BAC Information

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BAC

Clone NameB6Ng01-156D14
Chromosome3 (Build37)
Map Location 68,021,272 - 68,181,334
singlet/doubletdoublet
Overlap geneEG545531, LOC631379
Upstream geneRsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
Downstream geneSchip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156D14.bB6Ng01-156D14.g
ACCDH950786DH950787
length1,2001,116
definitionDH950786|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D14, 5' end.DH950787|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,180,136 - 68,181,334)(68,021,272 - 68,022,388)
sequence
gaattctcttctggtcctaggcagccatgcaaagcatgctttaaaactat
agtcccttgataaatttatttcatgcaaatttgactctggataaatatat
aaatgttttcacccgtaaactcacacttcaggtcctgctggattggcaca
tctcatgtgccaattgcttcctcatttaaattaagggaggaaaacagctg
taaattttatgacctagataaaaatcatatttctttgcagtctcttactc
ttagagcttgataacttaggtcctgagaattgatttaaaaaaaaacaatc
taatttcctgcttgctatttatggatttctctccttctctgttcttcaat
tagcttcagcggggaaagcagaatagccagtgtgatgtttatagatttga
gtatctcgtgttaattcaaatctaaaatactgcagaatgagaacaccagt
tgctggttagtcttcgttgttaacttgattggattgtaatcaccatggaa
acacatctctaggtgtgtctgtgagggcatttcctgagatagttaactaa
gaacagaacacccaccctcgttgctccatccctgggggctggggttccag
gtgagcaccagaatcacgcttgcttcctggctgcaaagacaagatgtccc
tttgctctagccatcgcaggaaaggcatggactacaccccctactataac
ccggaacagatcttgcttccttaagttgattttgttaagtattttgtcac
aacatgaaaaataactatcagagccaccaatgaaatcttttatcttcttc
aaaagacaacattttggtatgaatccttttttttttttttttcctgtgac
tcttctcatctgcctctgaaactaacgaaacaaaaaaagtctcatgtttc
tcccgaaacatcaatatgtcaatgataaccccattttttctggaatggaa
gacagttgaattgcttgcttccttttatcaaagactcttggttcccacaa
gggacaataatttgtgattccaaaaagctcttccaccctaaagctgggga
acttcagaactaagtgaaatgctgagtaaaaggcagtaacaccactggag
gttgtcaaggggagtgaggaagtgggaactcgcaaggaaagagtgttgct
atcatatgtgttattcacatgggcgaagcacggggttcacacaaagagga

gaattcctatcctggttctccaaatgttttcttaattgtctgttgactga
taaagaatatagaaactgatgttacctaaaccagggtgcataagttataa
aaatatataactaatagtctgttattccccagttaactacatgcaactga
cccacccctttgtcctcttatcactttgagctccaaatctaatgtctagt
agaattaattaagaaccttgaagccaagtgccctggctgtggcctagtct
ccaacaggtactcccttgcttaacccataatgtcaaaatacaatgggata
acactgcagcaacaccccaccccccctccaattcaccacttgattgtgtt
cccatactttaaaaatgttggacagtctgccctcaggggtatggttcaga
ttctgaactggccacctctctgagggctcagaaaataaagcattcattat
taagcttctatatctgaagtgagttttctctgcttccacgataaatccaa
ctgtaggaattttgagaactaggaaaattttggtccacaattattcaaag
tttgtccctgtatatttctggtaataaaattattgaaaaggaatataaaa
gagcagttataagttagcccaggaaactctgaaataaatagcaggcaagt
tttctaatgaacagctttgagctggcatgtgccaaaattcacaggctagg
ttcattttcataaggtacatgttaactaaagcagggttgtttttgttact
agataggctgcataggcagccccatttcctcgcttagccaaaagaattaa
gcaacttcatatcttaaacaaataaagactttatcgatataaaaacaaaa
gaagacaaggctggagatgtagctcacttttgacagtgcttgcctagctt
gcatgaagccccaggttcattctcagcaccatatgaaagaagacttggtg
agtcacttctgcagttaactccctccctgggggaggtagagtcaaggaaa
taaaagttcaaggtcatcctcactgataatcccctccccaaatgaataag
tggacttaagttgaggcaggtgttaccatgttcaaaatcaatggctggtc
cagtacgagggtcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_68180136_68181334
seq2: B6Ng01-156D14.b_43_1242 (reverse)

seq1  TCCTCTGTGTG---ACACCGTGCTTCTGGGCCA-GTGGATAACCACATAA  46
      |||||| ||||   || |||||||||  | ||| ||| |||| |||||  
seq2  TCCTCTTTGTGTGAACCCCGTGCTTC--GCCCATGTGAATAA-CACAT--  45

seq1  ATGAATGACAAACCACTC-TTCCTTGCGAG-TCCCACTTCCTCACTCCCC  94
      ||| ||  |||  ||||| ||||||||||| |||||||||||||||||||
seq2  ATG-ATAGCAA--CACTCTTTCCTTGCGAGTTCCCACTTCCTCACTCCCC  92

seq1  TTGACAAACCTCAGT-GTGTTAACTGCCTCTTAACTCAGCATTTCAACTT  143
      ||||||| |  |||| ||||| ||||||| || |||||||||||| ||||
seq2  TTGACAACCTCCAGTGGTGTT-ACTGCCT-TTTACTCAGCATTTC-ACTT  139

seq1  AG-TCTGAAAGTTCCCAAGCTTTAGGGTGGGAAGAGCTTTTTGGAATCAC  192
      || |||| |||||||| ||||||||||| |||||||||||||||||||||
seq2  AGTTCTG-AAGTTCCCCAGCTTTAGGGT-GGAAGAGCTTTTTGGAATCAC  187

seq1  AAA-TATTGTCCCTTGTGGGAACCAAGAGTCTTTGATAAAAGGAAGC-AG  240
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATTATTGTCCCTTGTGGGAACCAAGAGTCTTTGATAAAAGGAAGCAAG  237

seq1  CAATTCAACTGTCTTCCA-TCCAG-AAAAATGGGGTTATCATTGACATAA  288
      |||||||||||||||||| ||||| ||||||||||||||||||||||| |
seq2  CAATTCAACTGTCTTCCATTCCAGAAAAAATGGGGTTATCATTGACAT-A  286

seq1  TGGATGTTTCGGGAGAAACATGAGACTGTTTT--GTTCGTTAGTTTCAGA  336
      | ||||||||||||||||||||||||| ||||   |||||||||||||||
seq2  TTGATGTTTCGGGAGAAACATGAGACTTTTTTTGTTTCGTTAGTTTCAGA  336

seq1  GGCAGATGAGAAGAGTCACAGG-AAAAAAAAAAAAAAAGGATTCATACCA  385
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCAGATGAGAAGAGTCACAGGAAAAAAAAAAAAAAAAGGATTCATACCA  386

seq1  AAATGTTGTCTTTTGAAGAAGATAAAAGATTTCATTGGTGGCTCTGATAG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTCTTTTGAAGAAGATAAAAGATTTCATTGGTGGCTCTGATAG  436

seq1  TTATTTTTCATGTTGTGACAAAATACTTAACAAAATCAACTTAAGGAAGC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCATGTTGTGACAAAATACTTAACAAAATCAACTTAAGGAAGC  486

seq1  AAGATCTGTTCCGGGTTATAGTAGGGGGTGTAGTCCATGCCTTTCCTGCG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGTTCCGGGTTATAGTAGGGGGTGTAGTCCATGCCTTTCCTGCG  536

seq1  ATGGCTAGAGCAAAGGGACATCTTGTCTTTGCAGCCAGGAAGCAAGCGTG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGAGCAAAGGGACATCTTGTCTTTGCAGCCAGGAAGCAAGCGTG  586

seq1  ATTCTGGTGCTCACCTGGAACCCCAGCCCCCAGGGATGGAGCAACGAGGG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTGCTCACCTGGAACCCCAGCCCCCAGGGATGGAGCAACGAGGG  636

seq1  TGGGTGTTCTGTTCTTAGTTAACTATCTCAGGAAATGCCCTCACAGACAC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTCTGTTCTTAGTTAACTATCTCAGGAAATGCCCTCACAGACAC  686

seq1  ACCTAGAGATGTGTTTCCATGGTGATTACAATCCAATCAAGTTAACAACG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAGATGTGTTTCCATGGTGATTACAATCCAATCAAGTTAACAACG  736

seq1  AAGACTAACCAGCAACTGGTGTTCTCATTCTGCAGTATTTTAGATTTGAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAACCAGCAACTGGTGTTCTCATTCTGCAGTATTTTAGATTTGAA  786

seq1  TTAACACGAGATACTCAAATCTATAAACATCACACTGGCTATTCTGCTTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACGAGATACTCAAATCTATAAACATCACACTGGCTATTCTGCTTT  836

seq1  CCCCGCTGAAGCTAATTGAAGAACAGAGAAGGAGAGAAATCCATAAATAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCTGAAGCTAATTGAAGAACAGAGAAGGAGAGAAATCCATAAATAG  886

seq1  CAAGCAGGAAATTAGATTGTTTTTTTTTAAATCAATTCTCAGGACCTAAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGAAATTAGATTGTTTTTTTTTAAATCAATTCTCAGGACCTAAG  936

seq1  TTATCAAGCTCTAAGAGTAAGAGACTGCAAAGAAATATGATTTTTATCTA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGCTCTAAGAGTAAGAGACTGCAAAGAAATATGATTTTTATCTA  986

seq1  GGTCATAAAATTTACAGCTGTTTTCCTCCCTTAATTTAAATGAGGAAGCA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAAAATTTACAGCTGTTTTCCTCCCTTAATTTAAATGAGGAAGCA  1036

seq1  ATTGGCACATGAGATGTGCCAATCCAGCAGGACCTGAAGTGTGAGTTTAC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACATGAGATGTGCCAATCCAGCAGGACCTGAAGTGTGAGTTTAC  1086

seq1  GGGTGAAAACATTTATATATTTATCCAGAGTCAAATTTGCATGAAATAAA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAAACATTTATATATTTATCCAGAGTCAAATTTGCATGAAATAAA  1136

seq1  TTTATCAAGGGACTATAGTTTTAAAGCATGCTTTGCATGGCTGCCTAGGA  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAGGGACTATAGTTTTAAAGCATGCTTTGCATGGCTGCCTAGGA  1186

seq1  CCAGAAGAGAATTC  1199
      ||||||||||||||
seq2  CCAGAAGAGAATTC  1200

seq1: chr3_68021272_68022388
seq2: B6Ng01-156D14.g_66_1181

seq1  GAATTCCTATCCTGGTTCTCCAAATGTTTTCTTAATTGTCTGTTGACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCCTGGTTCTCCAAATGTTTTCTTAATTGTCTGTTGACTGA  50

seq1  TAAAGAATATAGAAACTGATGTTACCTAAACCAGGGTGCATAAGTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATATAGAAACTGATGTTACCTAAACCAGGGTGCATAAGTTATAA  100

seq1  AAATATATAACTAATAGTCTGTTATTCCCCAGTTAACTACATGCAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAACTAATAGTCTGTTATTCCCCAGTTAACTACATGCAACTGA  150

seq1  CCCACCCCTTTGTCCTCTTATCACTTTGAGCTCCAAATCTAATGTCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCTTTGTCCTCTTATCACTTTGAGCTCCAAATCTAATGTCTAGT  200

seq1  AGAATTAATTAAGAACCTTGAAGCCAAGTGCCCTGGCTGTGGCCTAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATTAAGAACCTTGAAGCCAAGTGCCCTGGCTGTGGCCTAGTCT  250

seq1  CCAACAGGTACTCCCTTGCTTAACCCATAATGTCAAAATACAATGGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGGTACTCCCTTGCTTAACCCATAATGTCAAAATACAATGGGATA  300

seq1  ACACTGCAGCAACACCCCACCCCCCCTCCAATTCACCACTTGATTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAGCAACACCCCACCCCCCCTCCAATTCACCACTTGATTGTGTT  350

seq1  CCCATACTTTAAAAATGTTGGACAGTCTGCCCTCAGGGGTATGGTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACTTTAAAAATGTTGGACAGTCTGCCCTCAGGGGTATGGTTCAGA  400

seq1  TTCTGAACTGGCCACCTCTCTGAGGGCTCAGAAAATAAAGCATTCATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTGGCCACCTCTCTGAGGGCTCAGAAAATAAAGCATTCATTAT  450

seq1  TAAGCTTCTATATCTGAAGTGAGTTTTCTCTGCTTCCACGATAAATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCTATATCTGAAGTGAGTTTTCTCTGCTTCCACGATAAATCCAA  500

seq1  CTGTAGGAATTTTGAGAACTAGGAAAATTTTGGTCCACAATTATTCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAATTTTGAGAACTAGGAAAATTTTGGTCCACAATTATTCAAAG  550

seq1  TTTGTCCCTGTATATTTCTGGTAATAAAATTATTGAAAAGGAATATAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCTGTATATTTCTGGTAATAAAATTATTGAAAAGGAATATAAAA  600

seq1  GAGCAGTTATAAGTTAGCCCAGGAAACTCTGAAATAAATAGCAGGCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTATAAGTTAGCCCAGGAAACTCTGAAATAAATAGCAGGCAAGT  650

seq1  TTTCTAATGAACAGCTTTGAGCTGGCATGTGCCAAAATTCACAGGCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGAACAGCTTTGAGCTGGCATGTGCCAAAATTCACAGGCTAGG  700

seq1  TTCATTTTCATAAGGTACATGTTAACTAAAGCAGGGTTGTTTTTGTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCATAAGGTACATGTTAACTAAAGCAGGGTTGTTTTTGTTACT  750

seq1  AGATAGGCTGCATAGGCAGCCCCATTTCCTCGCTTAGCCAAAAGAATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGCTGCATAGGCAGCCCCATTTCCTCGCTTAGCCAAAAGAATTAA  800

seq1  GCAACTTCAATATCTTAAACAAATAAAGACTTTATCGATATAAAAACAAA  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTC-ATATCTTAAACAAATAAAGACTTTATCGATATAAAAACAAA  849

seq1  AGAAGACAAGGCTGGAGATGTAGCTCACTTTGTACAGTGCTTGCCTAGCT  900
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AGAAGACAAGGCTGGAGATGTAGCTCACTTTTGACAGTGCTTGCCTAGCT  899

seq1  TGCATGAAGCCCCAGGTTCAATCCTCAGCACCATATG-AAGAAGACATGG  949
      ||||||||||||||||||| || |||||||||||||| |||||||| |||
seq2  TGCATGAAGCCCCAGGTTC-ATTCTCAGCACCATATGAAAGAAGACTTGG  948

seq1  TGAGTCACATCTGCAGTTAAC-CCCTCCCT-GGGGAGGTAGAGTCAAGGA  997
      |||||||| |||||||||||| |||||||| |||||||||||||||||||
seq2  TGAGTCACTTCTGCAGTTAACTCCCTCCCTGGGGGAGGTAGAGTCAAGGA  998

seq1  AATAAAAAGTTCAAGGTCATCCTCAACTGATAATCCCCTCCCCAAATGAA  1047
      ||| |||||||||||||||||||| ||||||||||||||||||||||| |
seq2  AAT-AAAAGTTCAAGGTCATCCTC-ACTGATAATCCCCTCCCCAAATG-A  1045

seq1  ATAAGT-GACTTTAAAGTAGAGGCAGTTGTTA-CATGTCAAATATCAATT  1095
      |||||| |||||  |||| ||||||| ||||| |||||  || |||||| 
seq2  ATAAGTGGACTT--AAGTTGAGGCAGGTGTTACCATGTTCAAAATCAATG  1093

seq1  GCTGGT-CAGTAACGA-GGTCTTG  1117
      |||||| |||| |||| |||||||
seq2  GCTGGTCCAGT-ACGAGGGTCTTG  1116