BAC Information

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BAC

Clone NameB6Ng01-156C11
Chromosome3 (Build37)
Map Location 137,051,577 - 137,156,834
singlet/doubletdoublet
Overlap geneEmcn
Upstream genePpp3ca, LOC668870, LOC100039447
Downstream geneEG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156C11.bB6Ng01-156C11.g
ACCDH950733DH950734
length1,1821,123
definitionDH950733|Mus musculus domesticus DNA, BAC clone: B6Ng01-156C11, 5' end.DH950734|Mus musculus domesticus DNA, BAC clone: B6Ng01-156C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,155,637 - 137,156,834)(137,051,577 - 137,052,707)
sequence
tattcataggcaataagaaaacagtgaaggcatcctacttatataattat
ataataattgtataattatataattattaataataaaatgtctagggaaa
gttgttaagtcaattattctagttgtagaacttaatagaatgcagccatt
ctattataagaatgttaacattctattgtaagaatgtaaaagtggtatcc
agttgtgaagtgatacagtctagtgtggaatcagtgctttcagtgaacat
tggtaagagaccacactatagtcagcagttagagtgaagaggtgaatttt
ttccctttgctttcctaactttgcatgtcctctctatgttagcaccatgc
actatgaagtacatgatatttctggacaaacaaatgaagcataaactttt
cagccaccctgctagtattcacaaatgatgtacctcgtatgacttagata
aattgggtaacttcatagcctctcttcttagcttctgtttatgtaatggg
agtaattttagcaactactttctaagttgtactttaatgagttaatgtat
atacaaaacacagcagagactatgagacacaataagcaatgtccgtttgc
tacctagtgttgtttaaaataatggtatcaattttctgttagtgtaccaa
gttagaagggaaaaataaaaaccgactttagcttgctgcctcggaggtct
cagtcttgactaaatagtcctgttgctttgagtttgtggctggacatcac
aacatggtggaagcacatggagagagacctgctctctcatggcaaagatc
aggaagaggctagggtcccatagttcccttcagggcacacccttatgacc
taagatttcccaacaggcccacctctttttctttttctttttttcttttt
tcctgtaaggatcataacgtaacccagtatgacctcagctcaagatctga
ttatttttgaaaatatgcatttatttctcctttctagaaactgttgatta
tgatgtagcagctgacactgattgatgatttgcaaatgttactcagttta
tcatagcacaagctgacttgcctagaaagtaggtttttcacacattactg
cttttaagatgctgatatttttgttaaggttttaggaaggtctaaattat
gactgaatttcatctaaattctttttttaagc
gaattccctttggttttgctcattttggacattgttacttccttttgatt
tcttaatctcatggattacagtaatgttggttggcagtttaatctttcaa
gccttagaatatgtctttctatttcttccttgcctgtgggatttttgttg
gaccatctgcttttagtgtaatgagaagaatactacacttttttttcctt
cagattttagaacattttattgtcttaaactctaatatgtaatggtgaaa
gactttctggtcatttctcttggtatctaactagcctcctgtgcatagac
ttccatattaaccacaagatttaaaatgaattctactaatatttttctgc
aaatgaagtttctatgccttttaactttccccctctaactttgggtggtt
attaaaaatagtgtttttctatttactgtcgtcttgaaaatccctgacgc
tgccttaaccctttcttcctgtttgctttatctttcttcattcttcccat
ttcctttctttcttttcctcgtgacaggaacatttcaaaaggaaacattt
caacgttccaaaaacgttgcatcaacttcacagattctccctttcccacg
atctaacctgttattggggctgtaataatttgattttctgaactctttat
ttataagacatcttcacgtctggcaagtttcccactcctatttgtctaca
ctcacttaaaggtttgactgaattctcctggatttctctatcttttaatg
tttattcttttaaattctaggacttttaaaataatttttattgctaaata
attcccatagcatacaatttgtccatttcaattcagcagttatgagtcca
agcattcatttttacatatattttgcaattccgtacacatagacaatgtg
tgatcatattcattgccccatgaactttatatttctcaccctcatttgcc
ctgtttgctacccactagtccctgcctactttcatcatgtctttttagtc
ttttaagttcttcatggcattgtttcattaaatttcttgagaaatgctgg
tggaaatatttgtcccttttagagagcacttactggcatgtttttttgaa
aagtctgtgcactcacatgagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_137155637_137156834
seq2: B6Ng01-156C11.b_53_1234 (reverse)

seq1  GCTTAAAAAAAGAAATTTTTAGATGAATATCAGTCATAAATTTAGACATT  50
      ||||||||||||||   ||||||||||  |||||||| ||||||||| ||
seq2  GCTTAAAAAAAGAA---TTTAGATGAAATTCAGTCAT-AATTTAGACCTT  46

seq1  CTTTAAAACCTTAAACAAAATATCAGCATCTTAAAAGCAGTAATGTGTGA  100
      |  |||||||||||  ||||||||||||||||||||||||||||||||||
seq2  C-CTAAAACCTTAACAAAAATATCAGCATCTTAAAAGCAGTAATGTGTGA  95

seq1  AAAGACCTACTTTCTAGGCAAGTCAGGCTTGTGCCTATGATAAACTTGAG  150
      ||| ||||||||||||||||||||| ||||||| ||||||||||| ||||
seq2  AAA-ACCTACTTTCTAGGCAAGTCA-GCTTGTG-CTATGATAAAC-TGAG  141

seq1  TTAACATTTGCAAATCAATCAATCAGTGTCAGCTTGCTACATCATAATCA  200
       ||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  -TAACATTTGCAAATC-ATCAATCAGTGTCAGC-TGCTACATCATAATCA  188

seq1  ACAGTTTCTAAGAAAGGAGAAATAAATGCATATTTTCAAAAATAATCAGA  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCT-AGAAAGGAGAAATAAATGCATATTTTCAAAAATAATCAGA  237

seq1  TCTTGAGCCTGAGGTCATACTGGGTTACGTTATGATCCTTACAGGAAAAA  300
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTTGAG-CTGAGGTCATACTGGGTTACGTTATGATCCTTACAGG-AAAA  285

seq1  AAGAAAAAAAGAAAAAGAAAAAGAGGTGGGCCTGTTGGGAAATCTTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAGAAAAAGAAAAAGAGGTGGGCCTGTTGGGAAATCTTAGGT  335

seq1  CATAAGGGTGTGCCCTTGAAGGGAACTATGGGACCCTAGCCTCTTCCTGA  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATAAGGGTGTGCCC-TGAAGGGAACTATGGGACCCTAGCCTCTTCCTGA  384

seq1  TCTTTGCCATGAGAGAGCAGGTCTCTCTCCATGTGCTTCCACCATGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCATGAGAGAGCAGGTCTCTCTCCATGTGCTTCCACCATGTTGT  434

seq1  GATGTCCAGCCACAAACTCAAAGCAACAGGACTATTTAGTCAAGACTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCAGCCACAAACTCAAAGCAACAGGACTATTTAGTCAAGACTGAG  484

seq1  ACCTCCGAGGCAGCAAGCTAAAGTCGGTTTTTATTTTTCCCTTCTAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCGAGGCAGCAAGCTAAAGTCGGTTTTTATTTTTCCCTTCTAACTT  534

seq1  GGTACACTAACAGAAAATTGATACCATTATTTTAAACAACACTAGGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACTAACAGAAAATTGATACCATTATTTTAAACAACACTAGGTAGC  584

seq1  AAACGGACATTGCTTATTGTGTCTCATAGTCTCTGCTGTGTTTTGTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGACATTGCTTATTGTGTCTCATAGTCTCTGCTGTGTTTTGTATAT  634

seq1  ACATTAACTCATTAAAGTACAACTTAGAAAGTAGTTGCTAAAATTACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAACTCATTAAAGTACAACTTAGAAAGTAGTTGCTAAAATTACTCC  684

seq1  CATTACATAAACAGAAGCTAAGAAGAGAGGCTATGAAGTTACCCAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATAAACAGAAGCTAAGAAGAGAGGCTATGAAGTTACCCAATTTA  734

seq1  TCTAAGTCATACGAGGTACATCATTTGTGAATACTAGCAGGGTGGCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCATACGAGGTACATCATTTGTGAATACTAGCAGGGTGGCTGAA  784

seq1  AAGTTTATGCTTCATTTGTTTGTCCAGAAATATCATGTACTTCATAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATGCTTCATTTGTTTGTCCAGAAATATCATGTACTTCATAGTGC  834

seq1  ATGGTGCTAACATAGAGAGGACATGCAAAGTTAGGAAAGCAAAGGGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTAACATAGAGAGGACATGCAAAGTTAGGAAAGCAAAGGGAAAA  884

seq1  AATTCACCTCTTCACTCTAACTGCTGACTATAGTGTGGTCTCTTACCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACCTCTTCACTCTAACTGCTGACTATAGTGTGGTCTCTTACCAAT  934

seq1  GTTCACTGAAAGCACTGATTCCACACTAGACTGTATCACTTCACAACTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGAAAGCACTGATTCCACACTAGACTGTATCACTTCACAACTGG  984

seq1  ATACCACTTTTACATTCTTACAATAGAATGTTAACATTCTTATAATAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACTTTTACATTCTTACAATAGAATGTTAACATTCTTATAATAGAA  1034

seq1  TGGCTGCATTCTATTAAGTTCTACAACTAGAATAATTGACTTAACAACTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCATTCTATTAAGTTCTACAACTAGAATAATTGACTTAACAACTT  1084

seq1  TCCCTAGACATTTTATTATTAATAATTATATAATTATACAATTATTATAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGACATTTTATTATTAATAATTATATAATTATACAATTATTATAT  1134

seq1  AATTATATAAGTAGGATGCCTTCACTGTTTTCTTATTGCCTATGAATA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAAGTAGGATGCCTTCACTGTTTTCTTATTGCCTATGAATA  1182

seq1: chr3_137051577_137052707
seq2: B6Ng01-156C11.g_68_1190

seq1  GAATTCCCTTTGGTTTTGCTCATTTTGGACATTGTTACTTCCTTTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTGGTTTTGCTCATTTTGGACATTGTTACTTCCTTTTGATT  50

seq1  TCTTAATCTCATGGATTACAGTAATGTTGGTTGGCAGTTTAATCTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCTCATGGATTACAGTAATGTTGGTTGGCAGTTTAATCTTTCAA  100

seq1  GCCTTAGAATATGTCTTTCTATTTCTTCCTTGCCTGTGGGATTTTTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGAATATGTCTTTCTATTTCTTCCTTGCCTGTGGGATTTTTGTTG  150

seq1  GACCATCTGCTTTTAGTGTAATGAGAAGAATACTACACTTTTTTTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCTGCTTTTAGTGTAATGAGAAGAATACTACACTTTTTTTTCCTT  200

seq1  CAGATTTTAGAACATTTTATTGTCTTAAACTCTAATATGTAATGGTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTAGAACATTTTATTGTCTTAAACTCTAATATGTAATGGTGAAA  250

seq1  GACTTTCTGGTCATTTCTCTTGGTATCTAACTAGCCTCCTGTGCATAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGGTCATTTCTCTTGGTATCTAACTAGCCTCCTGTGCATAGAC  300

seq1  TTCCATATTAACCACAAGATTTAAAATGAATTCTACTAATATTTTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATTAACCACAAGATTTAAAATGAATTCTACTAATATTTTTCTGC  350

seq1  AAATGAAGTTTCTATGCCTTTTAACTTTCCCCCTCTAACTTTGGGTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGTTTCTATGCCTTTTAACTTTCCCCCTCTAACTTTGGGTGGTT  400

seq1  ATTAAAAATAGTGTTTTTCTATTTACTGTCGTCTTGAAAATCCCTGACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATAGTGTTTTTCTATTTACTGTCGTCTTGAAAATCCCTGACGC  450

seq1  TGCCTTAACCCTTTCTTCCTGTTTGCTTTATCTTTCTTCATTCTTCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAACCCTTTCTTCCTGTTTGCTTTATCTTTCTTCATTCTTCCCAT  500

seq1  TTCCTTTCTTTCTTTTCCTCGTGACAGGAACATTTCAAAAGGAAACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTTCTTTTCCTCGTGACAGGAACATTTCAAAAGGAAACATTT  550

seq1  CAACGTTCCAAAAACGTTGCATCAACTTCACAGATTCTCCCTTTCCCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTCCAAAAACGTTGCATCAACTTCACAGATTCTCCCTTTCCCACG  600

seq1  ATCTAACCTGTTATTGGGGCTGTAATAATTTGATTTTCTGAACTCTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACCTGTTATTGGGGCTGTAATAATTTGATTTTCTGAACTCTTTAT  650

seq1  TTATAAGACATCTTCACGTCTGGCAAGTTTCCCACTCCTATTTGTCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGACATCTTCACGTCTGGCAAGTTTCCCACTCCTATTTGTCTACA  700

seq1  CTCACTTAAAGGTTTGACTGAATTCTCCTGGATTTCTCTATCTTTTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTAAAGGTTTGACTGAATTCTCCTGGATTTCTCTATCTTTTAATG  750

seq1  TTTATTCTTTTAAATTCTAGGACTTTTAAAATAATTTTTATTGCTAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTTAAATTCTAGGACTTTTAAAATAATTTTTATTGCTAAATA  800

seq1  ATTCCCATAGCATACAATTTGTCCATTTCAATTCAGCAGTTATGAGTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATAGCATACAATTTGTCCATTTCAATTCAGCAGTTATGAGTCCA  850

seq1  AGCATTCATTTTTACATATATTTTGCAATTCCGTACACATAGACAATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCATTTTTACATATATTTTGCAATTCCGTACACATAGACAATGTG  900

seq1  TGATCATATTCATTGCCCCATGAACTTTATTATTTCTCACCCTCATTTGC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGATCATATTCATTGCCCCATGAACTTTA-TATTTCTCACCCTCATTTGC  949

seq1  CCTGTTTTGCTACCCCAACTAGTCCCTGCCTACTTTCATCATGTCCTTTT  1000
      |||| ||||||||||  ||||||||||||||||||||||||||| |||||
seq2  CCTG-TTTGCTACCC--ACTAGTCCCTGCCTACTTTCATCATGT-CTTTT  995

seq1  TAGTCTTTTAAGTTCTTCATTGGCATTGTATTCATTAAATTTCCTTGAGA  1050
      ||||||||||||||||||| ||||||||| |||||||||||| |||||||
seq2  TAGTCTTTTAAGTTCTTCA-TGGCATTGT-TTCATTAAATTT-CTTGAGA  1042

seq1  TATGCTGGTGGATATATTTGTCCCTTTTA-AGAGCACCTTACTGCCATG-  1098
       ||||||||||| |||||||||||||||| |||||| ||||||| |||| 
seq2  AATGCTGGTGGAAATATTTGTCCCTTTTAGAGAGCA-CTTACTGGCATGT  1091

seq1  TTTTATGATAGTCCTGTGCACCTACAATGAGAT  1131
      |||| ||| |   ||||||||  || |||||||
seq2  TTTTTTGAAAAGTCTGTGCACTCAC-ATGAGAT  1123