BAC Information

Click to search

BAC

Clone NameB6Ng01-156J05
Chromosome3 (Build37)
Map Location 32,553,511 - 32,716,084
singlet/doubletdoublet
Overlap geneActl6a, Mrpl47, Ndufb5
Upstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977
Downstream geneUsp13, Pex2, EG545512, LOC100041058, Ttc14, Ccdc39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156J05.bB6Ng01-156J05.g
ACCDH951044DH951045
length958590
definitionDH951044|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J05, 5' end.DH951045|Mus musculus domesticus DNA, BAC clone: B6Ng01-156J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,715,124 - 32,716,084)(32,553,511 - 32,554,099)
sequence
gaattctaccccctcccccacacaaccagataaggatgtctatttttctc
catctttacaatgccgtcctatgactcaaggcccttctcgaacattcggt
agcctgatttgaggattcatgttctgcccttgcttgtggattcttcaaaa
taaaataatgggggggggggcttaataatatgcaaatagagcgtgttcgt
gacgtatactctcatgtctatcatcttcttaaaaaaaaaaaagtaaataa
ataaataacccatggaatgaggaggtggaaacaggtacaggagctcaaaa
ttagccttggcttagctacatgagatgctgtctttaaaataaataagtaa
atacccacccatcctacatcggctattccactgaggttccctaactatgt
gtatcctactaccagggcatagctcttcgtgacagcgagaaggtgcagat
ccaaagcattctgtaagtctctccagataagactatcctgaaagtcgctg
gtgatgtcactaaatgtctctgcctcacattgcttcagagcaaagaatta
cacacattacacttggcttcctccctatctagtaggatctctgcctgttc
acaaactggctacagaaagaaagttgatttaaaatgttgaaagcttaata
tccaatctcgaattaaacaaaaagtcaaatcggtgagatttgtttctcat
ctggcagctgataaaagatctatcaaattagtccaggcttgagaaacacc
ctcaaacacattgtttggtgggaacaaaaactgcacatctctgaaagggt
gtttacttttatttttgtcactttgaatcccaagttgatgttgacttctg
gtgatccccttgccccagtccaaccatcaccccatttgggtccccactgc
tggatttcaggcctgtgcattctggatgaaaattagtacactgatcttat
tttatatt
gaattctaagtgtgtcctacagtcctcatctgcttaccaagtgtctgtca
ctctttccttcccgtagctcgggaaccacccattttccaccccatctctc
tctgggatgctctagttcagacatccttctttttcccttggattatggca
ctagtcatttctggttgtgttcttctccatttttaatcatcactctttat
tctttcttgagatagggtctcactgggcagccctagctagcctggaaatc
actatgtaaaccaggctggcctcagactcatggatgtgcctgcctctggc
tcccaagtgctggattaaagatacataccaccatttcctgctaaaatttg
ctctctgttcaacttccaaagctttatgctctgtctccgaggctttatgc
tgcatccccagctctagcacatgcttctaaaaatacacttatagtcttca
cggttttcaatcctttgatggtttccctgagagttcaagaaagaagggaa
ggaaggaaggtaggaaggaaggtatgaattttttgaaggaaggaaggaag
agatttttccttcctagaaaattagacatataaggacaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_32715124_32716084
seq2: B6Ng01-156J05.b_46_1002 (reverse)

seq1  ATATAAAATTAAGATCAGTGTTACTAAATTTCCTTCCAGAATGCACAGGC  50
      |||||||| ||||||||||| |||| ||||| | ||||||||||||||||
seq2  ATATAAAA-TAAGATCAGTG-TACT-AATTTTCATCCAGAATGCACAGGC  47

seq1  CTGAAATCCAGCAGTGGGGAACCAAATGGGGGTGATGGGTTGGACTGGGG  100
      |||||||||||||||||||| |||||| |||||||| |||||||||||||
seq2  CTGAAATCCAGCAGTGGGGACCCAAAT-GGGGTGAT-GGTTGGACTGGGG  95

seq1  CAGGGGGATCACCAGGAGTCAACATCAACTTGGGATTCAAAGTGACAAAA  150
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAGGGGATCACCAGAAGTCAACATCAACTTGGGATTCAAAGTGACAAAA  145

seq1  ATAAAAGTAAACACCCTTTCAGAGATGTGCAGTTTTTGTTCCCACC-AAC  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAAAAGTAAACACCCTTTCAGAGATGTGCAGTTTTTGTTCCCACCAAAC  195

seq1  AATGTGTTTGAGGGTGTTTCTCAAGCCTGGACTAATTTGATAGATCTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTTGAGGGTGTTTCTCAAGCCTGGACTAATTTGATAGATCTTTT  245

seq1  ATCAGCTGCCAGATGAGAAACAAATCTCACCGATTTGACTTTTTGTTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGCCAGATGAGAAACAAATCTCACCGATTTGACTTTTTGTTTAA  295

seq1  TTCGAGATTGGATATTAAGCTTTCAACATTTTAAATCAACTTTCTTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGATTGGATATTAAGCTTTCAACATTTTAAATCAACTTTCTTTCTG  345

seq1  TAGCCAGTTTGTGAACAGGCAGAGATCCTACTAGATAGGGAGGAAGCCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTTTGTGAACAGGCAGAGATCCTACTAGATAGGGAGGAAGCCAA  395

seq1  GTGTAATGTGTGTAATTCTTTGCTCTGAAGCAATGTGAGGCAGAGACATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGTGTGTAATTCTTTGCTCTGAAGCAATGTGAGGCAGAGACATT  445

seq1  TAGTGACATCACCAGCGACTTTCAGGATAGTCTTATCTGGAGAGACTTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACATCACCAGCGACTTTCAGGATAGTCTTATCTGGAGAGACTTAC  495

seq1  AGAATGCTTTGGATCTGCACCTTCTCGCTGTCACGAAGAGCTATGCCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTTTGGATCTGCACCTTCTCGCTGTCACGAAGAGCTATGCCCTG  545

seq1  GTAGTAGGATACACATAGTTAGGGAACCTCAGTGGAATAGCCGATGTAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGGATACACATAGTTAGGGAACCTCAGTGGAATAGCCGATGTAGG  595

seq1  ATGGGTGGGTATTTACTTATTTATTTTAAAGACAGCATCTCATGTAGCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGGTATTTACTTATTTATTTTAAAGACAGCATCTCATGTAGCTA  645

seq1  AGCCAAGGCTAATTTTGAGCTCCTGTACCTGTTTCCACCTCCTCATTCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCTAATTTTGAGCTCCTGTACCTGTTTCCACCTCCTCATTCCA  695

seq1  TGGGTTATTTATTTATTTACTTTTTTTTTTTTAAGAAGATGATAGACATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTATTTATTTATTTACTTTTTTTTTTTTAAGAAGATGATAGACATG  745

seq1  AGAGTATACGTCACGAACACGCTCTATTTGCATATTATTAAGCCCCCCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATACGTCACGAACACGCTCTATTTGCATATTATTAAGCCCCCCCC  795

seq1  CCCATTATTTTATTTTGAAGAATCCACAAGCAAGGGCAGAACATGAATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTATTTTATTTTGAAGAATCCACAAGCAAGGGCAGAACATGAATCC  845

seq1  TCAAATCAGGCTACCGAATGTTCGAGAAGGGCCTTGAGTCATAGGACGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAGGCTACCGAATGTTCGAGAAGGGCCTTGAGTCATAGGACGGC  895

seq1  ATTGTAAAGATGGAGAAAAATAGACATCCTTATCTGGTTGTGTGGGGGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAGATGGAGAAAAATAGACATCCTTATCTGGTTGTGTGGGGGAG  945

seq1  GGGGTAGAATTC  961
      ||||||||||||
seq2  GGGGTAGAATTC  957

seq1: chr3_32553511_32554099
seq2: B6Ng01-156J05.g_68_657

seq1  GAATTCTAAGTGTGTCCTACAGTCCTCATCTGCTTACCAAGTGTCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTGTGTCCTACAGTCCTCATCTGCTTACCAAGTGTCTGTCA  50

seq1  CTCTTTCCTTCCCGTAGCTCGGGAACCACCCATTTTCCACCCCATCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTTCCCGTAGCTCGGGAACCACCCATTTTCCACCCCATCTCTC  100

seq1  TCTGGGATGCTCTAGTTCAGACATCCTTCTTTTTCCCTTGGATTATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATGCTCTAGTTCAGACATCCTTCTTTTTCCCTTGGATTATGGCA  150

seq1  CTAGTCATTTCTGGTTGTGTTCTTCTCCATTTTTAATCATCACTCTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATTTCTGGTTGTGTTCTTCTCCATTTTTAATCATCACTCTTTAT  200

seq1  TCTTTCTTGAGATAGGGTCTCACTGGGCAGCCCTAGCTAGCCTGGAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTGAGATAGGGTCTCACTGGGCAGCCCTAGCTAGCCTGGAAATC  250

seq1  ACTATGTAAACCAGGCTGGCCTCAGACTCATGGATGTGCCTGCCTCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAAACCAGGCTGGCCTCAGACTCATGGATGTGCCTGCCTCTGGC  300

seq1  TCCCAAGTGCTGGATTAAAGATACATACCACCATTTCCTGCTAAAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGATTAAAGATACATACCACCATTTCCTGCTAAAATTTG  350

seq1  CTCTCTGTTCAACTTCCAAAGCTTTATGCTCTGTCTCCGAGGCTTTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTCAACTTCCAAAGCTTTATGCTCTGTCTCCGAGGCTTTATGC  400

seq1  TGCATCCCCAGCTCTAGCACATGCTTCTAAAAATACACTTATAGTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCCCAGCTCTAGCACATGCTTCTAAAAATACACTTATAGTCTTCA  450

seq1  CGGTTTTCAATCCTTTGATGGTTTCCCTGAGAGTTCAAGAAAGAAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTCAATCCTTTGATGGTTTCCCTGAGAGTTCAAGAAAGAAGGGAA  500

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAA-GGAAGGAAGGAAGGAAGGAAG  549
      |||||||||| ||||||||||| | |||      ||||||||||||||||
seq2  GGAAGGAAGGTAGGAAGGAAGGTATGAATTTTTTGAAGGAAGGAAGGAAG  550

seq1  AGATTTTTCCTTCCAAGAAAATTAGACATATAAGGACAAC  589
      |||||||||||||| |||||||||||||||||||||||||
seq2  AGATTTTTCCTTCCTAGAAAATTAGACATATAAGGACAAC  590