BAC Information

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BAC

Clone NameB6Ng01-156H10
Chromosome3 (Build37)19 (Build37)
Map Location 41,059,110 - 41,059,73759,635,682 - 59,636,729
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156H10.bB6Ng01-156H10.g
ACCDH950962DH950963
length9871,042
definitionDH950962|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H10, 5' end.DH950963|Mus musculus domesticus DNA, BAC clone: B6Ng01-156H10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,110 - 41,059,737)(59,635,682 - 59,636,729)
sequence
gaattctttgttcagctctgagccccattttttaatgggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatccgatttgggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacgatgtcttttgcctcgcagaagctttgcaattttat
gaggtcccatttatcgattctcgatcttacagcacaagccattgctgttc
tattcaggaatttttccccctgtacccatatcttcgaggcttttccctac
tttctcctctaataagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaaggagatagaaatggatcaatttg
cattcttctacatgtgccagcaccatttgttgaaaatgctgtcttttttc
cactggatggttttagctcccttgtcaaagatcaagtgaccataggtgtg
tgggctcatctctgggtcttcaattctgttccattggtctacttgtctgt
cactataccagtaccatgcagtttttatcacaattgctctgtagtacagc
tttaggtcaggcatggttagagcaatatatctttacacaatctttaaagc
aattaattcaagccttcactaatatttgcctataggaagcaggtagtttt
ttaacttgtttaagctgtctgcctagagtagccatcctcttataccattc
atctgttgagctctctatctgaagccacggacatttattagtttatactt
tttcatcgcagggaattatcactgccctctctacttggagtcagtgacta
atttttcctagcctagttgtgaacagtgggcaaattcccatgtgatttag
acaaaatctgtatataaatctattctaaaagcaaataatcccaatttata
acttacagctaagcagctcccattctctggctctctg
gaattcatgaaagtcaattctttagaactcccagcaggacttgcagcaac
ccagctggaggaagccattgttattgcttagttatattacatagcctagg
gagggatcttgtgaaccttctttctgagcatgttactcctggttttttcc
cccaatggggaatgttctaacaaattggaagaaatgattatagaaataga
ggtgttattttccgtttataattaataaatatatcttgaagagatgtctt
gagggtgtaacccatttctcatcacacatcagtgagttgttagctctctg
tgattgtgacaagatacttgagcatgccatctcctaagaaggaaaggttt
atgccatccgcccatggtttcagtacattgtcacctagcccatctggtcc
tgtgatgcattgtggtggtgtggtattatctcacacttcaaaaggaaaca
aaggcaaagaaggggctgatcttggtagctccttcaagggcacacaccac
tttccaaagctctcaccaattccaaacagtactgcaggttgttggccttc
agtatgtatcttggggtgggcttgggagacataacagttagctagttaat
tttagcattcagtagtagatcctgtctgcagcccttattattactgtggt
gacttcaaggagactccttttttggcatcccttctagatttattggaagt
aatttttctgtactgaagaggagtcccttctcattaattaacattagtag
gccttataatttgttctgctttgatggtgataattcaatgctttccttac
ttattttgtagctcaagatgccccagctgtgaatctttccagctttctct
tgtggactgcaagcctttgaacatgcctttatcttcctcttcgttttagt
tcttcctttatgatacctggaaattgtttcaggcttgctatatggttttt
agaccatgctggcatcgaccacttctcaaaggaccgatttcttttattac
agagccagtactagaatggtatcctggctagtttgtctcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059110_41059737
seq2: B6Ng01-156H10.b_50_665 (reverse)

seq1  ACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGC  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAACTGC  50

seq1  ATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAG  100
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  ATGGTACTGGTATAGTGACAGACAAGTAGACCAATGGAACAGAATTGAAG  100

seq1  ACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGA  150
      || |||| | ||  |||||||||||||||||||||||||| |||||||||
seq2  ACCCAGAGATGAGCCCACACACCTATGGTCACTTGATCTTTGACAAGGGA  150

seq1  GCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTG  200

seq1  GCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTAT  250
      |||              ||||||||||||||| |||||||||| | ||||
seq2  GCA--------------CATGTAGAAGAATGCAAATTGATCCATTTCTAT  236

seq1  CTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAA  300
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAA  286

seq1  CCAGAGACACTGAAACTTA-TAGAGGAGAAAGTGGGGAAAAGCCTTGAAG  349
      ||||||||||||||||||| ||||||||||||| ||||||||||| ||||
seq2  CCAGAGACACTGAAACTTATTAGAGGAGAAAGTAGGGAAAAGCCTCGAAG  336

seq1  ATATGGTCACA-GGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGC  398
      ||||||  ||| ||||||||||||||| ||||||||||||||||||||||
seq2  ATATGGGTACAGGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGC  386

seq1  TGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCT  448
      |||||||| |||||| || |||||||||||||| ||| ||||||||||||
seq2  TGTAAGATCGAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTCT  436

seq1  GCAAGGCAAAAGACACCGTCAATAAGACAAAAAG-GCACCAACAGATTGG  497
      || |||||||||||| ||||||||||||||||||  ||||||||||||||
seq2  GCGAGGCAAAAGACATCGTCAATAAGACAAAAAGACCACCAACAGATTGG  486

seq1  GAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATAT  547
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  GAAAGGATCTTTACCTATCCCAAATCGGATAGGGGACTAATATCCAATAT  536

seq1  ATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTA  597
      |||| ||||||||||||||||||| ||||||||||||||||| |||||||
seq2  ATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAA-CCCATTA  585

seq1  AAAAATGGGGCTCAGAGCTAAACAAAGAATT  628
      ||||||||||||||||||| |||||||||||
seq2  AAAAATGGGGCTCAGAGCTGAACAAAGAATT  616

seq1: chr19_59635682_59636729
seq2: B6Ng01-156H10.g_67_1108

seq1  GAATTCATGAAAGTCAATTCTTTAGAACTCCCAGCAGGACTTGCAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAAGTCAATTCTTTAGAACTCCCAGCAGGACTTGCAGCAAC  50

seq1  CCAGCTGGAGGAAGCCATTGTTATTGCTTAGTTATATTACATAGCCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGAGGAAGCCATTGTTATTGCTTAGTTATATTACATAGCCTAGG  100

seq1  GAGGGATCTTGTGAACCTTCTTTCTGAGCATGTTACTCCTGGTTTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATCTTGTGAACCTTCTTTCTGAGCATGTTACTCCTGGTTTTTTCC  150

seq1  CCCAATGGGGAATGTTCTAACAAATTGGAAGAAATGATTATAGAAATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGGGAATGTTCTAACAAATTGGAAGAAATGATTATAGAAATAGA  200

seq1  GGTGTTATTTTCCGTTTATAATTAATAAATATATCTTGAAGAGATGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTATTTTCCGTTTATAATTAATAAATATATCTTGAAGAGATGTCTT  250

seq1  GAGGGTGTAACCCATTTCTCATCACACATCAGTGAGTTGTTAGCTCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTAACCCATTTCTCATCACACATCAGTGAGTTGTTAGCTCTCTG  300

seq1  TGATTGTGACAAGATACTTGAGCATGCCATCTCCTAAGAAGGAAAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTGACAAGATACTTGAGCATGCCATCTCCTAAGAAGGAAAGGTTT  350

seq1  ATGCCATCCGCCCATGGTTTCAGTACATTGTCACCTAGCCCATCTGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATCCGCCCATGGTTTCAGTACATTGTCACCTAGCCCATCTGGTCC  400

seq1  TGTGATGCATTGTGGTGGTGTGGTATTATCTCACACTTCAAAAGGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGCATTGTGGTGGTGTGGTATTATCTCACACTTCAAAAGGAAACA  450

seq1  AAGGCAAAGAAGGGGCTGATCTTGGTAGCTCCTTCAAGGGCACACACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGAAGGGGCTGATCTTGGTAGCTCCTTCAAGGGCACACACCAC  500

seq1  TTTCCAAAGCTCTCACCAATTCCAAACAGTACTGCAGGTTGTTGGCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAGCTCTCACCAATTCCAAACAGTACTGCAGGTTGTTGGCCTTC  550

seq1  AGTATGTATCTTGGGGTGGGCTTGGGAGACATAACAGTTAGCTAGTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTATCTTGGGGTGGGCTTGGGAGACATAACAGTTAGCTAGTTAAT  600

seq1  TTTAGCATTCAGTAGTAGATCCTGTCTGCAGCCCTTATTATTACTGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATTCAGTAGTAGATCCTGTCTGCAGCCCTTATTATTACTGTGGT  650

seq1  GACTTCAAGGAGACTCCTTTTTTGGCATCCCTTCTAGATTTATTGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAAGGAGACTCCTTTTTTGGCATCCCTTCTAGATTTATTGGAAGT  700

seq1  AATTTTTCTGTACTGAAGAGGAGTCCCTTCTCATTAATTAACATTAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTGTACTGAAGAGGAGTCCCTTCTCATTAATTAACATTAGTAG  750

seq1  GCCTTATAATTTGTTCTGC-TTGATGGTGATAATTCAATGCTTTCCTTAC  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCTTATAATTTGTTCTGCTTTGATGGTGATAATTCAATGCTTTCCTTAC  800

seq1  TTATTTTGTAGCTCAAGATGCCCCAGCTGTGAATCTTTCCAGCTTTCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTAGCTCAAGATGCCCCAGCTGTGAATCTTTCCAGCTTTCTCT  850

seq1  TGTGGACTTGCAAGCCTTTGTAACATGCCTTTATCTTCCTCTTCGTTTTT  899
      ||||||| |||||||||||| |||||||||||||||||||||||| ||||
seq2  TGTGGAC-TGCAAGCCTTTG-AACATGCCTTTATCTTCCTCTTCG-TTTT  897

seq1  AGTTCTTTCCTTTATGATACCTGGAAA-TGTTTCAGGCTTGCTATATGGT  948
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTTC-TTCCTTTATGATACCTGGAAATTGTTTCAGGCTTGCTATATGGT  946

seq1  TTTCAGACCAGTGCTGGCATCGACCACTTCTCAAAGGAACCCGATTTCTT  998
      ||| |||||| |||||||||||||||||||||||||||  ||||||||||
seq2  TTTTAGACCA-TGCTGGCATCGACCACTTCTCAAAGGA--CCGATTTCTT  993

seq1  TTATTACAGAG-CAGTACTTAGAAATGATAATCTGGCTAGTTTGTCTCAT  1047
      ||||||||||| |||||| ||| |||| ||  ||||||||||||||||||
seq2  TTATTACAGAGCCAGTAC-TAG-AATGGTATCCTGGCTAGTTTGTCTCAT  1041

seq1  T  1048
      |
seq2  T  1042