BAC Information

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BAC

Clone NameB6Ng01-156K06
Chromosome3 (Build37)
Map Location 13,811,352 - 13,903,547
singlet/doubletdoublet
Overlap gene0710005M24Rik
Upstream geneEG668033, LOC668037, LOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156K06.bB6Ng01-156K06.g
ACCDH951090DH951091
length9691,125
definitionDH951090|Mus musculus domesticus DNA, BAC clone: B6Ng01-156K06, 5' end.DH951091|Mus musculus domesticus DNA, BAC clone: B6Ng01-156K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,811,352 - 13,811,931)(13,902,397 - 13,903,547)
sequence
gaattcctttacctacaggctaagagcagcagaagtttgttttttgtttg
tttgtttgtttgtttcagttttacaaatactcttttttattggatatttt
atgtatttacatttcaaatgttatcccctttccaggtttcccctccagag
ccctttctcccattccctctacccttgcatctaagaggatgctccccctc
ccacccccctactcctacctccccaccctggcattcccctatactgggcc
atcaaatcttcacaggaccaaggacttctcctcctattgatgccagtcaa
tgccatcctctgctacatatgcagctggagccatgggtccctccatgtgt
actccttggttgacagcatagttcctgggagctctggggagtattgttgg
ttaatactgttgttctttctagggagttgtaaactccttcagctcctcca
gtcctttctcttactcttcctttggggaccctatggtaagttggcttcta
gcatctgcctctgtatttgtctgggtctggcaaagcctctcagatgacag
ctataacaggctactgtcagcaagcatttcttggcctccacaatagtgtt
tgggtttggtgactgtgtatgggatgaatccccaggtggggcagtctctg
gatggtcttttcttcacagtctctgctccacactttgtcctggtatttcc
tttagacaggagcccttctgggttaagaatttggagatgagtgggtggcc
ccatccccctacctatggtcttgcctaactgctggatattgtctctacag
gttctccctccaatgtcatccctgttggggcctgagagcctctgtttttc
tggcatctgggacttgctggtggctactcccagttacccatcccccattg
ctgcacactctattcaattcctgaccctctgtttatcttccctatctctc
ttataactgctcccttttc
gaattcttctctcccagtggataaaataatcagtaatattataaaacttt
tcaaatgttcacaaatatattaaactgcatgaaaaccacactaattgatt
tcaagtcttcttgggaaaataataaaaacatgttctctaataaatgctaa
ttataattttaatgaataaccgaattcattgttatgaattatgaaataca
ttggtatgaacaagaaatgcagaccttgttctctaaaagaaaatgaaaat
ggaatttaatttttaaataattttggatatcttaaataacaatcgataaa
tctaaggaaaagttaacaattgaaaatgactaaaaactgtgactcataac
ataccccaaccccaaatcggtgttttatatataaagctgtaataatataa
aattttacagccttatgtattacattttagcataaatcaaatgaataatt
aataaactttataaaactgatcaaaaatggaaacaaacctaatgagcagg
agggaaaaatctattaagatacggatgaaacctactgaaatgtaggatat
gtaagcaaatagaaaatatataaatcaatcatatcatgcatggagagaaa
tgataaaataggtaactactggtttctagataaacaaaaggaaagaaagg
agtatcaaaattaaaataatgttcaactttacctatatgtttaaaaattg
agacctggtcaccttgggcgtggggtcagcagacacccccaaggtcccca
agaggactctccatgtaatctctggaccaccagtgagtggaacacaactt
ctgttccattccaatcatgcggaccggagaaagcattagggaagcagaaa
agccggcctgaccagggtcacaaatcccttcctggccacctgggttcgga
gttggcagacattgccaagtccctagaggacagcttcagagcagactcct
ttttgggctcagacatcagcatcttccctgccagaggagagtgtcgcctc
cacccagaggatttgctgctgagcactgggggagcatctctctgagactt
cctgatctctagactagtctcacaggtgagagtgtggacaggctgttttc
gcttcatatctgacggagcgatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13811352_13811931
seq2: B6Ng01-156K06.b_47_626

seq1  GAATTCCTTTACCTACAGGCTAAGAGCAGCAGAAGTTTGTTTTTTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTACCTACAGGCTAAGAGCAGCAGAAGTTTGTTTTTTGTTTG  50

seq1  TTTGTTTGTTTGTTTCAGTTTTACAAATACTCTTTTTTATTGGATATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTCAGTTTTACAAATACTCTTTTTTATTGGATATTTT  100

seq1  ATGTATTTACATTTCAAATGTTATCCCCTTTCCAGGTTTCCCCTCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTACATTTCAAATGTTATCCCCTTTCCAGGTTTCCCCTCCAGAG  150

seq1  CCCTTTCTCCCATTCCCTCTACCCTTGCATCTAAGAGGATGCTCCCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCCCATTCCCTCTACCCTTGCATCTAAGAGGATGCTCCCCCTC  200

seq1  CCACCCCCCTACTCCTACCTCCCCACCCTGGCATTCCCCTATACTGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCTACTCCTACCTCCCCACCCTGGCATTCCCCTATACTGGGCC  250

seq1  ATCAAATCTTCACAGGACCAAGGACTTCTCCTCCTATTGATGCCAGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCTTCACAGGACCAAGGACTTCTCCTCCTATTGATGCCAGTCAA  300

seq1  TGCCATCCTCTGCTACATATGCAGCTGGAGCCATGGGTCCCTCCATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCTCTGCTACATATGCAGCTGGAGCCATGGGTCCCTCCATGTGT  350

seq1  ACTCCTTGGTTGACAGCATAGTTCCTGGGAGCTCTGGGGAGTATTGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGGTTGACAGCATAGTTCCTGGGAGCTCTGGGGAGTATTGTTGG  400

seq1  TTAATACTGTTGTTCTTTCTAGGGAGTTGTAAACTCCTTCAGCTCCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTGTTGTTCTTTCTAGGGAGTTGTAAACTCCTTCAGCTCCTCCA  450

seq1  GTCCTTTCTCTTACTCTTCCTTTGGGGACCCTATGGTAAGTTGGCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCTCTTACTCTTCCTTTGGGGACCCTATGGTAAGTTGGCTTCTA  500

seq1  GCATCTGCCTCTGTATTTGTCTGGGTCTGGCAAAGCCTCTCAGATGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCCTCTGTATTTGTCTGGGTCTGGCAAAGCCTCTCAGATGACAG  550

seq1  CTATAACAGGCTACTGTCAGCAAGCATTTC  580
      ||||||||||||||||||||||||||||||
seq2  CTATAACAGGCTACTGTCAGCAAGCATTTC  580

seq1: chr3_13902397_13903547
seq2: B6Ng01-156K06.g_66_1190 (reverse)

seq1  TGGATCTGCCTCCTGTCAGAATATGAAGGCCGGAAACAGGGCCTGTCCAC  50
      ||||||   |||| ||||| ||||||||  || |||||  ||||||||||
seq2  TGGATC--GCTCC-GTCAG-ATATGAAG--CGAAAACA--GCCTGTCCAC  42

seq1  ACTCTCACCTGTGAAGACTAGTCTTAGAGGGATCAGGGAAGTCTCAGAGG  100
      ||||||||||||| ||||||||||   || ||||| |||||||||||| |
seq2  ACTCTCACCTGTG-AGACTAGTCT---AGAGATCA-GGAAGTCTCAGA-G  86

seq1  AGATGGCTCCCCCAGGTGCTCCAGCAGCAAATCCCTCCTGGGTGGAGGCG  150
      |||| ||||||||| ||||| |||||||||||||   |||||||||||| 
seq2  AGAT-GCTCCCCCA-GTGCT-CAGCAGCAAATCC--TCTGGGTGGAGGC-  130

seq1  GACACCTCTCCTCTGGCAGGGAAGATGCCTGATGTCTGGAGCCCAAAAAG  200
      |||| |||||||||||||||||||||| ||||||||| ||||||||||||
seq2  GACA-CTCTCCTCTGGCAGGGAAGATG-CTGATGTCT-GAGCCCAAAAAG  177

seq1  GGGTCTGCCTCTGAAGCTGTCCTCTAGGGACCTTGGCAATGTCTGCCAAC  250
      | ||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  GAGTCTG-CTCTGAAGCTGTCCTCTAGGGA-CTTGGCAATGTCTGCCAAC  225

seq1  TCCGAACCCAGGTGGCCAGGAAGGGATTTGTGACCCTGGTCAGGCCGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAACCCAGGTGGCCAGGAAGGGATTTGTGACCCTGGTCAGGCCGGCT  275

seq1  TTTCTGCTTCCCTAATGCTTTCTCCGGTCCTGCATGATTGGAATGGAACA  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCTGCTTCCCTAATGCTTTCTCCGGTCC-GCATGATTGGAATGGAACA  324

seq1  GAAGTTGTGTTCCACTCACTGGTGGTCCAGAGATTACATGGAGAGTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTGTTCCACTCACTGGTGGTCCAGAGATTACATGGAGAGTCCTC  374

seq1  TTGGGGACCTTGGGGGTGTCTGCTGACCCCACGCCCAAGGTGACCAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACCTTGGGGGTGTCTGCTGACCCCACGCCCAAGGTGACCAGGTC  424

seq1  TCAATTTTTAAACATATAGGTAAAGTTGAACATTATTTTAATTTTGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTAAACATATAGGTAAAGTTGAACATTATTTTAATTTTGATAC  474

seq1  TCCTTTCTTTCCTTTTGTTTATCTAGAAACCAGTAGTTACCTATTTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTTCCTTTTGTTTATCTAGAAACCAGTAGTTACCTATTTTATC  524

seq1  ATTTCTCTCCATGCATGATATGATTGATTTATATATTTTCTATTTGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTCCATGCATGATATGATTGATTTATATATTTTCTATTTGCTTA  574

seq1  CATATCCTACATTTCAGTAGGTTTCATCCGTATCTTAATAGATTTTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTACATTTCAGTAGGTTTCATCCGTATCTTAATAGATTTTTCCC  624

seq1  TCCTGCTCATTAGGTTTGTTTCCATTTTTGATCAGTTTTATAAAGTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCATTAGGTTTGTTTCCATTTTTGATCAGTTTTATAAAGTTTAT  674

seq1  TAATTATTCATTTGATTTATGCTAAAATGTAATACATAAGGCTGTAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTCATTTGATTTATGCTAAAATGTAATACATAAGGCTGTAAAAT  724

seq1  TTTATATTATTACAGCTTTATATATAAAACACCGATTTGGGGTTGGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATTACAGCTTTATATATAAAACACCGATTTGGGGTTGGGGTA  774

seq1  TGTTATGAGTCACAGTTTTTAGTCATTTTCAATTGTTAACTTTTCCTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGAGTCACAGTTTTTAGTCATTTTCAATTGTTAACTTTTCCTTAG  824

seq1  ATTTATCGATTGTTATTTAAGATATCCAAAATTATTTAAAAATTAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCGATTGTTATTTAAGATATCCAAAATTATTTAAAAATTAAATTC  874

seq1  CATTTTCATTTTCTTTTAGAGAACAAGGTCTGCATTTCTTGTTCATACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATTTTCTTTTAGAGAACAAGGTCTGCATTTCTTGTTCATACCA  924

seq1  ATGTATTTCATAATTCATAACAATGAATTCGGTTATTCATTAAAATTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTCATAATTCATAACAATGAATTCGGTTATTCATTAAAATTATA  974

seq1  ATTAGCATTTATTAGAGAACATGTTTTTATTATTTTCCCAAGAAGACTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATTTATTAGAGAACATGTTTTTATTATTTTCCCAAGAAGACTTG  1024

seq1  AAATCAATTAGTGTGGTTTTCATGCAGTTTAATATATTTGTGAACATTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATTAGTGTGGTTTTCATGCAGTTTAATATATTTGTGAACATTTG  1074

seq1  AAAAGTTTTATAATATTACTGATTATTTTATCCACTGGGAGAGAAGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTATAATATTACTGATTATTTTATCCACTGGGAGAGAAGAATT  1124

seq1  C  1151
      |
seq2  C  1125