTTCATTTAAATATGTGTGGAGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTTGCTTGCAGGATAACGTGTTCATTTAAATATGTGTGGAGGTTG  650

seq1  GCCTTAATTGTCTCAAGGATACTGCAGCCAAAGACAAAAAGGTCCTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATTGTCTCAAGGATACTGCAGCCAAAGACAAAAAGGTCCTAAAT  700

seq1  GAGGACCTCACTCAGCATAGAACCTTTTAAAAGTGCCCGCTAGCCTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTCACTCAGCATAGAACCTTTTAAAAGTGCCCGCTAGCCTATTC  750

seq1  CTCTTATTCCTAACTATAAATTGCCCTTGGAGACACAGGCCCCCACTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTCCTAACTATAAATTGCCCTTGGAGACACAGGCCCCCACTAAG  800

seq1  ACGACTCATCTTTGTTGATAGACCCCCTGACCACCCAGGTGCCATCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTCATCTTTGTTGATAGACCCCCTGACCACCCAGGTGCCATCATCT  850

seq1  CTGATTTGCTGTCTTTCCAAATGAATCTTTCCTTGCCTCACTTCTTGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGCTGTCTTTCCAAATGAATCTTTCCTTGCCTCACTTCTTGTCC  900

seq1  TGGAATCACTGGCATTTGGGGATAGCAATCTAGACCTGGATTGGAACACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCACTGGCATTTGGGGATAGCAATCTAGACCTGGATTGGAACACT  950

seq1  ATTAGGAGTTGAGATAAAACACAGACACAGAGAGAACACACTATTGAGGA  1000
      |||| ||||||||||||||||||||||||||||| |||||||||||| ||
seq2  ATTA-GAGTTGAGATAAAACACAGACACAGAGAG-ACACACTATTGA-GA  997

seq1  TCTTCAGAAAACAAGTCACTACTTTGGATCTTTTTGCATCTGATTAAAAA  1050
      |||||||||||| |||||||||||||||| ||||||||||||||| ||||
seq2  TCTTCAGAAAAC-AGTCACTACTTTGGATTTTTTTGCATCTGATT-AAAA  1045

seq1  ATCTCAAAACAATTAGGCTAAAAAGCAAACCCCTGTCGGATTATTTACTA  1100
      ||||||||||||||| ||| ||||||||| ||||||| ||||||||||||
seq2  ATCTCAAAACAATTA-GCT-AAAAGCAAA-CCCTGTC-GATTATTTACTA  1091

seq1  GCAACTAATGTAAAGATCCATACCACTACTCTTTCTTCAAAACATTTTTA  1150
      || ||| |||| ||||| |||||| |||  |||||||||||     ||| 
seq2  GC-ACT-ATGT-AAGAT-CATACCCCTA--CTTTCTTCAAA----CTTTT  1131

seq1  GAGGAAAATGACTTAGCCTAGGTCACTCACATATGGCTCAAAATAAATTT  1200
      || ||||||||| ||| ||| ||||||||   || ||||  |||||   |
seq2  GA-GAAAATGAC-TAG-CTA-GTCACTCA---ATTGCTC-CAATAA---T  1170

seq1  GTAAGATTGGTAGCCCAGGT  1220
      | || |||||||| ||||||
seq2  GGAA-ATTGGTAG-CCAGGT  1188

seq1: chr3_40708662_40709806
seq2: B6Ng01-155N16.g_67_1204 (reverse)

seq1  TCCCAGTTCTTCTAAATCTCCTATATTTTTACAAAGATTTACTCGTCAGT  50
      |||||| |||||  |||||||||||||||||||||||||||| |||||||
seq2  TCCCAGGTCTTC--AATCTCCTATATTTTTACAAAGATTTAC-CGTCAGT  47

seq1  CTTTAATTTTGCCTGATATTCAAATAAGTGGTTAGAAAATTGCTGCCTTG  100
      |||| |||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CTTT-ATTTTGCCTGATATTCAAATAAGTGG-TAGAAAATTGCTGCC-TG  94

seq1  TGGGCAAGTAAAAGTA-TTTTAAAGTAATTTTAAATTTTACTTCTAGATG  149
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGGCAAGTAAAAGTATTTTTAAAGTAATTTTAAATTTTACTTCTAGATG  144

seq1  CTGTTTGGCACTCATGGGTGTAAGCAAGTTAGATATTCTATACCGGAGAC  199
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTG-TTGGCACTCATGGGTGTAAGCAAGTTAGATA-TCTATACCGGAGAC  192

seq1  TTCTTCTCACAAAACTTTTCATCAGAGGATGGGGAAGGCCAGAAGACCTC  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTTCTCACAAAACTTTTCATCAGAGGATGGGGAGGGCCAGAAGACCTC  242

seq1  AAGAGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTAT  292

seq1  GTTTCATGAATGCTTGACTGTTTATTTATGTGTATGAGTACCTGCCTGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGAATGCTTGACTGTTTATTTATGTGTATGAGTACCTGCCTGCA  342

seq1  TGTTTAAGTGTTTGTGTACCACCTGTGTGCCTTGTGCTTGTGGAGATTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGTGTTTGTGTACCACCTGTGTGCCTTGTGCTTGTGGAGATTAG  392

seq1  AGTGGTAACAGGATCCCCAGGAACTGGAGTTGTGCATGATCATGAATTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAACAGGATCCCCAGGAACTGGAGTTGTGCATGATCATGAATTAC  442

seq1  CACATGGGTCCTGAGAACCAACCTGGGTATTCTGCAAGAGCCACAAGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGTCCTGAGAACCAACCTGGGTATTCTGCAAGAGCCACAAGTGC  492

seq1  TCTGAGTTACTAAACCATCTCTCCAGCCTTGAATGCTTATTTTTAAATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTACTAAACCATCTCTCCAGCCTTGAATGCTTATTTTTAAATTT  542

seq1  CTTTTTTAATACACATTTAACATTTTATTTTAGTTATAATATATTGTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAATACACATTTAACATTTTATTTTAGTTATAATATATTGTAGC  592

seq1  TTCAAATCTAAAGTAGCTTATTGATGAAATTAAATATTGAGCTTCATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCTAAAGTAGCTTATTGATGAAATTAAATATTGAGCTTCATAAA  642

seq1  AAGTTTTGCTTTTATCCTCTTTCTTATATTTGTACACTTTAGCATATAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGCTTTTATCCTCTTTCTTATATTTGTACACTTTAGCATATAGC  692

seq1  ATCATGACTTGGGTACAAACTAGTTTTTTAGCATCACTCTTTACTATCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACTTGGGTACAAACTAGTTTTTTAGCATCACTCTTTACTATCCT  742

seq1  GTGTGAAGTCGTGTGTGGTTTCCAGGCTCTGATTTTCTTGGGTAACTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGTCGTGTGTGGTTTCCAGGCTCTGATTTTCTTGGGTAACTTCA  792

seq1  ATTTTCAGTGACTGTGAAACTGGAATATGCTGGACCTCATGACAAAACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTGACTGTGAAACTGGAATATGCTGGACCTCATGACAAAACCT  842

seq1  GATCCTGAGAAAAATTATTTTCAGGATTGACTCCGTTCATTCTGAATCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAGAAAAATTATTTTCAGGATTGACTCCGTTCATTCTGAATCTT  892

seq1  AAATGTTTTAATTCTGAACAATTTTGTTTCTCATATTTCTTGAGAGAAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTAATTCTGAACAATTTTGTTTCTCATATTTCTTGAGAGAAGT  942

seq1  TTCCCATTCCTAAAAGAGAGAAGAAAAAGTACCCTTTTCTATTAATGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTCCTAAAAGAGAGAAGAAAAAGTACCCTTTTCTATTAATGATG  992

seq1  AAAGCTAAATTACACAAGACCTCTTAATTGAATTTTCTAATTTTAATCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAATTACACAAGACCTCTTAATTGAATTTTCTAATTTTAATCAC  1042

seq1  TGTTCATCACTCATAACATAGTAGGTCTAATAGTTAACATAAAAGGTTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCACTCATAACATAGTAGGTCTAATAGTTAACATAAAAGGTTTA  1092

seq1  TCTTTTTATTTAAAAAAAAATGTTTCCTAACAGACTCTTTGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATTTAAAAAAAAATGTTTCCTAACAGACTCTTTGAATTC  1138