BAC Information

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BAC

Clone NameB6Ng01-155O21
Chromosome3 (Build37)
Map Location 11,238,384 - 11,239,484
singlet/doubletsinglet
Overlap genenone
Upstream gene1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
Downstream geneLOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155O21.bB6Ng01-155O21.g
ACCDH950570DH950571
length1,2301,091
definitionDH950570|Mus musculus domesticus DNA, BAC clone: B6Ng01-155O21, 5' end.DH950571|Mus musculus domesticus DNA, BAC clone: B6Ng01-155O21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagtcccattttttaatggggttatttgatt
ttctggagtccactttcttgagttctttatatatatattggatattagtc
ccctatccgatttgggataggtaaagatcctttcccaatctgttggtggt
ctttttgtcttattgacggtgtcttttgctttgcagaagctttgcaattt
tatgaggtcccatttattgattcttgatcttacagcacaagccattgctg
ttgtattcaggaatttttcccctgtacccatatcttcgaggcttttccct
actttctcctctataagtttcagtgtgggattgcaagcttgtacaaccac
tctggaaatcagtctggcggttcctcagaaaattggacatagtactacca
gaggatcccgcaatacctctcctgggcatatatccagaagatgtcccaac
cggtaagaagaacacatgctccactatgttcatagctgccttgtttataa
tagccagaagctggaaagaacccagatgcccctcaacagaggaatggata
cagaaaatgtggtacatttacacaatggaatactactcagctatttaaaa
gaatgaatttatgaaattcctaggcaaatggatggacctggagggtatca
tcctgagtgaggtaacccaatcacaaaggaactcgcacaatatgtactca
ttgataagtggatattagcccagaaacttaggatacccaagatataagat
acaacttgccaaacgcatgaaattcaagaagaacgaagaccaaagtgtgg
acactttaccctttcttagaaatgggagcaaaacacccatggaaggagtt
acagagacaaaatttggagctgtgatgaaaggatggaccatctagtgatt
gccatatgcaggatccatcccataatcagcttccaaatgctgacaccatt
gcatacactagcagattttcctgaaagatccagatatagctgtctctgtg
agactatgccagggctagcaaacacagaagtgatgatcacattcagctat
tgatggttcacacggcctccatgaggagctagagaaattacctaggagct
aaggactgcatcctataggtgaacaccatattgacttatcgtatcccggg
agctcttgtcctagctgcaatgtatcaaaaatggtctagtgcctcatcgt
cgaagaagagtctcaccgtggcatcgtgtg
gaattccttgaggttgctaatgccaattttacatgccactaacttttgta
aaagtgatctgactttgaagaagagaaggcacatattggtttttgatcag
ttttaagtgacatcagacttagtgttatttatatagcaacttatattctg
aactaagtagagttggaataaaaagtttttgagctaagagactttgaaca
ataaatgtgttagtatataatccattgacttgtacaagttataggtttct
aatgcattttaatatttctaatgaaggaacagacgatttttttttgtttt
tgttttttacttattcactttacttccctcccactgccccattcctcgtt
acccctcctacaatccttctgcctccccctttcccctttactttgactga
gtggcggcctccctgggtatccctccaccctagtatatcaggtatctgtg
aggctaggtgcatcctctcctactgaggccagacaaagtagtagcacagc
tagaagaacatatcctacaggctttggggagagctctgatgcagttttct
agggcacacatgaagatcaagctgcacgtctgctacacgtgagtggagag
gcctaggtctagcctgtgtatgttctttggttggtggttcagattttgag
agccccatggctctaggttagttgactttgttggtctgccaggaagagaa
gttttatttgatttaaccactgcagcaaaaacacatataaacttgtgatc
tggattatgttgtcacctaaaaggtgaatttgtaagctacagttagacct
aaaaggtaaatttgtaagctacagtgagcatgcattggcttcttatttta
gcagagtcttggggaagttgtacttcaacaaaattaagtctatttatatg
aatatggaactatacttcatataaattattatattgggacataatctgaa
taatatctatcatttttccatgaggtttaagtgcaaagtctaggaaatac
cattttatgtataattcatcactcatgccttctaattaaaatatcttaat
atttctgttattaatgaggaaagtggggcaccgagataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_11238384_11239484
seq2: B6Ng01-155O21.g_68_1158 (reverse)

seq1  TTTTATCTCTGTGCCCCACTTTCCTCAATAATAAACAGAAAATATT-AGA  49
      ||||||||| ||||||||||||||||| |||| ||||| ||||||| |||
seq2  TTTTATCTCGGTGCCCCACTTTCCTCATTAAT-AACAG-AAATATTAAGA  48

seq1  TATGTTAATTTTAGGAGGCATGAGTGATGAATTTATACATAAAATTGGTA  99
      ||| ||||  |||| |||||||||||||||| |||||||||||| |||||
seq2  TATTTTAA--TTAGAAGGCATGAGTGATGAA-TTATACATAAAA-TGGTA  94

seq1  TTTTCTTAGAACTTTTGCACTTAAACCTCATGGAAAAATGATTAGATATT  149
       |||| ||||   |||||||||||||||||||||||||||| ||||||||
seq2  -TTTCCTAGA--CTTTGCACTTAAACCTCATGGAAAAATGA-TAGATATT  140

seq1  ATTCAGATTATTGTCCAATATTAATAATTTATTATGAAGTATAGTTCAAT  199
      |||||||||||   |||||| |||||||||| ||||||||||||||| ||
seq2  ATTCAGATTATGTCCCAATA-TAATAATTTA-TATGAAGTATAGTTCCAT  188

seq1  ATTCATATAAATAGACTTAATTTTGTTGAAGTACAACTT-CCCAAGACTC  248
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTCATATAAATAGACTTAATTTTGTTGAAGTACAACTTCCCCAAGACTC  238

seq1  TGCTAAAATAAGAAGCCAATGCATGCTCACTGTAGCTTACAAATTTACCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATAAGAAGCCAATGCATGCTCACTGTAGCTTACAAATTTACCT  288

seq1  TTTAGGTCTAACTGTAGCTTACAAATTCACCTTTTAGGTGACAACATAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCTAACTGTAGCTTACAAATTCACCTTTTAGGTGACAACATAAT  338

seq1  CCAGATCACAAGTTTATATGTGTTTTTGCTGCAGTGGTTAAATCAAATAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCACAAGTTTATATGTGTTTTTGCTGCAGTGGTTAAATCAAATAA  388

seq1  AACTTCTCTTCCTGGCAGACCAACAAAGTCAACTAACCTAGAGCCATGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCTTCCTGGCAGACCAACAAAGTCAACTAACCTAGAGCCATGGG  438

seq1  GCTCTCAAAATCTGAACCACCAACCAAAGAACATACACAGGCTAGACCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAAAATCTGAACCACCAACCAAAGAACATACACAGGCTAGACCTA  488

seq1  GGCCTCTCCACTCACGTGTAGCAGACGTGCAGCTTGATCTTCATGTGTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCCACTCACGTGTAGCAGACGTGCAGCTTGATCTTCATGTGTGC  538

seq1  CCTAGAAAACTGCATCAGAGCTCTCCCCAAAGCCTGTAGGATATGTTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAACTGCATCAGAGCTCTCCCCAAAGCCTGTAGGATATGTTCTT  588

seq1  CTAGCTGTGCTACTACTTTGTCTGGCCTCAGTAGGAGAGGATGCACCTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGTGCTACTACTTTGTCTGGCCTCAGTAGGAGAGGATGCACCTAG  638

seq1  CCTCACAGATACCTGATATACTAGGGTGGAGGGATACCCAGGGAGGCCGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGATACCTGATATACTAGGGTGGAGGGATACCCAGGGAGGCCGC  688

seq1  CACTCAGTCAAAGTAAAGGGGAAAGGGGGAGGCAGAAGGATTGTAGGAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTCAAAGTAAAGGGGAAAGGGGGAGGCAGAAGGATTGTAGGAGG  738

seq1  GGTAACGAGGAATGGGGCAGTGGGAGGGAAGTAAAGTGAATAAGTAAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACGAGGAATGGGGCAGTGGGAGGGAAGTAAAGTGAATAAGTAAAAA  788

seq1  ACAAAAACAAAAAAAAATCGTCTGTTCCTTCATTAGAAATATTAAAATGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAAAAAAAATCGTCTGTTCCTTCATTAGAAATATTAAAATGC  838

seq1  ATTAGAAACCTATAACTTGTACAAGTCAATGGATTATATACTAACACATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAACCTATAACTTGTACAAGTCAATGGATTATATACTAACACATT  888

seq1  TATTGTTCAAAGTCTCTTAGCTCAAAAACTTTTTATTCCAACTCTACTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCAAAGTCTCTTAGCTCAAAAACTTTTTATTCCAACTCTACTTA  938

seq1  GTTCAGAATATAAGTTGCTATATAAATAACACTAAGTCTGATGTCACTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAATATAAGTTGCTATATAAATAACACTAAGTCTGATGTCACTTA  988

seq1  AAACTGATCAAAAACCAATATGTGCCTTCTCTTCTTCAAAGTCAGATCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATCAAAAACCAATATGTGCCTTCTCTTCTTCAAAGTCAGATCAC  1038

seq1  TTTTACAAAAGTTAGTGGCATGTAAAATTGGCATTAGCAACCTCAAGGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAAGTTAGTGGCATGTAAAATTGGCATTAGCAACCTCAAGGAA  1088

seq1  TTC  1101
      |||
seq2  TTC  1091