BAC Information

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BAC

Clone NameB6Ng01-156N24
Chromosome3 (Build37)
Map Location 141,779,440 - 141,891,454
singlet/doubletdoublet
Overlap geneGabarapl2-ps3
Upstream genePdha2, Unc5c, LOC100039923, Bmpr1b
Downstream genePdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156N24.bB6Ng01-156N24.g
ACCDH951262DH951263
length1,1231,087
definitionDH951262|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N24, 5' end.DH951263|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,779,440 - 141,780,575)(141,890,348 - 141,891,454)
sequence
gaattctgtaatttcacatcctgaaaattttggaattagaaagtttaacg
ctaacaatacttctattatattttctacttgaaaactttttgttttgaaa
attttttaaactgtccaaattaataagattgtgttgttggccaccatgac
aagtatattcagctattcgatattatcattattttttacaataacccaaa
tatattagttgtcagaactggaccgaatagctaactctattttcatatat
ttactaaattatgcttccagattttaaattccaaaaccactgttttgttt
tccttcaagcctctcattgagacattgatgctatgaactccactgcctcc
atgttgaacttcccactgaccagaggtgctttccgaccatgcattagact
tccttctcaaatatgcaaatgtataatattcttacactactttgcaagcc
aattgttatccaatataataaattgtctccttgttttactctgtgtttcc
tatgagaaactttctaggatacaaggtctagattgtgtgcactctttttc
aaaacctgagcatctagggttcctttcctgtctgaccttctcaggcaagg
cctatttcctgagctgtctttctcaggacactgtgatggtcagcactgtg
ctggaatgcttaccaatttgtgctcagcacctaccagggcctcccatacc
cctgctaagcacaccaacaaattaagagcattgtccaaggaataaattcc
gagtgtcaggaagccataaagatcaagtatgtgttcttgtgaaaatttgt
atcctgaggaatttcactatctcatccatcttttgcaactatcacttctg
taagccatggaggcaaaaatctgaagagcagccagagcagccaggatgtg
gtccatgcggtcagatacataattgtaaactaatgcaaagccactcttac
aaatcctgatcataaactttcaacaccttttccatcctcccacacctact
ctgcctggcagtacaatttctgtctttgacagttcacccacatccacacc
tcagcatgaaaactgcactgatatcactactctggatgatgatttctcta
agtcatctgttttaaatgattat
gaattcatacacgctgctgagtcaaagtgtaaccattgagtttcaaacag
gtaattctcaccagaactctctggcacacacatttgcttgtatgcattca
gttcccatggttagggaactacactggttctagttctaggcagctgagag
aaaaggtgttacatgttctgcagtcagtttaagaaatggtgtatgtatac
aattgttcccccagagaaatctccacaccctgggatcccgtaagagttgt
atccatcctacatgagcaatgtctggtaacaaaaccacttcacttgattt
cccactcagaatgggtaggaaaggctaccgtttgcataatgtcaccagct
cttatcccagaatgcatgtctgcaagggaggagaaagcctaggattcacc
cagactgctgttccagtcactctgtcagaacaacattaacaactattatg
cggctgacacttgctttctgggttagcagaaacacaattcaggagaagaa
cctgactccaaaaaagaaaagaaagaaagttcaggtataaggctaataag
ggtgtggggcagactctacaagccttgcagagccagaggaagtgagccac
aagagctttggggagaaggttgttccagaagaaagcttggcatggccaag
gaacagctaaagccaggttagctagaggctgcaagagtgggaggagactg
ggaaagggaggccatagagaggccaccaatgggggcttgtaggtcacata
cagactggctttgactgtaatgaggaacagtaaggttgatgatgtcggta
cccatcgtccattctgtctgtttctcctcttatttttgaggatggtcttt
ggcaactggtagaccgcattcctatgtctgaatgagcggaggcctgagtg
tgtgggtagcatactaaccatctctgacttttactgtgatttgctcacag
gcaggcttcctgacactctatttttggcttgtagaaaaattatggtagtt
ctcatcctgacgaatttccaagtcctggactctcgatattccgtatatac
tttagagccttattacttgctgttcttctgtcgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141779440_141780575
seq2: B6Ng01-156N24.b_44_1166

seq1  GAATTCTGTAATTTCACATCCTGAAAATTTTGGAATTAGAAAGTTTAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAATTTCACATCCTGAAAATTTTGGAATTAGAAAGTTTAACG  50

seq1  CTAACAATACTTCTATTATATTTTCTACTTGAAAACTTTTTGTTTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATACTTCTATTATATTTTCTACTTGAAAACTTTTTGTTTTGAAA  100

seq1  ATTTTTTAAACTGTCCAAATTAATAAGATTGTGTTGTTGGCCACCATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAACTGTCCAAATTAATAAGATTGTGTTGTTGGCCACCATGAC  150

seq1  AAGTATATTCAGCTATTCGATATTATCATTATTTTTTACAATAACCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATTCAGCTATTCGATATTATCATTATTTTTTACAATAACCCAAA  200

seq1  TATATTAGTTGTCAGAACTGGACCGAATAGCTAACTCTATTTTCATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGTTGTCAGAACTGGACCGAATAGCTAACTCTATTTTCATATAT  250

seq1  TTACTAAATTATGCTTCCAGATTTTAAATTCCAAAACCACTGTTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAATTATGCTTCCAGATTTTAAATTCCAAAACCACTGTTTTGTTT  300

seq1  TCCTTCAAGCCTCTCATTGAGACATTGATGCTATGAACTCCACTGCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAGCCTCTCATTGAGACATTGATGCTATGAACTCCACTGCCTCC  350

seq1  ATGTTGAACTTCCCACTGACCAGAGGTGCTTTCCGACCATGCATTAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAACTTCCCACTGACCAGAGGTGCTTTCCGACCATGCATTAGACT  400

seq1  TCCTTCTCAAATATGCAAATGTATAATATTCTTACACTACTTTGCAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCAAATATGCAAATGTATAATATTCTTACACTACTTTGCAAGCC  450

seq1  AATTGTTATCCAATATAATAAATTGTCTCCTTGTTTTACTCTGTGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTATCCAATATAATAAATTGTCTCCTTGTTTTACTCTGTGTTTCC  500

seq1  TATGAGAAACTTTCTAGGATACAAGGTCTAGATTGTGTGCACTCTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAACTTTCTAGGATACAAGGTCTAGATTGTGTGCACTCTTTTTC  550

seq1  AAAACCTGAGCATCTAGGGTTCCTTTCCTGTCTGACCTTCTCAGGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGAGCATCTAGGGTTCCTTTCCTGTCTGACCTTCTCAGGCAAGG  600

seq1  CCTATTTCCTGAGCTGTCTTTCTCAGGACACTGTGATGGTCAGCACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCCTGAGCTGTCTTTCTCAGGACACTGTGATGGTCAGCACTGTG  650

seq1  CTGGAATGCTTACCAATTTGTGCTCAGCACCTACCAGGGCCTCCCATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGCTTACCAATTTGTGCTCAGCACCTACCAGGGCCTCCCATACC  700

seq1  CCTGCTAAGCACACCAACAAATTAAGAGCATTGTCCAAGGAATAAATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAAGCACACCAACAAATTAAGAGCATTGTCCAAGGAATAAATTCC  750

seq1  GAGTGTCAGGAAGCCATAAAGATCAAGTATGTGTTCTTGTGAAAATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCAGGAAGCCATAAAGATCAAGTATGTGTTCTTGTGAAAATTTGT  800

seq1  ATCCTGAGGAATTTCACTATCTCATCCATCTTTTGCAACTATCACTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGGAATTTCACTATCTCATCCATCTTTTGCAACTATCACTTCTG  850

seq1  TAAGCCATGGAGGCAAAAATCTGAAGAGCAGCCAGAGCAGCCAGGATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCATGGAGGCAAAAATCTGAAGAGCAGCCAGAGCAGCCAGGATGTG  900

seq1  GTCCATGCGGTCAGATACATAATTGTAAACTAATGCAAAGCCACTCTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGCGGTCAGATACATAATTGTAAACTAATGCAAAGCCACTCTTAC  950

seq1  AAATCCTGAATCATAAACTTTCAACACCTTTTCCATCCTCCCACACCTAC  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTG-ATCATAAACTTTCAACACCTTTTCCATCCTCCCACACCTAC  999

seq1  TCTGCCTGGCAAGGTACAATTTCTTGTTCTTTGACAGTTCACCCACATCC  1050
      |||||||||||  |||||||||||   ||||||||||||||||||||| |
seq2  TCTGCCTGGCA--GTACAATTTCT--GTCTTTGACAGTTCACCCACAT-C  1044

seq1  CACACCTCAGCATGAAAACTGCACTTAAATATCACTACTCTGGATGGAAT  1100
      |||||||||||||||||||||||||   ||||||||||||||||||  ||
seq2  CACACCTCAGCATGAAAACTGCACT--GATATCACTACTCTGGATG--AT  1090

seq1  GAATTTCTCTAAAGTCATCTGTTTTAAATGGATTAT  1136
      | |||||||| |||||||||||||||||| ||||||
seq2  G-ATTTCTCT-AAGTCATCTGTTTTAAAT-GATTAT  1123

seq1: chr3_141890348_141891454
seq2: B6Ng01-156N24.g_67_1153 (reverse)

seq1  TCAGCGAGACAGAAGAAACAAGCAAAGGAAAATTAAAGGCTCCTAAAATT  50
      |||||  ||||||||||   |||||  | ||    |||||| ||||| | 
seq2  TCAGC--GACAGAAGAA--CAGCAA--GTAA---TAAGGCT-CTAAAGTA  40

seq1  TATATTACGGAAATTATCGAGAGTCCA-GACTTGTGAAATTTCGTCAGGA  99
      ||   |||||||  ||||||||||||| |||||| |||| ||||||||||
seq2  TA---TACGGAA--TATCGAGAGTCCAGGACTTG-GAAA-TTCGTCAGGA  83

seq1  TGAGAACTA-CATAATTTTTCTTACAAGCCAAAAATAGAGTGTTCAGGAA  148
      ||||||||| ||||||||||| |||||||||||||||||||| |||||||
seq2  TGAGAACTACCATAATTTTTC-TACAAGCCAAAAATAGAGTG-TCAGGAA  131

seq1  GCCCTGCCCTGTGAGCAAATCACAGTAAAAGTCAGAGATGGTTAGTAATG  198
      | |||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  G-CCTG-CCTGTGAGCAAATCACAGTAAAAGTCAGAGATGGTTAGT-ATG  178

seq1  CTACCCACACACTCAGGCCTCCGCTCATTCAGACATAGGAATGCGGTCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACACACTCAGGCCTCCGCTCATTCAGACATAGGAATGCGGTCTA  228

seq1  CCAGTTGCCAAAGACCATCCTCAAAAATAAGAGGAGAAACAGACAGAATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGCCAAAGACCATCCTCAAAAATAAGAGGAGAAACAGACAGAATG  278

seq1  GACGATGGGTACCGACATCATCAACCTTACTGTTCCTCATTACAGTCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATGGGTACCGACATCATCAACCTTACTGTTCCTCATTACAGTCAAA  328

seq1  GCCAGTCTGTATGTGACCTACAAGCCCCCATTGGTGGCCTCTCTATGGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTGTATGTGACCTACAAGCCCCCATTGGTGGCCTCTCTATGGCC  378

seq1  TCCCTTTCCCAGTCTCCTCCCACTCTTGCAGCCTCTAGCTAACCTGGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCCAGTCTCCTCCCACTCTTGCAGCCTCTAGCTAACCTGGCTT  428

seq1  TAGCTGTTCCTTGGCCATGCCAAGCTTTCTTCTGGAACAACCTTCTCCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTCCTTGGCCATGCCAAGCTTTCTTCTGGAACAACCTTCTCCCC  478

seq1  AAAGCTCTTGTGGCTCACTTCCTCTGGCTCTGCAAGGCTTGTAGAGTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTTGTGGCTCACTTCCTCTGGCTCTGCAAGGCTTGTAGAGTCTG  528

seq1  CCCCACACCCTTATTAGCCTTATACCTGAACTTTCTTTCTTTTCTTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACCCTTATTAGCCTTATACCTGAACTTTCTTTCTTTTCTTTTTT  578

seq1  GGAGTCAGGTTCTTCTCCTGAATTGTGTTTCTGCTAACCCAGAAAGCAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGGTTCTTCTCCTGAATTGTGTTTCTGCTAACCCAGAAAGCAAG  628

seq1  TGTCAGCCGCATAATAGTTGTTAATGTTGTTCTGACAGAGTGACTGGAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCGCATAATAGTTGTTAATGTTGTTCTGACAGAGTGACTGGAAC  678

seq1  AGCAGTCTGGGTGAATCCTAGGCTTTCTCCTCCCTTGCAGACATGCATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTGGGTGAATCCTAGGCTTTCTCCTCCCTTGCAGACATGCATTC  728

seq1  TGGGATAAGAGCTGGTGACATTATGCAAACGGTAGCCTTTCCTACCCATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAAGAGCTGGTGACATTATGCAAACGGTAGCCTTTCCTACCCATT  778

seq1  CTGAGTGGGAAATCAAGTGAAGTGGTTTTGTTACCAGACATTGCTCATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGGAAATCAAGTGAAGTGGTTTTGTTACCAGACATTGCTCATGT  828

seq1  AGGATGGATACAACTCTTACGGGATCCCAGGGTGTGGAGATTTCTCTGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGATACAACTCTTACGGGATCCCAGGGTGTGGAGATTTCTCTGGG  878

seq1  GGAACAATTGTATACATACACCATTTCTTAAACTGACTGCAGAACATGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATTGTATACATACACCATTTCTTAAACTGACTGCAGAACATGTA  928

seq1  ACACCTTTTCTCTCAGCTGCCTAGAACTAGAACCAGTGTAGTTCCCTAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTTCTCTCAGCTGCCTAGAACTAGAACCAGTGTAGTTCCCTAAC  978

seq1  CATGGGAACTGAATGCATACAAGCAAATGTGTGTGCCAGAGAGTTCTGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAACTGAATGCATACAAGCAAATGTGTGTGCCAGAGAGTTCTGGT  1028

seq1  GAGAATTACCTGTTTGAAACTCAATGGTTACACTTTGACTCAGCAGCGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTACCTGTTTGAAACTCAATGGTTACACTTTGACTCAGCAGCGTG  1078

seq1  TATGAATTC  1107
      |||||||||
seq2  TATGAATTC  1087