BAC Information

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BAC

Clone NameB6Ng01-155O10
Chromosome3 (Build37)
Map Location 88,894,168 - 89,029,069
singlet/doubletdoublet
Overlap geneRusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3
Upstream geneIqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l
Downstream geneMuc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155O10.bB6Ng01-155O10.g
ACCDH950548DH950549
length1,125971
definitionDH950548|Mus musculus domesticus DNA, BAC clone: B6Ng01-155O10, 5' end.DH950549|Mus musculus domesticus DNA, BAC clone: B6Ng01-155O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,027,943 - 89,029,069)(88,894,168 - 88,895,137)
sequence
gaattctctggaattccacacagttgaactccagagcacatgtctgggta
gggaagctcagagacagtgggggccctgaggtcgggcaagaacagcttta
ggaaagtcactggggtggggaaagtgggcagctggggataccttgagctg
aagccctggttgggccactgctcggaaaggcgtggcctgccagtaggtct
gctccgtctgtttccacatgaccacatagaagcggccactgtcctggtaa
ctgaagaggaagcccgcatagtcatcatcagtgactgtgttcacgtggaa
ggtgccttcaaagtccacgccattaaaggccgtgtaccctggagtgggaa
caggaggagtgttaggggcagtacagctgccaggcggcctactgtgggtg
ggtgtgggcgggcgcagagatgcctgctgcatacaggactaggaaggccc
tgcaaatgctccatctaccctccacaggagccttccctttggaaacgact
gagccgggtgtcctttacataccaactgcaagacccgggtcactgttcat
agtctgaacaatttccatgccctggggttgataaaggaagagaaaaagcc
ctgatccaggtgcacagtgacaccccaggtcccaacaggcagccaggtct
gacagcgcctgcccagcctactgccccgcatacctggttgagcactaccc
agtttggatcgatctgggcgtcaccctcgggatccaggatcacagtctga
taggcccggaagtctgtgagggtaacttctgcactctccgggcacacatc
cagagggtcaaccactgcgtcattgtcaaagtcatcttcacagacatcac
ccacaccgttgcctgcaaagagcgactgtcaccgcccggttcttcctgag
tcctccctacccttccatcctccactccctccagtagcctgtctcctgag
caaaacctgatcagcttaagcatctccgggacttccagtcttaccatctg
agtcttctgattagattggtacaagcgacagttattcaggccgggaggaa
tgttaatctgggaaccggtcattgtcatcgtcccgtccacactcatctcc
aagccgtcattgttctggagtccag
gaattccacagagggtgtgactccaggtccctaacaatggacctcttaag
ctgggcagaccaggtggagcccgctgtgcagcgaggggagcagtcacgct
cctcacccccagcaaggccaggctccccgggactaatgagcccgctagga
gcctgcacctagccaggcacccccagataaaggttggcccagtactggaa
ggacagcgagccgaggcgcggcccgcggggctggcccgggtccgtcttac
gttgcctgggcggaggtggtggccttctggtccagcgaggggcggtcggc
ggacacggtggtgttggcagcgggggggcgggaacctggcggggtagggg
cgccgcggcggggaaggtgctacttctgggaaagagcggggatagcagca
gtgccagttcggggctggccaggcaaggcaaggccccccgagtgggagga
gaataagctcccactggggataggcgcacaggcaggagctgctcctccgg
gggactcgctgcccccagcagccggagccgggaattggaccacccggtca
gaggcgtaaagagcagggacccgggtgcgcccgcgcccccaccctccaac
agggggcgcccgtcggccgagaaccggaaaaccgggggccgagggaatag
cgagggaccggctgcaggcgggattggcggggccaggtgcagagggggag
ggcagtgcggccggcagccaggcaaggaggggcgggaaagagaggagcaa
agagttagtcccttcactccaagatccacccagtttccctttccagagcg
cgccctggagatggggcgggaaggacactgcaaagaggggaccaggggcg
ggctcaggaacccgcccttctggcgggttcggctcttctttaccaacgac
gtgcgcgcgcggttcctccgggctcctgcaaggcggattcctctttactc
agcccggggctggcgccctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89027943_89029069
seq2: B6Ng01-155O10.b_46_1170 (reverse)

seq1  CTGGACT-CAG-ACAATGACGGGCTTGGAGATGAGTGTGACGGGGACGAT  48
      ||||||| ||| |||||||| ||||||||||||||||||   ||||||||
seq2  CTGGACTCCAGAACAATGAC-GGCTTGGAGATGAGTGTGGACGGGACGAT  49

seq1  GACAATGACGGTGTCCCAGATT-ACATTCCTCCCGGGCCTG-ATAACTGT  96
      ||||||||| |  ||||||||| ||||||||||| |||||| ||||||||
seq2  GACAATGACCGGTTCCCAGATTAACATTCCTCCC-GGCCTGAATAACTGT  98

seq1  CGCCTGGTACCCAATCCTAATCAGAAGGACTCAGATGGTAAGACTGG-AG  145
      || || ||| ||||| |||||||||| |||||||||||||||||||| ||
seq2  CG-CTTGTA-CCAAT-CTAATCAGAA-GACTCAGATGGTAAGACTGGAAG  144

seq1  TCCCGGAGATGCTTAAGCTGATCAGGTTTTGCTCAGGAGACAGGCCTACT  195
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCCGGAGATGCTTAAGCTGATCAGGTTTTGCTCAGGAGACAGG-CTACT  193

seq1  GGAGGGAGTGGAGGATGGAAGGGTAGGGAGGACTCAGGAAGAACCGGGCG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGTGGAGGATGGAAGGGTAGGGAGGACTCAGGAAGAACCGGGCG  243

seq1  GTGACAGTCGCTCTTTGCAGGCAACGGTGTGGGTGATGTCTGTGAAGATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTCGCTCTTTGCAGGCAACGGTGTGGGTGATGTCTGTGAAGATG  293

seq1  ACTTTGACAATGACGCAGTGGTTGACCCTCTGGATGTGTGCCCGGAGAGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACAATGACGCAGTGGTTGACCCTCTGGATGTGTGCCCGGAGAGT  343

seq1  GCAGAAGTTACCCTCACAGACTTCCGGGCCTATCAGACTGTGATCCTGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTTACCCTCACAGACTTCCGGGCCTATCAGACTGTGATCCTGGA  393

seq1  TCCCGAGGGTGACGCCCAGATCGATCCAAACTGGGTAGTGCTCAACCAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGGGTGACGCCCAGATCGATCCAAACTGGGTAGTGCTCAACCAGG  443

seq1  TATGCGGGGCAGTAGGCTGGGCAGGCGCTGTCAGACCTGGCTGCCTGTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGGGGCAGTAGGCTGGGCAGGCGCTGTCAGACCTGGCTGCCTGTTG  493

seq1  GGACCTGGGGTGTCACTGTGCACCTGGATCAGGGCTTTTTCTCTTCCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGGGTGTCACTGTGCACCTGGATCAGGGCTTTTTCTCTTCCTTT  543

seq1  ATCAACCCCAGGGCATGGAAATTGTTCAGACTATGAACAGTGACCCGGGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCCCAGGGCATGGAAATTGTTCAGACTATGAACAGTGACCCGGGT  593

seq1  CTTGCAGTTGGTATGTAAAGGACACCCGGCTCAGTCGTTTCCAAAGGGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTTGGTATGTAAAGGACACCCGGCTCAGTCGTTTCCAAAGGGAA  643

seq1  GGCTCCTGTGGAGGGTAGATGGAGCATTTGCAGGGCCTTCCTAGTCCTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGTGGAGGGTAGATGGAGCATTTGCAGGGCCTTCCTAGTCCTGT  693

seq1  ATGCAGCAGGCATCTCTGCGCCCGCCCACACCCACCCACAGTAGGCCGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCAGGCATCTCTGCGCCCGCCCACACCCACCCACAGTAGGCCGCC  743

seq1  TGGCAGCTGTACTGCCCCTAACACTCCTCCTGTTCCCACTCCAGGGTACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTGTACTGCCCCTAACACTCCTCCTGTTCCCACTCCAGGGTACA  793

seq1  CGGCCTTTAATGGCGTGGACTTTGAAGGCACCTTCCACGTGAACACAGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTTTAATGGCGTGGACTTTGAAGGCACCTTCCACGTGAACACAGTC  843

seq1  ACTGATGATGACTATGCGGGCTTCCTCTTCAGTTACCAGGACAGTGGCCG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGATGACTATGCGGGCTTCCTCTTCAGTTACCAGGACAGTGGCCG  893

seq1  CTTCTATGTGGTCATGTGGAAACAGACGGAGCAGACCTACTGGCAGGCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGTGGTCATGTGGAAACAGACGGAGCAGACCTACTGGCAGGCCA  943

seq1  CGCCTTTCCGAGCAGTGGCCCAACCAGGGCTTCAGCTCAAGGTATCCCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTCCGAGCAGTGGCCCAACCAGGGCTTCAGCTCAAGGTATCCCCA  993

seq1  GCTGCCCACTTTCCCCACCCCAGTGACTTTCCTAAAGCTGTTCTTGCCCG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCACTTTCCCCACCCCAGTGACTTTCCTAAAGCTGTTCTTGCCCG  1043

seq1  ACCTCAGGGCCCCCACTGTCTCTGAGCTTCCCTACCCAGACATGTGCTCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGGCCCCCACTGTCTCTGAGCTTCCCTACCCAGACATGTGCTCT  1093

seq1  GGAGTTCAACTGTGTGGAATTCCAGAGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  GGAGTTCAACTGTGTGGAATTCCAGAGAATTC  1125

seq1: chr3_88894168_88895137
seq2: B6Ng01-155O10.g_68_1038

seq1  GAATTCCACAGAGGGTGTGACTCCAGGTCCCTAACAATGGACCTCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAGGGTGTGACTCCAGGTCCCTAACAATGGACCTCTTAAG  50

seq1  CTGGGCAGACCAGGTGGAGCCCGCTGTGCAGCGAGGGGAGCAGTCACGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGACCAGGTGGAGCCCGCTGTGCAGCGAGGGGAGCAGTCACGCT  100

seq1  CCTCACCCCCAGCAAGGCCAGGCTCCCCGGGACTAATGAGCCCGCTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCCCAGCAAGGCCAGGCTCCCCGGGACTAATGAGCCCGCTAGGA  150

seq1  GCCTGCACCTAGCCAGGCACCCCCAGATAAAGGTTGGCCCAGTACTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCACCTAGCCAGGCACCCCCAGATAAAGGTTGGCCCAGTACTGGAA  200

seq1  GGACAGCGAGCCGAGGCGCGGCCCGCGGGGCTGGCCCGGGTCCGTCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCGAGCCGAGGCGCGGCCCGCGGGGCTGGCCCGGGTCCGTCTTAC  250

seq1  GTTGCCTGGGCGGAGGTGGTGGCCTTCTGGTCCAGCGAGGGGCGGTCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTGGGCGGAGGTGGTGGCCTTCTGGTCCAGCGAGGGGCGGTCGGC  300

seq1  GGACACGGTGGTGTTGGCAGCGGGGGGGCGGGAACCTGGCGGGGTAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGGTGGTGTTGGCAGCGGGGGGGCGGGAACCTGGCGGGGTAGGGG  350

seq1  CGCCGCGGCGGGGAAGGTGCTACTTCTGGGAAAGAGCGGGGATAGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCGGCGGGGAAGGTGCTACTTCTGGGAAAGAGCGGGGATAGCAGCA  400

seq1  GTGCCAGTTCGGGGCTGGCCAGGCAAGGCAAGGCCCCCCGAGTGGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGTTCGGGGCTGGCCAGGCAAGGCAAGGCCCCCCGAGTGGGAGGA  450

seq1  GAATAAGCTCCCACTGGGGATAGGCGCACAGGCAGGAGCTGCTCCTCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCTCCCACTGGGGATAGGCGCACAGGCAGGAGCTGCTCCTCCGG  500

seq1  GGGACTCGCTGCCCCCAGCAGCCGGAGCCGGGAATTGGACCACCCGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCGCTGCCCCCAGCAGCCGGAGCCGGGAATTGGACCACCCGGTCA  550

seq1  GAGGCGTAAAGAGCAGGGACCCGGGTGCGCCCGCGCCCCCACCCTCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGTAAAGAGCAGGGACCCGGGTGCGCCCGCGCCCCCACCCTCCAAC  600

seq1  AGGGGGCGCCCGTCGGCCGAGAACCGGAAAACCGGGGGCCGAGGGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCGCCCGTCGGCCGAGAACCGGAAAACCGGGGGCCGAGGGAATAG  650

seq1  CGAGGGACCGGCTGCAGGCGGGATTGGCGGGGCCAGGTGCAGAGGGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGACCGGCTGCAGGCGGGATTGGCGGGGCCAGGTGCAGAGGGGGAG  700

seq1  GGCAGTGCGGCCGGCAGCCAGGCAAGGAGGGGCGGGAAAGAGAGGAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGCGGCCGGCAGCCAGGCAAGGAGGGGCGGGAAAGAGAGGAGCAA  750

seq1  AGAGTTAGTCCCTTCACTCCAAGATCCACCCAGTTTCCCTTTCCCAGAGC  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAGTTAGTCCCTTCACTCCAAGATCCACCCAGTTTCCCTTT-CCAGAGC  799

seq1  GCGCCCTGGAGATGGGGCGGGAAGGACACTGCAGAAGGAGGGGACCAGGG  850
      ||||||||||||||||||||||||||||||||  || |||||||||||||
seq2  GCGCCCTGGAGATGGGGCGGGAAGGACACTGC--AAAGAGGGGACCAGGG  847

seq1  GCGGGCTCAGG-ACCCGCCCTCCT-GCGGG-TCCGCGCTTC-TTACCCAC  896
      ||||||||||| ||||||||| || ||||| || || |||| ||||| ||
seq2  GCGGGCTCAGGAACCCGCCCTTCTGGCGGGTTCGGCTCTTCTTTACCAAC  897

seq1  GGCGTGCGCGCGCGGTTCCTCC-GGCTCCTGCGAGGCGGATGCCTCCTCA  945
      | |||||||||||||||||||| ||||||||| |||||||| |||| | |
seq2  GACGTGCGCGCGCGGTTCCTCCGGGCTCCTGCAAGGCGGATTCCTCTTTA  947

seq1  C-CAGCCCGGGGGCTGGCCGCCCTGC  970
      | |||||| |||||||| ||||||||
seq2  CTCAGCCC-GGGGCTGG-CGCCCTGC  971