BAC Information

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BAC

Clone NameB6Ng01-156B23
Chromosome3 (Build37)
Map Location 36,206,850 - 36,351,415
singlet/doubletdoublet
Overlap geneAnxa5
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
Downstream gene1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B23.bB6Ng01-156B23.g
ACCDH950711DH950712
length1,158269
definitionDH950711|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B23, 5' end.DH950712|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,350,269 - 36,351,415)(36,206,850 - 36,207,118)
sequence
gaattcctaattaataacattgttatagcatatgtaaatcattgcttagg
gcttacctcattgaggctctgaacacagggatctgacagcaaggaggatg
gggtggggaggctctgcttggatagataacagctggtgaaagttacagct
ctttttagagggagaatctcttcagcaagtaaggacacacattctgttct
gtgttttctagtgtttgacaagtacatgaccatatcaggatttcagattg
aggaaaccattgatcgagagacctcggggaacttggagcagctgctcctg
gctgtcggtaggtgaattcacagtgtgtaatatttattcttatacgagtt
gctttcatccacttgaggctaaatctgaacataaccgtgtttcttcatgg
aaagtaggagaatgacatagcagtggagggagcaaactcctgagttttcc
tttgggaagtccgtgttggtgttctgaatacatggttatctggttattta
ccggattatatggaagcactaagaacattagtaggaatcgtcttaaagcc
acattaagaataatactatggccctctgatgtcttagacaccatcataga
ggtttgcaagcgtggcttgtcttcaatacccacagggctttagaatgctt
tgaatactcttctcacagctcattatactgactaagaagttattatctgg
ctagagataaatccgggtctttgatgtgacagaatatgggaagaggtttt
tttttccccaggttaaataatttggagtttcgattaagtgctcagaatga
ctggagaagtgaatttgcaggtggttatagtttttagatgctctccagat
tctgcaggcccaggttctggactcacatggtctgaaaggctgcctctgtc
tattctgagcatttgtgcaagaaccaactttaaaaagtagccttttcatc
tgagcacacagtcaatgagtagacacttgggctctttcatgatgaagaca
cacaagaacgtcaccgtgtatgagccacttaattaaaactccaaattatt
taacctgaaaacacctccaccttctttttcataccaaaacacacaaattt
gttttttcaagccgaagatcatttctcatacctgcctggaaaagactgcc
tttttgta
caatggcacacaatcacaggaactacctgccagtgggaaaatcacacccc
tgctagagcatgaggcaaatcagagtcagctgctgtggacaatctgaaac
agccccatgtcccatacctgggattaaaacaaaaccacattcccataata
ttcctgtggttgttttgttgttgttgttttggggtttgggtttttttttt
ttaatttataaccaaaattctcactacagatgtgtaattaatacacatat
aataaatggaattcaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36350269_36351415
seq2: B6Ng01-156B23.b_44_1201 (reverse)

seq1  TACAAAAA-GCAG-CTTCT-CAGGCAGAT-TGAGAAATGATCATCTGGCT  46
      |||||||| |||| ||| | ||||||| | |||||||||||| || ||||
seq2  TACAAAAAGGCAGTCTTTTCCAGGCAGGTATGAGAAATGATCTTC-GGCT  49

seq1  AG-AAAAACAAATGTGTGTG-TTTGGTATG--AAAGAAGGTG--GGTGTT  90
       | |||||||||| |||||| |||||||||  ||||||||||  ||||||
seq2  TGAAAAAACAAATTTGTGTGTTTTGGTATGAAAAAGAAGGTGGAGGTGTT  99

seq1  TTCAGGTTAAATAATTTGGAGTTTTAATTAAGT-GCTCATAACAACGGTG  139
      ||||||||||||||||||||||||||||||||| |||||||   ||||||
seq2  TTCAGGTTAAATAATTTGGAGTTTTAATTAAGTGGCTCATA--CACGGTG  147

seq1  ACGTTCTTGTGTGTCTTCATCATGAAAGAG-CCAAGTGTCTAACTCATTG  188
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  ACGTTCTTGTGTGTCTTCATCATGAAAGAGCCCAAGTGTCT-ACTCATTG  196

seq1  ACTGTGTGCTCAGATG-AAAGGCTACTTTTTAAAGTTGGTTCTTGCACAA  237
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTGTGTGCTCAGATGAAAAGGCTACTTTTTAAAGTTGGTTCTTGCACAA  246

seq1  ATGCTCAGAATAGACAGAGGCAGCC-TTCAGACCATGTGAGTCCAGGACC  286
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  ATGCTCAGAATAGACAGAGGCAGCCTTTCAGACCATGTGAGTCCAGAACC  296

seq1  TGGGCCTGCAGGATCTGGAGAGCATCTAAAAACTATAACCACCTGCAAAT  336
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGCAGAATCTGGAGAGCATCTAAAAACTATAACCACCTGCAAAT  346

seq1  TCACTTCTCCAGTCATTCTGAGCACTTAATCGAAACTCCAAATTATTTAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCCAGTCATTCTGAGCACTTAATCGAAACTCCAAATTATTTAA  396

seq1  CCTGGGG-AAAAAAAACCTCTTCCCATATTCTGTCACATCAAAGACCCGG  435
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGAAAAAAAAACCTCTTCCCATATTCTGTCACATCAAAGACCCGG  446

seq1  ATTTATCTCTAGCCAGATAATAACTTCTTAGTCAGTATAATGAGCTGTGA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTCTAGCCAGATAATAACTTCTTAGTCAGTATAATGAGCTGTGA  496

seq1  GAAGAGTATTCAAAGCATTCTAAAGCCCTGTGGGTATTGAAGACAAGCCA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTATTCAAAGCATTCTAAAGCCCTGTGGGTATTGAAGACAAGCCA  546

seq1  CGCTTGCAAACCTCTATGATGGTGTCTAAGACATCAGAGGGCCATAGTAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGCAAACCTCTATGATGGTGTCTAAGACATCAGAGGGCCATAGTAT  596

seq1  TATTCTTAATGTGGCTTTAAGACGATTCCTACTAATGTTCTTAGTGCTTC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAATGTGGCTTTAAGACGATTCCTACTAATGTTCTTAGTGCTTC  646

seq1  CATATAATCCGGTAAATAACCAGATAACCATGTATTCAGAACACCAACAC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATCCGGTAAATAACCAGATAACCATGTATTCAGAACACCAACAC  696

seq1  GGACTTCCCAAAGGAAAACTCAGGAGTTTGCTCCCTCCACTGCTATGTCA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCCCAAAGGAAAACTCAGGAGTTTGCTCCCTCCACTGCTATGTCA  746

seq1  TTCTCCTACTTTCCATGAAGAAACACGGTTATGTTCAGATTTAGCCTCAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTACTTTCCATGAAGAAACACGGTTATGTTCAGATTTAGCCTCAA  796

seq1  GTGGATGAAAGCAACTCGTATAAGAATAAATATTACACACTGTGAATTCA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGAAAGCAACTCGTATAAGAATAAATATTACACACTGTGAATTCA  846

seq1  CCTACCGACAGCCAGGAGCAGCTGCTCCAAGTTCCCCGAGGTCTCTCGAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCGACAGCCAGGAGCAGCTGCTCCAAGTTCCCCGAGGTCTCTCGAT  896

seq1  CAATGGTTTCCTCAATCTGAAATCCTGATATGGTCATGTACTTGTCAAAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTTTCCTCAATCTGAAATCCTGATATGGTCATGTACTTGTCAAAC  946

seq1  ACTAGAAAACACAGAACAGAATGTGTGTCCTTACTTGCTGAAGAGATTCT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAACACAGAACAGAATGTGTGTCCTTACTTGCTGAAGAGATTCT  996

seq1  CCCTCTAAAAAGAGCTGTAACTTTCACCAGCTGTTATCTATCCAAGCAGA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAAAAAGAGCTGTAACTTTCACCAGCTGTTATCTATCCAAGCAGA  1046

seq1  GCCTCCCCACCCCATCCTCCTTGCTGTCAGATCCCTGTGTTCAGAGCCTC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCACCCCATCCTCCTTGCTGTCAGATCCCTGTGTTCAGAGCCTC  1096

seq1  AATGAGGTAAGCCCTAAGCAATGATTTACATATGCTATAACAATGTTATT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTAAGCCCTAAGCAATGATTTACATATGCTATAACAATGTTATT  1146

seq1  AATTAGGAATTC  1147
      ||||||||||||
seq2  AATTAGGAATTC  1158

seq1: chr3_36206850_36207118
seq2: B6Ng01-156B23.g_71_339

seq1  CAATGGCACACAATCACAGGAACTACCTGCCAGTGGGAAAATCACACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCACACAATCACAGGAACTACCTGCCAGTGGGAAAATCACACCCC  50

seq1  TGCTAGAGCATGAGGCAAATCAGAGTCAGCTGCTGTGGACAATCTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAGCATGAGGCAAATCAGAGTCAGCTGCTGTGGACAATCTGAAAC  100

seq1  AGCCCCATGTCCCATACCTGGGATTAAAACAAAACCACATTCCCATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATGTCCCATACCTGGGATTAAAACAAAACCACATTCCCATAATA  150

seq1  TTCCTGTGGTTGTTTTGTTGTTGTTGTTTTGGGGTTTGGGTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGGTTGTTTTGTTGTTGTTGTTTTGGGGTTTGGGTTTTTTTTTT  200

seq1  TTAATTTTTAACCAAAATTCTCACTACAGATGTGTAATTAATACACATAT  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATAACCAAAATTCTCACTACAGATGTGTAATTAATACACATAT  250

seq1  AATAAATGGAATTTAATAA  269
      ||||||||||||| |||||
seq2  AATAAATGGAATTCAATAA  269